>CABO-LLG-01-000000 	gi|333410722|gb|EGK69709.1| hypothetical protein CAB1_1004 [Chlamydophila abortus LLG]: H-rich region from 274 to 279 corrected with score 40
>CABO-LLG-01-000008 	gi|333410714|gb|EGK69701.1| 30S ribosomal protein S20 [Chlamydophila abortus LLG]: K-rich region from 4 to 45 corrected with score 43
>CABO-LLG-01-000009 	gi|333410713|gb|EGK69700.1| putative inner membrane protein [Chlamydophila abortus LLG]: Q-rich region from 92 to 200 corrected with score 55
>CABO-LLG-01-000022 	gi|333410700|gb|EGK69687.1| fused DNA topoisomerase I/SWI domain protein [Chlamydophila abortus LLG]: K-rich region from 743 to 783 corrected with score 55
>CABO-LLG-01-000022 	gi|333410700|gb|EGK69687.1| fused DNA topoisomerase I/SWI domain protein [Chlamydophila abortus LLG]: T-rich region from 729 to 781 corrected with score 51
>CABO-LLG-01-000036 	gi|333410686|gb|EGK69673.1| putative exported TonB protein [Chlamydophila abortus LLG]: K-rich region from 64 to 129 corrected with score 52
>CABO-LLG-01-000055 	gi|333410667|gb|EGK69654.1| putative inner membrane protein [Chlamydophila abortus LLG]: A-rich region from 10 to 389 corrected with score 181
>CABO-LLG-01-000055 	gi|333410667|gb|EGK69654.1| putative inner membrane protein [Chlamydophila abortus LLG]: S-rich region from 2 to 95 corrected with score 67
>CABO-LLG-01-000055 	gi|333410667|gb|EGK69654.1| putative inner membrane protein [Chlamydophila abortus LLG]: Q-rich region from 376 to 433 corrected with score 56
>CABO-LLG-01-000056 	gi|333410666|gb|EGK69653.1| putative inner membrane protein [Chlamydophila abortus LLG]: A-rich region from 60 to 361 corrected with score 145
>CABO-LLG-01-000057 	gi|333410665|gb|EGK69652.1| hypothetical protein CAB1_0945 [Chlamydophila abortus LLG]: T-rich region from 8 to 34 corrected with score 41
>CABO-LLG-01-000058 	gi|333410664|gb|EGK69651.1| putative regulatory protein [Chlamydophila abortus LLG]: K-rich region from 178 to 227 corrected with score 48
>CABO-LLG-01-000068 	gi|333410654|gb|EGK69641.1| hypothetical protein CAB1_0934 [Chlamydophila abortus LLG]: K-rich region from 55 to 94 corrected with score 40
>CABO-LLG-01-000069 	gi|333410653|gb|EGK69640.1| putative inner membrane protein [Chlamydophila abortus LLG]: L-rich region from 105 to 134 corrected with score 42
>CABO-LLG-01-000070 	gi|333410652|gb|EGK69639.1| putative type III export protein SctT [Chlamydophila abortus LLG]: M-rich region from 165 to 257 corrected with score 47
>CABO-LLG-01-000072 	gi|333410650|gb|EGK69637.1| putative type III export protein SctR [Chlamydophila abortus LLG]: L-rich region from 92 to 120 corrected with score 43
>CABO-LLG-01-000072 	gi|333410650|gb|EGK69637.1| putative type III export protein SctR [Chlamydophila abortus LLG]: M-rich region from 248 to 302 corrected with score 42
>CABO-LLG-01-000075 	gi|333410647|gb|EGK69634.1| putative type III export protein SctJ [Chlamydophila abortus LLG]: E-rich region from 287 to 328 corrected with score 47
>CABO-LLG-01-000087 	gi|333410635|gb|EGK69622.1| putative GTP-binding protein EngA [Chlamydophila abortus LLG]: E-rich region from 166 to 199 corrected with score 53
>CABO-LLG-01-000092 	gi|333410630|gb|EGK69617.1| putative helicase [Chlamydophila abortus LLG]: E-rich region from 103 to 144 corrected with score 43
>CABO-LLG-01-000118 	gi|333410604|gb|EGK69591.1| putative lipoprotein [Chlamydophila abortus LLG]: K-rich region from 29 to 91 corrected with score 41
>CABO-LLG-01-000128 	gi|333410594|gb|EGK69581.1| putative histone-like protein [Chlamydophila abortus LLG]: K-rich region from 4 to 123 corrected with score 112
>CABO-LLG-01-000128 	gi|333410594|gb|EGK69581.1| putative histone-like protein [Chlamydophila abortus LLG]: A-rich region from 67 to 120 corrected with score 48
>CABO-LLG-01-000144 	gi|333410578|gb|EGK69565.1| hypothetical protein CAB1_0851 [Chlamydophila abortus LLG]: P-rich region from 94 to 116 corrected with score 54
>CABO-LLG-01-000154 	gi|333410568|gb|EGK69555.1| hypothetical protein CAB1_0841 [Chlamydophila abortus LLG]: Q-rich region from 379 to 552 corrected with score 47
>CABO-LLG-01-000171 	gi|333410551|gb|EGK69538.1| 50S ribosomal protein L34 [Chlamydophila abortus LLG]: R-rich region from 2 to 41 corrected with score 42
>CABO-LLG-01-000173 	gi|333410549|gb|EGK69536.1| 30S ribosomal protein S14 [Chlamydophila abortus LLG]: K-rich region from 3 to 53 corrected with score 48
>CABO-LLG-01-000175 	gi|333410547|gb|EGK69534.1| hypothetical protein CAB1_0819 [Chlamydophila abortus LLG]: E-rich region from 125 to 162 corrected with score 47
>CABO-LLG-01-000200 	gi|333410522|gb|EGK69509.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: S-rich region from 178 to 861 corrected with score 70
>CABO-LLG-01-000202 	gi|333410520|gb|EGK69507.1| putative membrane protein [Chlamydophila abortus LLG]: P-rich region from 107 to 155 corrected with score 46
>CABO-LLG-01-000204 	gi|333410518|gb|EGK69505.1| putative TMH family membrane protein [Chlamydophila abortus LLG]: Q-rich region from 96 to 301 corrected with score 97
>CABO-LLG-01-000205 	gi|333410517|gb|EGK69504.1| putative incA family protein [Chlamydophila abortus LLG]: Q-rich region from 84 to 508 corrected with score 125
>CABO-LLG-01-000205 	gi|333410517|gb|EGK69504.1| putative incA family protein [Chlamydophila abortus LLG]: E-rich region from 128 to 368 corrected with score 50
>CABO-LLG-01-000205 	gi|333410517|gb|EGK69504.1| putative incA family protein [Chlamydophila abortus LLG]: Q-rich region from 715 to 792 corrected with score 40
>CABO-LLG-01-000205 	gi|333410517|gb|EGK69504.1| putative incA family protein [Chlamydophila abortus LLG]: I-rich region from 28 to 83 corrected with score 40
>CABO-LLG-01-000206 	gi|333410516|gb|EGK69503.1| putative TMH family membrane protein [Chlamydophila abortus LLG]: E-rich region from 96 to 200 corrected with score 43
>CABO-LLG-01-000207 	gi|333410515|gb|EGK69502.1| putative TMH family membrane protein [Chlamydophila abortus LLG]: E-rich region from 101 to 457 corrected with score 43
>CABO-LLG-01-000207 	gi|333410515|gb|EGK69502.1| putative TMH family membrane protein [Chlamydophila abortus LLG]: V-rich region from 33 to 87 corrected with score 40
>CABO-LLG-01-000208 	gi|333410514|gb|EGK69501.1| hypothetical protein CAB1_0784 [Chlamydophila abortus LLG]: E-rich region from 86 to 234 corrected with score 55
>CABO-LLG-01-000208 	gi|333410514|gb|EGK69501.1| hypothetical protein CAB1_0784 [Chlamydophila abortus LLG]: I-rich region from 28 to 75 corrected with score 46
>CABO-LLG-01-000209 	gi|333410513|gb|EGK69500.1| putative TMH family membrane protein [Chlamydophila abortus LLG]: Q-rich region from 104 to 242 corrected with score 55
>CABO-LLG-01-000209 	gi|333410513|gb|EGK69500.1| putative TMH family membrane protein [Chlamydophila abortus LLG]: V-rich region from 27 to 78 corrected with score 46
>CABO-LLG-01-000210 	gi|333410512|gb|EGK69499.1| putative TMH family membrane protein [Chlamydophila abortus LLG]: I-rich region from 31 to 78 corrected with score 40
>CABO-LLG-01-000216 	gi|333410506|gb|EGK69493.1| putative membrane protein [Chlamydophila abortus LLG]: I-rich region from 141 to 186 corrected with score 46
>CABO-LLG-01-000235 	gi|333410487|gb|EGK69474.1| hypothetical protein CAB1_0755 [Chlamydophila abortus LLG]: E-rich region from 126 to 173 corrected with score 54
>CABO-LLG-01-000245 	gi|333410477|gb|EGK69464.1| hypothetical protein CAB1_0745 [Chlamydophila abortus LLG]: Q-rich region from 87 to 138 corrected with score 51
>CABO-LLG-01-000247 	gi|333410475|gb|EGK69462.1| hypothetical protein CAB1_0743 [Chlamydophila abortus LLG]: Q-rich region from 49 to 125 corrected with score 47
>CABO-LLG-01-000249 	gi|333410473|gb|EGK69460.1| hypothetical protein CAB1_0741 [Chlamydophila abortus LLG]: E-rich region from 259 to 416 corrected with score 45
>CABO-LLG-01-000261 	gi|333410461|gb|EGK69448.1| hypothetical serine-rich protein [Chlamydophila abortus LLG]: S-rich region from 2 to 223 corrected with score 126
>CABO-LLG-01-000261 	gi|333410461|gb|EGK69448.1| hypothetical serine-rich protein [Chlamydophila abortus LLG]: Q-rich region from 232 to 279 corrected with score 72
>CABO-LLG-01-000262 	gi|333410460|gb|EGK69447.1| hypothetical protein CAB1_0728 [Chlamydophila abortus LLG]: S-rich region from 22 to 121 corrected with score 47
>CABO-LLG-01-000264 	gi|333410458|gb|EGK69445.1| putative serine-rich protein [Chlamydophila abortus LLG]: S-rich region from 7 to 284 corrected with score 110
>CABO-LLG-01-000264 	gi|333410458|gb|EGK69445.1| putative serine-rich protein [Chlamydophila abortus LLG]: Q-rich region from 220 to 270 corrected with score 83
>CABO-LLG-01-000265 	gi|333410457|gb|EGK69444.1| lipoprotein [Chlamydophila abortus LLG]: Y-rich region from 56 to 75 corrected with score 50
>CABO-LLG-01-000270 	gi|333410452|gb|EGK69439.1| putative transmembrane protein [Chlamydophila abortus LLG]: L-rich region from 100 to 170 corrected with score 43
>CABO-LLG-01-000295 	gi|333410427|gb|EGK69414.1| putative transmembrane protein [Chlamydophila abortus LLG]: I-rich region from 32 to 80 corrected with score 46
>CABO-LLG-01-000307 	gi|333410415|gb|EGK69402.1| 50S ribosomal protein L7/L12 [Chlamydophila abortus LLG]: A-rich region from 34 to 71 corrected with score 50
>CABO-LLG-01-000312 	gi|333410410|gb|EGK69397.1| hypothetical protein CAB1_0672 [Chlamydophila abortus LLG]: S-rich region from 12 to 77 corrected with score 41
>CABO-LLG-01-000336 	gi|333410386|gb|EGK69373.1| signal peptidase I [Chlamydophila abortus LLG]: Q-rich region from 22 to 64 corrected with score 52
>CABO-LLG-01-000365 	gi|333410357|gb|EGK69344.1| putative ClpB ATPase stress response protein [Chlamydophila abortus LLG]: E-rich region from 412 to 534 corrected with score 67
>CABO-LLG-01-000367 	gi|333410355|gb|EGK69342.1| polymorphic membrane protein [Chlamydophila abortus LLG]: S-rich region from 11 to 462 corrected with score 124
>CABO-LLG-01-000375 	gi|333410347|gb|EGK69334.1| putative transmembrane protein [Chlamydophila abortus LLG]: I-rich region from 73 to 107 corrected with score 44
>CABO-LLG-01-000397 	gi|333410325|gb|EGK69312.1| hypothetical protein CAB1_0578 [Chlamydophila abortus LLG]: E-rich region from 186 to 224 corrected with score 55
>CABO-LLG-01-000408 	gi|333410314|gb|EGK69301.1| hypothetical membrane protein [Chlamydophila abortus LLG]: I-rich region from 37 to 94 corrected with score 41
>CABO-LLG-01-000418 	gi|333410304|gb|EGK69291.1| inclusion membrane protein A [Chlamydophila abortus LLG]: I-rich region from 52 to 117 corrected with score 61
>CABO-LLG-01-000418 	gi|333410304|gb|EGK69291.1| inclusion membrane protein A [Chlamydophila abortus LLG]: S-rich region from 282 to 363 corrected with score 42
>CABO-LLG-01-000432 	gi|333410290|gb|EGK69277.1| 30S ribosomal protein S9 [Chlamydophila abortus LLG]: K-rich region from 92 to 133 corrected with score 46
>CABO-LLG-01-000435 	gi|333410287|gb|EGK69274.1| lipoprotein releasing system transmembrane protein [Chlamydophila abortus LLG]: I-rich region from 360 to 385 corrected with score 40
>CABO-LLG-01-000439 	gi|333410283|gb|EGK69270.1| hypothetical protein CAB1_0526 [Chlamydophila abortus LLG]: S-rich region from 2 to 96 corrected with score 55
>CABO-LLG-01-000446 	gi|333410276|gb|EGK69263.1| putative inner membrane protein [Chlamydophila abortus LLG]: S-rich region from 129 to 366 corrected with score 82
>CABO-LLG-01-000446 	gi|333410276|gb|EGK69263.1| putative inner membrane protein [Chlamydophila abortus LLG]: Q-rich region from 109 to 275 corrected with score 48
>CABO-LLG-01-000446 	gi|333410276|gb|EGK69263.1| putative inner membrane protein [Chlamydophila abortus LLG]: E-rich region from 340 to 365 corrected with score 40
>CABO-LLG-01-000458 	gi|333410264|gb|EGK69251.1| putative membrane protein [Chlamydophila abortus LLG]: S-rich region from 149 to 247 corrected with score 93
>CABO-LLG-01-000458 	gi|333410264|gb|EGK69251.1| putative membrane protein [Chlamydophila abortus LLG]: V-rich region from 50 to 108 corrected with score 43
>CABO-LLG-01-000460 	gi|333410262|gb|EGK69249.1| putative amino acid permease [Chlamydophila abortus LLG]: W-rich region from 81 to 98 corrected with score 40
>CABO-LLG-01-000461 	gi|333410261|gb|EGK69248.1| hypothetical protein CAB1_0497 [Chlamydophila abortus LLG]: I-rich region from 1 to 51 corrected with score 50
>CABO-LLG-01-000464 	gi|333410258|gb|EGK69245.1| putative inner membrane protein [Chlamydophila abortus LLG]: V-rich region from 56 to 101 corrected with score 50
>CABO-LLG-01-000465 	gi|333410257|gb|EGK69244.1| sodium symporter-family membrane transport protein [Chlamydophila abortus LLG]: L-rich region from 12 to 107 corrected with score 40
>CABO-LLG-01-000467 	gi|333410255|gb|EGK69242.1| inclusion membrane protein B [Chlamydophila abortus LLG]: I-rich region from 119 to 186 corrected with score 43
>CABO-LLG-01-000468 	gi|333410254|gb|EGK69241.1| inclusion membrane protein C [Chlamydophila abortus LLG]: V-rich region from 110 to 169 corrected with score 49
>CABO-LLG-01-000477 	gi|333410245|gb|EGK69232.1| hypothetical protein CAB1_0481 [Chlamydophila abortus LLG]: E-rich region from 42 to 106 corrected with score 54
>CABO-LLG-01-000493 	gi|333410229|gb|EGK69216.1| translation initiation factor IF-2 [Chlamydophila abortus LLG]: K-rich region from 146 to 280 corrected with score 63
>CABO-LLG-01-000493 	gi|333410229|gb|EGK69216.1| translation initiation factor IF-2 [Chlamydophila abortus LLG]: S-rich region from 22 to 105 corrected with score 49
>CABO-LLG-01-000498 	gi|333410224|gb|EGK69211.1| type III secretion system inner membrane protein sctV [Chlamydophila abortus LLG]: L-rich region from 27 to 91 corrected with score 54
>CABO-LLG-01-000499 	gi|333410223|gb|EGK69210.1| secretion and cellular translocation protein sctW [Chlamydophila abortus LLG]: A-rich region from 2 to 36 corrected with score 43
>CABO-LLG-01-000499 	gi|333410223|gb|EGK69210.1| secretion and cellular translocation protein sctW [Chlamydophila abortus LLG]: E-rich region from 26 to 126 corrected with score 40
>CABO-LLG-01-000504 	gi|333410218|gb|EGK69205.1| hypothetical protein CAB1_0452 [Chlamydophila abortus LLG]: K-rich region from 51 to 71 corrected with score 41
>CABO-LLG-01-000505 	gi|333410217|gb|EGK69204.1| hypothetical protein CAB1_0451 [Chlamydophila abortus LLG]: S-rich region from 4 to 465 corrected with score 136
>CABO-LLG-01-000506 	gi|333410216|gb|EGK69203.1| late transcription unit B protein [Chlamydophila abortus LLG]: K-rich region from 5 to 53 corrected with score 58
>CABO-LLG-01-000522 	gi|333410200|gb|EGK69187.1| GTP-binding protein (Elongation factor) [Chlamydophila abortus LLG]: K-rich region from 567 to 587 corrected with score 41
>CABO-LLG-01-000526 	gi|333410196|gb|EGK69183.1| type III secretion system protein [Chlamydophila abortus LLG]: L-rich region from 9 to 85 corrected with score 42
>CABO-LLG-01-000528 	gi|333410194|gb|EGK69181.1| putative membrane protein [Chlamydophila abortus LLG]: P-rich region from 89 to 158 corrected with score 74
>CABO-LLG-01-000535 	gi|333410187|gb|EGK69174.1| hypothetical protein CAB1_0418 [Chlamydophila abortus LLG]: E-rich region from 27 to 127 corrected with score 70
>CABO-LLG-01-000537 	gi|333410185|gb|EGK69172.1| hypothetical protein CAB1_0416 [Chlamydophila abortus LLG]: P-rich region from 262 to 299 corrected with score 88
>CABO-LLG-01-000537 	gi|333410185|gb|EGK69172.1| hypothetical protein CAB1_0416 [Chlamydophila abortus LLG]: S-rich region from 2 to 406 corrected with score 77
>CABO-LLG-01-000537 	gi|333410185|gb|EGK69172.1| hypothetical protein CAB1_0416 [Chlamydophila abortus LLG]: P-rich region from 166 to 185 corrected with score 41
>CABO-LLG-01-000538 	gi|333410184|gb|EGK69171.1| hypothetical protein CAB1_0415 [Chlamydophila abortus LLG]: P-rich region from 352 to 376 corrected with score 86
>CABO-LLG-01-000542 	gi|333410180|gb|EGK69167.1| histone-like protein [Chlamydophila abortus LLG]: K-rich region from 5 to 139 corrected with score 107
>CABO-LLG-01-000542 	gi|333410180|gb|EGK69167.1| histone-like protein [Chlamydophila abortus LLG]: A-rich region from 9 to 141 corrected with score 66
>CABO-LLG-01-000546 	gi|333410176|gb|EGK69163.1| putative glycosyl hydrolase [Chlamydophila abortus LLG]: N-rich region from 449 to 480 corrected with score 41
>CABO-LLG-01-000556 	gi|333410166|gb|EGK69153.1| hypothetical protein CAB1_0397 [Chlamydophila abortus LLG]: V-rich region from 40 to 84 corrected with score 48
>CABO-LLG-01-000562 	gi|333410160|gb|EGK69147.1| hypothetical protein CAB1_0389 [Chlamydophila abortus LLG]: S-rich region from 18 to 103 corrected with score 53
>CABO-LLG-01-000580 	gi|333410142|gb|EGK69129.1| hypothetical protein CAB1_0370 [Chlamydophila abortus LLG]: E-rich region from 128 to 149 corrected with score 41
>CABO-LLG-01-000595 	gi|333410127|gb|EGK69114.1| negative regulator of genetic competence clpc/mecb [Chlamydophila abortus LLG]: E-rich region from 431 to 497 corrected with score 51
>CABO-LLG-01-000595 	gi|333410127|gb|EGK69114.1| negative regulator of genetic competence clpc/mecb [Chlamydophila abortus LLG]: S-rich region from 153 to 185 corrected with score 48
>CABO-LLG-01-000597 	gi|333410125|gb|EGK69112.1| putative membrane protein [Chlamydophila abortus LLG]: I-rich region from 68 to 121 corrected with score 43
>CABO-LLG-01-000600 	gi|333410122|gb|EGK69109.1| hypothetical protein CAB1_0350 [Chlamydophila abortus LLG]: K-rich region from 47 to 370 corrected with score 79
>CABO-LLG-01-000600 	gi|333410122|gb|EGK69109.1| hypothetical protein CAB1_0350 [Chlamydophila abortus LLG]: S-rich region from 328 to 467 corrected with score 53
>CABO-LLG-01-000606 	gi|333410116|gb|EGK69103.1| putative phosphomannomutase [Chlamydophila abortus LLG]: E-rich region from 568 to 601 corrected with score 44
>CABO-LLG-01-000623 	gi|333410099|gb|EGK69086.1| molecular chaperone protein [Chlamydophila abortus LLG]: G-rich region from 67 to 133 corrected with score 60
>CABO-LLG-01-000624 	gi|333410098|gb|EGK69085.1| 30S ribosomal protein S21 [Chlamydophila abortus LLG]: K-rich region from 20 to 58 corrected with score 40
>CABO-LLG-01-000627 	gi|333410095|gb|EGK69082.1| putative serine rich exported protein [Chlamydophila abortus LLG]: S-rich region from 155 to 194 corrected with score 55
>CABO-LLG-01-000627 	gi|333410095|gb|EGK69082.1| putative serine rich exported protein [Chlamydophila abortus LLG]: Q-rich region from 121 to 153 corrected with score 45
>CABO-LLG-01-000630 	gi|333410092|gb|EGK69079.1| putative ABC transporter, ATP-binding component [Chlamydophila abortus LLG]: K-rich region from 244 to 305 corrected with score 42
>CABO-LLG-01-000650 	gi|333410072|gb|EGK69059.1| putative inner membrane protein [Chlamydophila abortus LLG]: S-rich region from 213 to 394 corrected with score 55
>CABO-LLG-01-000650 	gi|333410072|gb|EGK69059.1| putative inner membrane protein [Chlamydophila abortus LLG]: E-rich region from 367 to 408 corrected with score 43
>CABO-LLG-01-000655 	gi|333410067|gb|EGK69054.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: S-rich region from 23 to 977 corrected with score 343
>CABO-LLG-01-000655 	gi|333410067|gb|EGK69054.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: E-rich region from 93 to 229 corrected with score 83
>CABO-LLG-01-000655 	gi|333410067|gb|EGK69054.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: A-rich region from 733 to 803 corrected with score 41
>CABO-LLG-01-000656 	gi|333410066|gb|EGK69053.1| polymorphic membrane protein [Chlamydophila abortus LLG]: S-rich region from 11 to 291 corrected with score 100
>CABO-LLG-01-000658 	gi|333410064|gb|EGK69051.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: S-rich region from 17 to 253 corrected with score 63
>CABO-LLG-01-000659 	gi|333410063|gb|EGK69050.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: S-rich region from 12 to 243 corrected with score 65
>CABO-LLG-01-000660 	gi|333410062|gb|EGK69049.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: S-rich region from 47 to 632 corrected with score 107
>CABO-LLG-01-000660 	gi|333410062|gb|EGK69049.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: P-rich region from 242 to 251 corrected with score 54
>CABO-LLG-01-000661 	gi|333410061|gb|EGK69048.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: S-rich region from 61 to 596 corrected with score 86
>CABO-LLG-01-000661 	gi|333410061|gb|EGK69048.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: T-rich region from 129 to 183 corrected with score 40
>CABO-LLG-01-000663 	gi|333410059|gb|EGK69046.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: N-rich region from 214 to 378 corrected with score 64
>CABO-LLG-01-000664 	gi|333410058|gb|EGK69045.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: S-rich region from 52 to 287 corrected with score 60
>CABO-LLG-01-000665 	gi|333410057|gb|EGK69044.1| hypothetical serine rich protein [Chlamydophila abortus LLG]: P-rich region from 639 to 653 corrected with score 43
>CABO-LLG-01-000670 	gi|333410052|gb|EGK69039.1| putative GTP-binding protein [Chlamydophila abortus LLG]: K-rich region from 183 to 225 corrected with score 40
>CABO-LLG-01-000674 	gi|333410048|gb|EGK69035.1| hypothetical protein CAB1_0270 [Chlamydophila abortus LLG]: P-rich region from 66 to 205 corrected with score 160
>CABO-LLG-01-000692 	gi|333410030|gb|EGK69017.1| heat shock chaperone protein [Chlamydophila abortus LLG]: E-rich region from 493 to 652 corrected with score 66
>CABO-LLG-01-000692 	gi|333410030|gb|EGK69017.1| heat shock chaperone protein [Chlamydophila abortus LLG]: S-rich region from 585 to 645 corrected with score 40
>CABO-LLG-01-000706 	gi|333410016|gb|EGK69003.1| hypothetical protein CAB1_0237 [Chlamydophila abortus LLG]: D-rich region from 304 to 312 corrected with score 44
>CABO-LLG-01-000711 	gi|333410011|gb|EGK68998.1| hypothetical protein CAB1_0232 [Chlamydophila abortus LLG]: V-rich region from 33 to 74 corrected with score 43
>CABO-LLG-01-000713 	gi|333410009|gb|EGK68996.1| hypothetical protein CAB1_0230 [Chlamydophila abortus LLG]: E-rich region from 25 to 174 corrected with score 58
>CABO-LLG-01-000728 	gi|333409994|gb|EGK68981.1| polymorphic outer membrane protein [Chlamydophila abortus LLG]: S-rich region from 25 to 1255 corrected with score 191
>CABO-LLG-01-000733 	gi|333409989|gb|EGK68976.1| putative transport protein [Chlamydophila abortus LLG]: M-rich region from 141 to 237 corrected with score 61
>CABO-LLG-01-000734 	gi|333409988|gb|EGK68975.1| putative GTP-binding protein [Chlamydophila abortus LLG]: G-rich region from 31 to 43 corrected with score 40
>CABO-LLG-01-000763 	gi|333409959|gb|EGK68946.1| hypothetical protein CAB1_0178 [Chlamydophila abortus LLG]: T-rich region from 11 to 143 corrected with score 130
>CABO-LLG-01-000763 	gi|333409959|gb|EGK68946.1| hypothetical protein CAB1_0178 [Chlamydophila abortus LLG]: T-rich region from 382 to 432 corrected with score 72
>CABO-LLG-01-000763 	gi|333409959|gb|EGK68946.1| hypothetical protein CAB1_0178 [Chlamydophila abortus LLG]: P-rich region from 452 to 466 corrected with score 71
>CABO-LLG-01-000763 	gi|333409959|gb|EGK68946.1| hypothetical protein CAB1_0178 [Chlamydophila abortus LLG]: S-rich region from 58 to 144 corrected with score 53
>CABO-LLG-01-000763 	gi|333409959|gb|EGK68946.1| hypothetical protein CAB1_0178 [Chlamydophila abortus LLG]: S-rich region from 618 to 867 corrected with score 53
>CABO-LLG-01-000763 	gi|333409959|gb|EGK68946.1| hypothetical protein CAB1_0178 [Chlamydophila abortus LLG]: D-rich region from 405 to 449 corrected with score 40
>CABO-LLG-01-000775 	gi|333409947|gb|EGK68934.1| conserved membrane protein [Chlamydophila abortus LLG]: E-rich region from 314 to 715 corrected with score 88
>CABO-LLG-01-000777 	gi|333409945|gb|EGK68932.1| hypothetical protein CAB1_0161 [Chlamydophila abortus LLG]: K-rich region from 96 to 125 corrected with score 41
>CABO-LLG-01-000790 	gi|333409932|gb|EGK68919.1| hypothetical protein CAB1_0147 [Chlamydophila abortus LLG]: E-rich region from 35 to 66 corrected with score 45
>CABO-LLG-01-000804 	gi|333409918|gb|EGK68905.1| putative nucleoside triphosphate transport protein 2 [Chlamydophila abortus LLG]: I-rich region from 474 to 506 corrected with score 45
>CABO-LLG-01-000812 	gi|333409910|gb|EGK68897.1| hypothetical protein CAB1_0124 [Chlamydophila abortus LLG]: E-rich region from 98 to 246 corrected with score 40
>CABO-LLG-01-000813 	gi|333409909|gb|EGK68896.1| hypothetical protein CAB1_0122 [Chlamydophila abortus LLG]: K-rich region from 135 to 160 corrected with score 59
>CABO-LLG-01-000817 	gi|333409905|gb|EGK68892.1| 30S ribosomal protein S11 [Chlamydophila abortus LLG]: A-rich region from 48 to 112 corrected with score 41
>CABO-LLG-01-000854 	gi|333409868|gb|EGK68855.1| putative hexose phosphate transport protein [Chlamydophila abortus LLG]: E-rich region from 221 to 252 corrected with score 43
>CABO-LLG-01-000854 	gi|333409868|gb|EGK68855.1| putative hexose phosphate transport protein [Chlamydophila abortus LLG]: W-rich region from 127 to 139 corrected with score 40
>CABO-LLG-01-000854 	gi|333409868|gb|EGK68855.1| putative hexose phosphate transport protein [Chlamydophila abortus LLG]: Y-rich region from 27 to 47 corrected with score 40
>CABO-LLG-01-000864 	gi|333409858|gb|EGK68845.1| hypothetical protein CAB1_0068 [Chlamydophila abortus LLG]: S-rich region from 4 to 268 corrected with score 168
>CABO-LLG-01-000864 	gi|333409858|gb|EGK68845.1| hypothetical protein CAB1_0068 [Chlamydophila abortus LLG]: P-rich region from 166 to 189 corrected with score 56
>CABO-LLG-01-000883 	gi|333409839|gb|EGK68826.1| ribosome recycling factor [Chlamydophila abortus LLG]: K-rich region from 113 to 174 corrected with score 42
>CABO-LLG-01-000886 	gi|333409836|gb|EGK68823.1| putative type II/III secretion system protein [Chlamydophila abortus LLG]: K-rich region from 40 to 242 corrected with score 56
>CABO-LLG-01-000889 	gi|333409833|gb|EGK68820.1| putative membrane protein [Chlamydophila abortus LLG]: E-rich region from 21 to 89 corrected with score 62
>CABO-LLG-01-000889 	gi|333409833|gb|EGK68820.1| putative membrane protein [Chlamydophila abortus LLG]: Q-rich region from 251 to 280 corrected with score 55
>CABO-LLG-01-000891 	gi|333409831|gb|EGK68818.1| hypothetical protein CAB1_0036 [Chlamydophila abortus LLG]: E-rich region from 72 to 149 corrected with score 43
>CABO-LLG-01-000895 	gi|333409827|gb|EGK68814.1| putative membrane protein [Chlamydophila abortus LLG]: E-rich region from 99 to 308 corrected with score 158
>CABO-LLG-01-000895 	gi|333409827|gb|EGK68814.1| putative membrane protein [Chlamydophila abortus LLG]: S-rich region from 113 to 244 corrected with score 52
>CABO-LLG-01-000898 	gi|333409824|gb|EGK68811.1| DNA topoisomerase IV subunit B [Chlamydophila abortus LLG]: K-rich region from 322 to 381 corrected with score 44
>CABO-LLG-01-000909 	gi|333409813|gb|EGK68800.1| hypothetical protein CAB1_0017 [Chlamydophila abortus LLG]: Q-rich region from 812 to 841 corrected with score 46
>CABO-LLG-01-000909 	gi|333409813|gb|EGK68800.1| hypothetical protein CAB1_0017 [Chlamydophila abortus LLG]: S-rich region from 321 to 609 corrected with score 46
>CABO-LLG-01-000910 	gi|333409812|gb|EGK68799.1| hypothetical protein CAB1_0016 [Chlamydophila abortus LLG]: S-rich region from 9 to 535 corrected with score 94
>CABO-S26-01-000014 	gi|62184662|ref|YP_219447.1| hypothetical protein CAB015 [Chlamydophila abortus S26/3]: S-rich region from 9 to 535 corrected with score 84
>CABO-S26-01-000015 	gi|62184663|ref|YP_219448.1| hypothetical protein CAB016 [Chlamydophila abortus S26/3]: S-rich region from 348 to 609 corrected with score 49
>CABO-S26-01-000015 	gi|62184663|ref|YP_219448.1| hypothetical protein CAB016 [Chlamydophila abortus S26/3]: Q-rich region from 812 to 841 corrected with score 46
>CABO-S26-01-000030 	gi|62184678|ref|YP_219463.1| hypothetical protein CAB031 [Chlamydophila abortus S26/3]: E-rich region from 99 to 308 corrected with score 153
>CABO-S26-01-000030 	gi|62184678|ref|YP_219463.1| hypothetical protein CAB031 [Chlamydophila abortus S26/3]: S-rich region from 113 to 244 corrected with score 51
>CABO-S26-01-000034 	gi|62184682|ref|YP_219467.1| hypothetical protein CAB035 [Chlamydophila abortus S26/3]: E-rich region from 72 to 149 corrected with score 42
>CABO-S26-01-000036 	gi|62184684|ref|YP_219469.1| hypothetical protein CAB037 [Chlamydophila abortus S26/3]: E-rich region from 13 to 170 corrected with score 92
>CABO-S26-01-000037 	gi|62184685|ref|YP_219470.1| hypothetical protein CAB038 [Chlamydophila abortus S26/3]: Q-rich region from 251 to 280 corrected with score 55
>CABO-S26-01-000037 	gi|62184685|ref|YP_219470.1| hypothetical protein CAB038 [Chlamydophila abortus S26/3]: E-rich region from 21 to 89 corrected with score 55
>CABO-S26-01-000040 	gi|62184688|ref|YP_219473.1| putative general secretion protein [Chlamydophila abortus S26/3]: K-rich region from 40 to 241 corrected with score 59
>CABO-S26-01-000043 	gi|62184691|ref|YP_219476.1| ribosome recycling factor [Chlamydophila abortus S26/3]: K-rich region from 113 to 174 corrected with score 46
>CABO-S26-01-000062 	gi|62184710|ref|YP_219495.1| hypothetical protein CAB063 [Chlamydophila abortus S26/3]: S-rich region from 4 to 262 corrected with score 168
>CABO-S26-01-000062 	gi|62184710|ref|YP_219495.1| hypothetical protein CAB063 [Chlamydophila abortus S26/3]: P-rich region from 160 to 183 corrected with score 56
>CABO-S26-01-000072 	gi|62184720|ref|YP_219505.1| putative hexose phosphate transport protein [Chlamydophila abortus S26/3]: E-rich region from 221 to 252 corrected with score 43
>CABO-S26-01-000072 	gi|62184720|ref|YP_219505.1| putative hexose phosphate transport protein [Chlamydophila abortus S26/3]: W-rich region from 127 to 139 corrected with score 40
>CABO-S26-01-000072 	gi|62184720|ref|YP_219505.1| putative hexose phosphate transport protein [Chlamydophila abortus S26/3]: Y-rich region from 27 to 47 corrected with score 40
>CABO-S26-01-000109 	gi|62184757|ref|YP_219542.1| 30S ribosomal protein S11 [Chlamydophila abortus S26/3]: A-rich region from 48 to 112 corrected with score 41
>CABO-S26-01-000113 	gi|62184761|ref|YP_219546.1| hypothetical protein CAB116 [Chlamydophila abortus S26/3]: K-rich region from 135 to 160 corrected with score 59
>CABO-S26-01-000122 	gi|62184770|ref|YP_219555.1| putative nucleoside triphosphate transport protein 2 [Chlamydophila abortus S26/3]: I-rich region from 474 to 506 corrected with score 45
>CABO-S26-01-000136 	gi|62184784|ref|YP_219569.1| putative lipoprotein [Chlamydophila abortus S26/3]: E-rich region from 35 to 66 corrected with score 41
>CABO-S26-01-000149 	gi|62184797|ref|YP_219582.1| hypothetical protein CAB152 [Chlamydophila abortus S26/3]: K-rich region from 96 to 125 corrected with score 41
>CABO-S26-01-000151 	gi|62184799|ref|YP_219584.1| hypothetical protein CAB154 [Chlamydophila abortus S26/3]: E-rich region from 314 to 715 corrected with score 91
>CABO-S26-01-000163 	gi|62184811|ref|YP_219596.1| hypothetical protein CAB167 [Chlamydophila abortus S26/3]: T-rich region from 11 to 143 corrected with score 131
>CABO-S26-01-000163 	gi|62184811|ref|YP_219596.1| hypothetical protein CAB167 [Chlamydophila abortus S26/3]: T-rich region from 382 to 432 corrected with score 72
>CABO-S26-01-000163 	gi|62184811|ref|YP_219596.1| hypothetical protein CAB167 [Chlamydophila abortus S26/3]: S-rich region from 25 to 145 corrected with score 54
>CABO-S26-01-000163 	gi|62184811|ref|YP_219596.1| hypothetical protein CAB167 [Chlamydophila abortus S26/3]: S-rich region from 612 to 861 corrected with score 50
>CABO-S26-01-000163 	gi|62184811|ref|YP_219596.1| hypothetical protein CAB167 [Chlamydophila abortus S26/3]: P-rich region from 452 to 460 corrected with score 46
>CABO-S26-01-000163 	gi|62184811|ref|YP_219596.1| hypothetical protein CAB167 [Chlamydophila abortus S26/3]: D-rich region from 405 to 449 corrected with score 40
>CABO-S26-01-000190 	gi|62184838|ref|YP_219623.1| GTPase ObgE [Chlamydophila abortus S26/3]: G-rich region from 31 to 43 corrected with score 40
>CABO-S26-01-000191 	gi|62184839|ref|YP_219624.1| putative transport protein [Chlamydophila abortus S26/3]: M-rich region from 141 to 237 corrected with score 60
>CABO-S26-01-000196 	gi|62184844|ref|YP_219629.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 25 to 1255 corrected with score 189
>CABO-S26-01-000196 	gi|62184844|ref|YP_219629.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: P-rich region from 74 to 91 corrected with score 44
>CABO-S26-01-000211 	gi|62184859|ref|YP_219644.1| hypothetical protein CAB216 [Chlamydophila abortus S26/3]: E-rich region from 25 to 174 corrected with score 58
>CABO-S26-01-000213 	gi|62184861|ref|YP_219646.1| hypothetical protein CAB218 [Chlamydophila abortus S26/3]: V-rich region from 33 to 74 corrected with score 43
>CABO-S26-01-000218 	gi|62184866|ref|YP_219651.1| hypothetical protein CAB224 [Chlamydophila abortus S26/3]: D-rich region from 304 to 312 corrected with score 44
>CABO-S26-01-000231 	gi|62184879|ref|YP_219664.1| molecular chaperone DnaK [Chlamydophila abortus S26/3]: E-rich region from 493 to 652 corrected with score 70
>CABO-S26-01-000231 	gi|62184879|ref|YP_219664.1| molecular chaperone DnaK [Chlamydophila abortus S26/3]: S-rich region from 585 to 645 corrected with score 40
>CABO-S26-01-000248 	gi|62184896|ref|YP_219681.1| hypothetical protein CAB255 [Chlamydophila abortus S26/3]: P-rich region from 66 to 232 corrected with score 203
>CABO-S26-01-000252 	gi|62184900|ref|YP_219685.1| putative GTP-binding protein [Chlamydophila abortus S26/3]: K-rich region from 183 to 225 corrected with score 40
>CABO-S26-01-000257 	gi|62184905|ref|YP_219690.1| hypothetical protein CAB264 [Chlamydophila abortus S26/3]: P-rich region from 639 to 653 corrected with score 43
>CABO-S26-01-000258 	gi|62184906|ref|YP_219691.1| polymorphic outer membrane lipoprotein [Chlamydophila abortus S26/3]: S-rich region from 52 to 287 corrected with score 63
>CABO-S26-01-000259 	gi|62184907|ref|YP_219692.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: N-rich region from 214 to 378 corrected with score 64
>CABO-S26-01-000261 	gi|62184909|ref|YP_219694.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 61 to 596 corrected with score 84
>CABO-S26-01-000261 	gi|62184909|ref|YP_219694.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: T-rich region from 129 to 183 corrected with score 40
>CABO-S26-01-000262 	gi|62184910|ref|YP_219695.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 47 to 663 corrected with score 116
>CABO-S26-01-000262 	gi|62184910|ref|YP_219695.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: P-rich region from 242 to 251 corrected with score 54
>CABO-S26-01-000263 	gi|62184911|ref|YP_219696.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 12 to 243 corrected with score 61
>CABO-S26-01-000264 	gi|62184912|ref|YP_219697.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 17 to 253 corrected with score 54
>CABO-S26-01-000265 	gi|62184913|ref|YP_219698.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 11 to 282 corrected with score 104
>CABO-S26-01-000265 	gi|62184913|ref|YP_219698.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: T-rich region from 361 to 510 corrected with score 43
>CABO-S26-01-000266 	gi|62184914|ref|YP_219699.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 11 to 291 corrected with score 100
>CABO-S26-01-000267 	gi|62184915|ref|YP_219700.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 23 to 977 corrected with score 340
>CABO-S26-01-000267 	gi|62184915|ref|YP_219700.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: E-rich region from 93 to 229 corrected with score 81
>CABO-S26-01-000267 	gi|62184915|ref|YP_219700.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: A-rich region from 733 to 803 corrected with score 41
>CABO-S26-01-000272 	gi|62184920|ref|YP_219705.1| putative inner membrane protein [Chlamydophila abortus S26/3]: S-rich region from 213 to 394 corrected with score 59
>CABO-S26-01-000272 	gi|62184920|ref|YP_219705.1| putative inner membrane protein [Chlamydophila abortus S26/3]: E-rich region from 370 to 408 corrected with score 40
>CABO-S26-01-000298 	gi|62184946|ref|YP_219731.1| putative serine rich exported protein [Chlamydophila abortus S26/3]: S-rich region from 155 to 202 corrected with score 60
>CABO-S26-01-000298 	gi|62184946|ref|YP_219731.1| putative serine rich exported protein [Chlamydophila abortus S26/3]: Q-rich region from 121 to 150 corrected with score 40
>CABO-S26-01-000301 	gi|62184949|ref|YP_219734.1| 30S ribosomal protein S21 [Chlamydophila abortus S26/3]: K-rich region from 20 to 58 corrected with score 40
>CABO-S26-01-000302 	gi|62184950|ref|YP_219735.1| molecular chaperone protein [Chlamydophila abortus S26/3]: G-rich region from 67 to 133 corrected with score 53
>CABO-S26-01-000318 	gi|62184966|ref|YP_219751.1| putative phosphomannomutase [Chlamydophila abortus S26/3]: E-rich region from 568 to 601 corrected with score 44
>CABO-S26-01-000324 	gi|62184972|ref|YP_219757.1| hypothetical protein CAB341 [Chlamydophila abortus S26/3]: K-rich region from 51 to 370 corrected with score 82
>CABO-S26-01-000324 	gi|62184972|ref|YP_219757.1| hypothetical protein CAB341 [Chlamydophila abortus S26/3]: S-rich region from 328 to 467 corrected with score 53
>CABO-S26-01-000327 	gi|62184975|ref|YP_219760.1| putative inner membrane protein [Chlamydophila abortus S26/3]: I-rich region from 68 to 121 corrected with score 43
>CABO-S26-01-000329 	gi|62184977|ref|YP_219762.1| negative regulator of genetic competence clpc/mecb [Chlamydophila abortus S26/3]: E-rich region from 431 to 497 corrected with score 51
>CABO-S26-01-000329 	gi|62184977|ref|YP_219762.1| negative regulator of genetic competence clpc/mecb [Chlamydophila abortus S26/3]: S-rich region from 153 to 185 corrected with score 48
>CABO-S26-01-000343 	gi|62184991|ref|YP_219776.1| hypothetical protein CAB360 [Chlamydophila abortus S26/3]: E-rich region from 128 to 149 corrected with score 41
>CABO-S26-01-000360 	gi|62185008|ref|YP_219793.1| hypothetical protein CAB376 [Chlamydophila abortus S26/3]: S-rich region from 18 to 103 corrected with score 53
>CABO-S26-01-000375 	gi|62185023|ref|YP_219808.1| putative glycosyl hydrolase [Chlamydophila abortus S26/3]: N-rich region from 449 to 480 corrected with score 41
>CABO-S26-01-000379 	gi|62185027|ref|YP_219812.1| histone-like protein [Chlamydophila abortus S26/3]: K-rich region from 5 to 139 corrected with score 107
>CABO-S26-01-000379 	gi|62185027|ref|YP_219812.1| histone-like protein [Chlamydophila abortus S26/3]: A-rich region from 9 to 141 corrected with score 66
>CABO-S26-01-000383 	gi|62185031|ref|YP_219816.1| hypothetical protein CAB402 [Chlamydophila abortus S26/3]: P-rich region from 352 to 376 corrected with score 85
>CABO-S26-01-000384 	gi|62185032|ref|YP_219817.1| hypothetical protein CAB403 [Chlamydophila abortus S26/3]: P-rich region from 262 to 299 corrected with score 96
>CABO-S26-01-000384 	gi|62185032|ref|YP_219817.1| hypothetical protein CAB403 [Chlamydophila abortus S26/3]: S-rich region from 2 to 406 corrected with score 72
>CABO-S26-01-000384 	gi|62185032|ref|YP_219817.1| hypothetical protein CAB403 [Chlamydophila abortus S26/3]: P-rich region from 166 to 185 corrected with score 41
>CABO-S26-01-000386 	gi|62185034|ref|YP_219819.1| hypothetical protein CAB405 [Chlamydophila abortus S26/3]: E-rich region from 27 to 127 corrected with score 70
>CABO-S26-01-000393 	gi|62185041|ref|YP_219826.1| putative inner membrane protein [Chlamydophila abortus S26/3]: P-rich region from 89 to 158 corrected with score 74
>CABO-S26-01-000400 	gi|62185048|ref|YP_219833.1| GTP-binding protein LepA [Chlamydophila abortus S26/3]: K-rich region from 567 to 587 corrected with score 41
>CABO-S26-01-000401 	gi|62185049|ref|YP_219834.1| putative inner membrane protein [Chlamydophila abortus S26/3]: I-rich region from 32 to 82 corrected with score 52
>CABO-S26-01-000417 	gi|62185065|ref|YP_219850.1| late transcription unit B protein [Chlamydophila abortus S26/3]: K-rich region from 5 to 53 corrected with score 58
>CABO-S26-01-000418 	gi|62185066|ref|YP_219851.1| hypothetical protein CAB437 [Chlamydophila abortus S26/3]: S-rich region from 4 to 465 corrected with score 137
>CABO-S26-01-000419 	gi|62185067|ref|YP_219852.1| hypothetical protein CAB438 [Chlamydophila abortus S26/3]: K-rich region from 51 to 71 corrected with score 40
>CABO-S26-01-000425 	gi|62185073|ref|YP_219858.1| hypothetical protein CAB444 [Chlamydophila abortus S26/3]: A-rich region from 2 to 36 corrected with score 43
>CABO-S26-01-000425 	gi|62185073|ref|YP_219858.1| hypothetical protein CAB444 [Chlamydophila abortus S26/3]: E-rich region from 26 to 126 corrected with score 40
>CABO-S26-01-000426 	gi|62185074|ref|YP_219859.1| putative membrane transport protein [Chlamydophila abortus S26/3]: L-rich region from 27 to 91 corrected with score 54
>CABO-S26-01-000427 	gi|62185075|ref|YP_219860.1| type III secretion system protein [Chlamydophila abortus S26/3]: V-rich region from 134 to 204 corrected with score 40
>CABO-S26-01-000432 	gi|62185080|ref|YP_219865.1| translation initiation factor IF-2 [Chlamydophila abortus S26/3]: K-rich region from 146 to 280 corrected with score 59
>CABO-S26-01-000432 	gi|62185080|ref|YP_219865.1| translation initiation factor IF-2 [Chlamydophila abortus S26/3]: S-rich region from 22 to 105 corrected with score 49
>CABO-S26-01-000448 	gi|62185096|ref|YP_219881.1| hypothetical protein CAB467 [Chlamydophila abortus S26/3]: E-rich region from 42 to 106 corrected with score 54
>CABO-S26-01-000457 	gi|62185105|ref|YP_219890.1| inclusion membrane protein C [Chlamydophila abortus S26/3]: V-rich region from 110 to 169 corrected with score 49
>CABO-S26-01-000458 	gi|62185106|ref|YP_219891.1| inclusion membrane protein B [Chlamydophila abortus S26/3]: I-rich region from 119 to 186 corrected with score 43
>CABO-S26-01-000460 	gi|62185108|ref|YP_219893.1| sodium symporter family membrane transport protein [Chlamydophila abortus S26/3]: L-rich region from 12 to 107 corrected with score 40
>CABO-S26-01-000461 	gi|62185109|ref|YP_219894.1| putative inner membrane protein [Chlamydophila abortus S26/3]: V-rich region from 56 to 101 corrected with score 51
>CABO-S26-01-000464 	gi|62185112|ref|YP_219897.1| hypothetical protein CAB484 [Chlamydophila abortus S26/3]: I-rich region from 1 to 51 corrected with score 50
>CABO-S26-01-000467 	gi|62185115|ref|YP_219900.1| putative inner membrane protein [Chlamydophila abortus S26/3]: S-rich region from 149 to 243 corrected with score 95
>CABO-S26-01-000467 	gi|62185115|ref|YP_219900.1| putative inner membrane protein [Chlamydophila abortus S26/3]: V-rich region from 50 to 108 corrected with score 43
>CABO-S26-01-000471 	gi|62185119|ref|YP_219904.1| hypothetical protein CAB491 [Chlamydophila abortus S26/3]: V-rich region from 104 to 152 corrected with score 42
>CABO-S26-01-000480 	gi|62185128|ref|YP_219913.1| putative inner membrane protein [Chlamydophila abortus S26/3]: S-rich region from 129 to 366 corrected with score 78
>CABO-S26-01-000480 	gi|62185128|ref|YP_219913.1| putative inner membrane protein [Chlamydophila abortus S26/3]: Q-rich region from 109 to 275 corrected with score 48
>CABO-S26-01-000480 	gi|62185128|ref|YP_219913.1| putative inner membrane protein [Chlamydophila abortus S26/3]: E-rich region from 340 to 365 corrected with score 40
>CABO-S26-01-000489 	gi|62185137|ref|YP_219922.1| hypothetical protein CAB509 [Chlamydophila abortus S26/3]: S-rich region from 2 to 96 corrected with score 43
>CABO-S26-01-000494 	gi|62185142|ref|YP_219927.1| lipoprotein releasing system transmembrane protein [Chlamydophila abortus S26/3]: I-rich region from 360 to 385 corrected with score 40
>CABO-S26-01-000497 	gi|62185145|ref|YP_219930.1| 30S ribosomal protein S9 [Chlamydophila abortus S26/3]: K-rich region from 92 to 133 corrected with score 46
>CABO-S26-01-000513 	gi|62185161|ref|YP_219946.1| inclusion membrane protein [Chlamydophila abortus S26/3]: I-rich region from 52 to 117 corrected with score 59
>CABO-S26-01-000525 	gi|62185173|ref|YP_219958.1| hypothetical protein CAB554 [Chlamydophila abortus S26/3]: I-rich region from 37 to 94 corrected with score 41
>CABO-S26-01-000534 	gi|62185182|ref|YP_219967.1| hypothetical protein CAB565 [Chlamydophila abortus S26/3]: E-rich region from 171 to 224 corrected with score 55
>CABO-S26-01-000556 	gi|62185204|ref|YP_219989.1| putative transmembrane protein [Chlamydophila abortus S26/3]: I-rich region from 73 to 107 corrected with score 45
>CABO-S26-01-000564 	gi|62185212|ref|YP_219997.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 11 to 468 corrected with score 106
>CABO-S26-01-000564 	gi|62185212|ref|YP_219997.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: T-rich region from 357 to 501 corrected with score 57
>CABO-S26-01-000565 	gi|62185213|ref|YP_219998.1| putative ClpB ATPase stress response protein [Chlamydophila abortus S26/3]: E-rich region from 412 to 534 corrected with score 67
>CABO-S26-01-000581 	gi|62185229|ref|YP_220014.1| hypothetical protein CAB617 [Chlamydophila abortus S26/3]: V-rich region from 31 to 79 corrected with score 40
>CABO-S26-01-000598 	gi|62185246|ref|YP_220031.1| signal peptidase I [Chlamydophila abortus S26/3]: Q-rich region from 22 to 64 corrected with score 52
>CABO-S26-01-000622 	gi|62185270|ref|YP_220055.1| hypothetical protein CAB657 [Chlamydophila abortus S26/3]: S-rich region from 12 to 77 corrected with score 41
>CABO-S26-01-000627 	gi|161501893|ref|YP_220060.2| 50S ribosomal protein L7/L12 [Chlamydophila abortus S26/3]: A-rich region from 34 to 71 corrected with score 49
>CABO-S26-01-000639 	gi|62185287|ref|YP_220072.1| putative transmembrane protein [Chlamydophila abortus S26/3]: I-rich region from 32 to 80 corrected with score 46
>CABO-S26-01-000665 	gi|62185313|ref|YP_220098.1| putative transmembrane protein [Chlamydophila abortus S26/3]: L-rich region from 100 to 170 corrected with score 43
>CABO-S26-01-000670 	gi|62185318|ref|YP_220103.1| lipoprotein [Chlamydophila abortus S26/3]: Y-rich region from 56 to 75 corrected with score 50
>CABO-S26-01-000671 	gi|62185319|ref|YP_220104.1| putative serine-rich protein [Chlamydophila abortus S26/3]: S-rich region from 7 to 284 corrected with score 114
>CABO-S26-01-000671 	gi|62185319|ref|YP_220104.1| putative serine-rich protein [Chlamydophila abortus S26/3]: Q-rich region from 220 to 270 corrected with score 81
>CABO-S26-01-000673 	gi|62185321|ref|YP_220106.1| hypothetical protein CAB708 [Chlamydophila abortus S26/3]: S-rich region from 23 to 121 corrected with score 43
>CABO-S26-01-000674 	gi|62185322|ref|YP_220107.1| putative serine-rich protein [Chlamydophila abortus S26/3]: S-rich region from 2 to 223 corrected with score 128
>CABO-S26-01-000674 	gi|62185322|ref|YP_220107.1| putative serine-rich protein [Chlamydophila abortus S26/3]: Q-rich region from 232 to 279 corrected with score 72
>CABO-S26-01-000686 	gi|62185334|ref|YP_220119.1| hypothetical protein CAB721 [Chlamydophila abortus S26/3]: E-rich region from 259 to 416 corrected with score 46
>CABO-S26-01-000688 	gi|62185336|ref|YP_220121.1| hypothetical protein CAB723 [Chlamydophila abortus S26/3]: Q-rich region from 49 to 125 corrected with score 47
>CABO-S26-01-000690 	gi|62185338|ref|YP_220123.1| hypothetical protein CAB725 [Chlamydophila abortus S26/3]: Q-rich region from 87 to 138 corrected with score 51
>CABO-S26-01-000700 	gi|62185348|ref|YP_220133.1| hypothetical protein CAB735 [Chlamydophila abortus S26/3]: E-rich region from 126 to 173 corrected with score 54
>CABO-S26-01-000703 	gi|62185351|ref|YP_220136.1| 50S ribosomal protein L35 [Chlamydophila abortus S26/3]: K-rich region from 3 to 47 corrected with score 43
>CABO-S26-01-000718 	gi|62185366|ref|YP_220151.1| hypothetical protein CAB754 [Chlamydophila abortus S26/3]: I-rich region from 141 to 186 corrected with score 46
>CABO-S26-01-000724 	gi|62185372|ref|YP_220157.1| TMH family membrane protein [Chlamydophila abortus S26/3]: I-rich region from 31 to 78 corrected with score 40
>CABO-S26-01-000725 	gi|62185373|ref|YP_220158.1| TMH family membrane protein [Chlamydophila abortus S26/3]: Q-rich region from 104 to 242 corrected with score 55
>CABO-S26-01-000725 	gi|62185373|ref|YP_220158.1| TMH family membrane protein [Chlamydophila abortus S26/3]: V-rich region from 27 to 78 corrected with score 44
>CABO-S26-01-000726 	gi|62185374|ref|YP_220159.1| TMH family membrane protein [Chlamydophila abortus S26/3]: E-rich region from 101 to 457 corrected with score 46
>CABO-S26-01-000726 	gi|62185374|ref|YP_220159.1| TMH family membrane protein [Chlamydophila abortus S26/3]: V-rich region from 33 to 87 corrected with score 40
>CABO-S26-01-000727 	gi|62185375|ref|YP_220160.1| TMH family membrane protein [Chlamydophila abortus S26/3]: E-rich region from 96 to 200 corrected with score 42
>CABO-S26-01-000728 	gi|62185376|ref|YP_220161.1| TMH family membrane protein [Chlamydophila abortus S26/3]: Q-rich region from 96 to 301 corrected with score 97
>CABO-S26-01-000731 	gi|62185379|ref|YP_220164.1| hypothetical protein CAB774 [Chlamydophila abortus S26/3]: P-rich region from 107 to 155 corrected with score 46
>CABO-S26-01-000733 	gi|62185381|ref|YP_220166.1| polymorphic outer membrane protein [Chlamydophila abortus S26/3]: S-rich region from 183 to 861 corrected with score 67
>CABO-S26-01-000757 	gi|62185405|ref|YP_220190.1| hypothetical protein CAB800 [Chlamydophila abortus S26/3]: E-rich region from 116 to 153 corrected with score 47
>CABO-S26-01-000759 	gi|62185407|ref|YP_220192.1| 30S ribosomal protein S14 [Chlamydophila abortus S26/3]: K-rich region from 3 to 53 corrected with score 48
>CABO-S26-01-000777 	gi|62185425|ref|YP_220210.1| hypothetical protein CAB821 [Chlamydophila abortus S26/3]: Q-rich region from 379 to 552 corrected with score 48
>CABO-S26-01-000787 	gi|62185435|ref|YP_220220.1| hypothetical protein CAB832 [Chlamydophila abortus S26/3]: P-rich region from 94 to 116 corrected with score 62
>CABO-S26-01-000803 	gi|62185451|ref|YP_220236.1| putative histone-like protein [Chlamydophila abortus S26/3]: K-rich region from 4 to 123 corrected with score 112
>CABO-S26-01-000803 	gi|62185451|ref|YP_220236.1| putative histone-like protein [Chlamydophila abortus S26/3]: A-rich region from 67 to 120 corrected with score 48
>CABO-S26-01-000814 	gi|62185462|ref|YP_220247.1| putative lipoprotein [Chlamydophila abortus S26/3]: K-rich region from 29 to 91 corrected with score 42
>CABO-S26-01-000840 	gi|62185488|ref|YP_220273.1| putative helicase [Chlamydophila abortus S26/3]: E-rich region from 103 to 144 corrected with score 43
>CABO-S26-01-000845 	gi|62185493|ref|YP_220278.1| GTP-binding protein EngA [Chlamydophila abortus S26/3]: E-rich region from 166 to 199 corrected with score 49
>CABO-S26-01-000856 	gi|62185504|ref|YP_220289.1| putative type III export protein [Chlamydophila abortus S26/3]: E-rich region from 287 to 328 corrected with score 51
>CABO-S26-01-000859 	gi|62185507|ref|YP_220292.1| type III secretion system protein [Chlamydophila abortus S26/3]: L-rich region from 92 to 120 corrected with score 43
>CABO-S26-01-000859 	gi|62185507|ref|YP_220292.1| type III secretion system protein [Chlamydophila abortus S26/3]: M-rich region from 248 to 302 corrected with score 42
>CABO-S26-01-000861 	gi|62185509|ref|YP_220294.1| putative type III export protein [Chlamydophila abortus S26/3]: M-rich region from 165 to 257 corrected with score 47
>CABO-S26-01-000862 	gi|62185510|ref|YP_220295.1| putative inner membrane protein [Chlamydophila abortus S26/3]: L-rich region from 105 to 134 corrected with score 42
>CABO-S26-01-000863 	gi|62185511|ref|YP_220296.1| hypothetical protein CAB911 [Chlamydophila abortus S26/3]: K-rich region from 55 to 94 corrected with score 41
>CABO-S26-01-000873 	gi|62185521|ref|YP_220306.1| putative regulatory protein [Chlamydophila abortus S26/3]: K-rich region from 178 to 227 corrected with score 48
>CABO-S26-01-000874 	gi|62185522|ref|YP_220307.1| hypothetical protein CAB922 [Chlamydophila abortus S26/3]: T-rich region from 8 to 34 corrected with score 41
>CABO-S26-01-000875 	gi|62185523|ref|YP_220308.1| putative inner membrane protein [Chlamydophila abortus S26/3]: A-rich region from 60 to 361 corrected with score 145
>CABO-S26-01-000876 	gi|62185524|ref|YP_220309.1| putative inner membrane protein [Chlamydophila abortus S26/3]: A-rich region from 10 to 389 corrected with score 178
>CABO-S26-01-000876 	gi|62185524|ref|YP_220309.1| putative inner membrane protein [Chlamydophila abortus S26/3]: S-rich region from 2 to 95 corrected with score 67
>CABO-S26-01-000876 	gi|62185524|ref|YP_220309.1| putative inner membrane protein [Chlamydophila abortus S26/3]: Q-rich region from 376 to 433 corrected with score 56
>CABO-S26-01-000895 	gi|62185543|ref|YP_220328.1| putative exported TonB protein [Chlamydophila abortus S26/3]: K-rich region from 64 to 129 corrected with score 52
>CABO-S26-01-000909 	gi|62185557|ref|YP_220342.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila abortus S26/3]: K-rich region from 743 to 783 corrected with score 60
>CABO-S26-01-000909 	gi|62185557|ref|YP_220342.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila abortus S26/3]: T-rich region from 729 to 781 corrected with score 50
>CABO-S26-01-000922 	gi|62185570|ref|YP_220355.1| putative inner membrane protein [Chlamydophila abortus S26/3]: Q-rich region from 92 to 200 corrected with score 55
>CABO-S26-01-000923 	gi|62185571|ref|YP_220356.1| 30S ribosomal protein S20 [Chlamydophila abortus S26/3]: K-rich region from 4 to 45 corrected with score 43
>CABO-S26-01-000931 	gi|62185579|ref|YP_220364.1| hypothetical protein CAB981 [Chlamydophila abortus S26/3]: H-rich region from 274 to 279 corrected with score 40
>CCAV-GPI-01-000002 	gi|29839772|ref|NP_828878.1| hypothetical protein CCA00003 [Chlamydophila caviae GPIC]: K-rich region from 101 to 140 corrected with score 42
>CCAV-GPI-01-000014 	gi|29839784|ref|NP_828890.1| hypothetical protein CCA00015 [Chlamydophila caviae GPIC]: S-rich region from 9 to 532 corrected with score 120
>CCAV-GPI-01-000015 	gi|29839785|ref|NP_828891.1| hypothetical protein CCA00016 [Chlamydophila caviae GPIC]: Q-rich region from 816 to 845 corrected with score 45
>CCAV-GPI-01-000028 	gi|29839798|ref|NP_828904.1| FHA domain-containing protein [Chlamydophila caviae GPIC]: E-rich region from 123 to 340 corrected with score 195
>CCAV-GPI-01-000028 	gi|29839798|ref|NP_828904.1| FHA domain-containing protein [Chlamydophila caviae GPIC]: K-rich region from 127 to 198 corrected with score 56
>CCAV-GPI-01-000028 	gi|29839798|ref|NP_828904.1| FHA domain-containing protein [Chlamydophila caviae GPIC]: S-rich region from 113 to 159 corrected with score 41
>CCAV-GPI-01-000034 	gi|29839804|ref|NP_828910.1| hypothetical protein CCA00036 [Chlamydophila caviae GPIC]: E-rich region from 13 to 170 corrected with score 95
>CCAV-GPI-01-000035 	gi|29839805|ref|NP_828911.1| hypothetical protein CCA00037 [Chlamydophila caviae GPIC]: Q-rich region from 251 to 281 corrected with score 65
>CCAV-GPI-01-000035 	gi|29839805|ref|NP_828911.1| hypothetical protein CCA00037 [Chlamydophila caviae GPIC]: E-rich region from 14 to 88 corrected with score 62
>CCAV-GPI-01-000038 	gi|29839808|ref|NP_828914.1| type III secretion protein SctC [Chlamydophila caviae GPIC]: K-rich region from 40 to 214 corrected with score 62
>CCAV-GPI-01-000041 	gi|29839811|ref|NP_828917.1| ribosome recycling factor [Chlamydophila caviae GPIC]: K-rich region from 113 to 176 corrected with score 40
>CCAV-GPI-01-000060 	gi|29839830|ref|NP_828936.1| hypothetical protein CCA00062 [Chlamydophila caviae GPIC]: S-rich region from 4 to 240 corrected with score 163
>CCAV-GPI-01-000060 	gi|29839830|ref|NP_828936.1| hypothetical protein CCA00062 [Chlamydophila caviae GPIC]: P-rich region from 159 to 196 corrected with score 47
>CCAV-GPI-01-000072 	gi|29839842|ref|NP_828948.1| sugar phosphate sensor protein UhpC [Chlamydophila caviae GPIC]: W-rich region from 127 to 139 corrected with score 40
>CCAV-GPI-01-000072 	gi|29839842|ref|NP_828948.1| sugar phosphate sensor protein UhpC [Chlamydophila caviae GPIC]: Y-rich region from 27 to 47 corrected with score 40
>CCAV-GPI-01-000115 	gi|29839885|ref|NP_828991.1| hypothetical protein CCA00117 [Chlamydophila caviae GPIC]: E-rich region from 108 to 195 corrected with score 65
>CCAV-GPI-01-000115 	gi|29839885|ref|NP_828991.1| hypothetical protein CCA00117 [Chlamydophila caviae GPIC]: K-rich region from 137 to 161 corrected with score 55
>CCAV-GPI-01-000115 	gi|29839885|ref|NP_828991.1| hypothetical protein CCA00117 [Chlamydophila caviae GPIC]: S-rich region from 109 to 136 corrected with score 53
>CCAV-GPI-01-000116 	gi|29839886|ref|NP_828992.1| hypothetical protein CCA00118 [Chlamydophila caviae GPIC]: E-rich region from 98 to 274 corrected with score 71
>CCAV-GPI-01-000124 	gi|29839894|ref|NP_829000.1| ADP, ATP carrier protein [Chlamydophila caviae GPIC]: I-rich region from 471 to 503 corrected with score 44
>CCAV-GPI-01-000154 	gi|29839924|ref|NP_829030.1| hypothetical protein CCA00156 [Chlamydophila caviae GPIC]: Q-rich region from 631 to 745 corrected with score 57
>CCAV-GPI-01-000167 	gi|29839937|ref|NP_829043.1| hypothetical protein CCA00170 [Chlamydophila caviae GPIC]: T-rich region from 2 to 150 corrected with score 159
>CCAV-GPI-01-000167 	gi|29839937|ref|NP_829043.1| hypothetical protein CCA00170 [Chlamydophila caviae GPIC]: S-rich region from 634 to 880 corrected with score 94
>CCAV-GPI-01-000167 	gi|29839937|ref|NP_829043.1| hypothetical protein CCA00170 [Chlamydophila caviae GPIC]: T-rich region from 396 to 459 corrected with score 62
>CCAV-GPI-01-000167 	gi|29839937|ref|NP_829043.1| hypothetical protein CCA00170 [Chlamydophila caviae GPIC]: P-rich region from 474 to 484 corrected with score 50
>CCAV-GPI-01-000167 	gi|29839937|ref|NP_829043.1| hypothetical protein CCA00170 [Chlamydophila caviae GPIC]: T-rich region from 763 to 799 corrected with score 47
>CCAV-GPI-01-000167 	gi|29839937|ref|NP_829043.1| hypothetical protein CCA00170 [Chlamydophila caviae GPIC]: S-rich region from 52 to 162 corrected with score 40
>CCAV-GPI-01-000196 	gi|29839966|ref|NP_829072.1| GTPase ObgE [Chlamydophila caviae GPIC]: G-rich region from 31 to 43 corrected with score 40
>CCAV-GPI-01-000197 	gi|29839967|ref|NP_829073.1| metal ABC transporter, permease protein [Chlamydophila caviae GPIC]: I-rich region from 184 to 271 corrected with score 58
>CCAV-GPI-01-000202 	gi|29839972|ref|NP_829078.1| polymorphic outer membrane protein B/C family protein/autotransporter, putative [Chlamydophila caviae GPIC]: S-rich region from 21 to 1341 corrected with score 253
>CCAV-GPI-01-000204 	gi|29839974|ref|NP_829080.1| hypothetical protein CCA00207 [Chlamydophila caviae GPIC]: K-rich region from 38 to 99 corrected with score 40
>CCAV-GPI-01-000215 	gi|29839985|ref|NP_829091.1| branched-chain alpha-keto acid dehydrogenase subunit E2 [Chlamydophila caviae GPIC]: S-rich region from 61 to 190 corrected with score 41
>CCAV-GPI-01-000217 	gi|29839987|ref|NP_829093.1| hypothetical protein CCA00220 [Chlamydophila caviae GPIC]: E-rich region from 25 to 174 corrected with score 58
>CCAV-GPI-01-000218 	gi|29839988|ref|NP_829094.1| hypothetical protein CCA00221 [Chlamydophila caviae GPIC]: A-rich region from 42 to 84 corrected with score 41
>CCAV-GPI-01-000224 	gi|29839994|ref|NP_829100.1| hypothetical protein CCA00227 [Chlamydophila caviae GPIC]: D-rich region from 304 to 312 corrected with score 43
>CCAV-GPI-01-000237 	gi|29840007|ref|NP_829113.1| VacB/Rnb family exoribonuclease [Chlamydophila caviae GPIC]: K-rich region from 653 to 678 corrected with score 50
>CCAV-GPI-01-000238 	gi|29840008|ref|NP_829114.1| molecular chaperone DnaK [Chlamydophila caviae GPIC]: E-rich region from 493 to 589 corrected with score 63
>CCAV-GPI-01-000238 	gi|29840008|ref|NP_829114.1| molecular chaperone DnaK [Chlamydophila caviae GPIC]: S-rich region from 584 to 650 corrected with score 53
>CCAV-GPI-01-000242 	gi|29840012|ref|NP_829118.1| hypothetical protein CCA00245 [Chlamydophila caviae GPIC]: E-rich region from 369 to 404 corrected with score 45
>CCAV-GPI-01-000247 	gi|29840017|ref|NP_829123.1| hypothetical protein CCA00250 [Chlamydophila caviae GPIC]: K-rich region from 19 to 141 corrected with score 53
>CCAV-GPI-01-000258 	gi|29840028|ref|NP_829134.1| hypothetical protein CCA00261 [Chlamydophila caviae GPIC]: P-rich region from 68 to 171 corrected with score 149
>CCAV-GPI-01-000262 	gi|29840032|ref|NP_829138.1| GTP-binding protein HflX, putative [Chlamydophila caviae GPIC]: K-rich region from 183 to 225 corrected with score 40
>CCAV-GPI-01-000267 	gi|29840037|ref|NP_829143.1| hypothetical protein CCA00270 [Chlamydophila caviae GPIC]: S-rich region from 20 to 198 corrected with score 50
>CCAV-GPI-01-000267 	gi|29840037|ref|NP_829143.1| hypothetical protein CCA00270 [Chlamydophila caviae GPIC]: P-rich region from 739 to 753 corrected with score 43
>CCAV-GPI-01-000270 	gi|29840040|ref|NP_829146.1| polymorphic outer membrane protein E/F family protein/autotransporter, putative [Chlamydophila caviae GPIC]: N-rich region from 218 to 319 corrected with score 48
>CCAV-GPI-01-000271 	gi|29840041|ref|NP_829147.1| polymorphic outer membrane protein E/F family protein/autotransporter, putative [Chlamydophila caviae GPIC]: S-rich region from 104 to 376 corrected with score 77
>CCAV-GPI-01-000272 	gi|29840042|ref|NP_829148.1| polymorphic outer membrane protein E/F family protein, putative [Chlamydophila caviae GPIC]: T-rich region from 6 to 62 corrected with score 40
>CCAV-GPI-01-000274 	gi|29840044|ref|NP_829150.1| polymorphic outer membrane protein H family protein [Chlamydophila caviae GPIC]: T-rich region from 130 to 600 corrected with score 87
>CCAV-GPI-01-000275 	gi|29840045|ref|NP_829151.1| polymorphic outer membrane protein G family protein/autotransporter [Chlamydophila caviae GPIC]: P-rich region from 322 to 335 corrected with score 57
>CCAV-GPI-01-000275 	gi|29840045|ref|NP_829151.1| polymorphic outer membrane protein G family protein/autotransporter [Chlamydophila caviae GPIC]: S-rich region from 47 to 307 corrected with score 54
>CCAV-GPI-01-000275 	gi|29840045|ref|NP_829151.1| polymorphic outer membrane protein G family protein/autotransporter [Chlamydophila caviae GPIC]: T-rich region from 449 to 649 corrected with score 50
>CCAV-GPI-01-000275 	gi|29840045|ref|NP_829151.1| polymorphic outer membrane protein G family protein/autotransporter [Chlamydophila caviae GPIC]: G-rich region from 555 to 564 corrected with score 48
>CCAV-GPI-01-000276 	gi|29840046|ref|NP_829152.1| polymorphic outer membrane protein G family protein [Chlamydophila caviae GPIC]: S-rich region from 32 to 376 corrected with score 52
>CCAV-GPI-01-000276 	gi|29840046|ref|NP_829152.1| polymorphic outer membrane protein G family protein [Chlamydophila caviae GPIC]: C-rich region from 11 to 19 corrected with score 42
>CCAV-GPI-01-000277 	gi|29840047|ref|NP_829153.1| polymorphic outer membrane protein G family protein/autotransporter, putative [Chlamydophila caviae GPIC]: S-rich region from 12 to 380 corrected with score 86
>CCAV-GPI-01-000278 	gi|29840048|ref|NP_829154.1| polymorphic outer membrane protein G family protein/autotransporter, putative [Chlamydophila caviae GPIC]: S-rich region from 12 to 248 corrected with score 69
>CCAV-GPI-01-000279 	gi|29840049|ref|NP_829155.1| polymorphic outer membrane protein G family protein/autotransporter, putative [Chlamydophila caviae GPIC]: S-rich region from 11 to 519 corrected with score 131
>CCAV-GPI-01-000280 	gi|29840050|ref|NP_829156.1| polymorphic outer membrane protein G family protein/autotransporter [Chlamydophila caviae GPIC]: S-rich region from 11 to 448 corrected with score 108
>CCAV-GPI-01-000280 	gi|29840050|ref|NP_829156.1| polymorphic outer membrane protein G family protein/autotransporter [Chlamydophila caviae GPIC]: T-rich region from 39 to 86 corrected with score 43
>CCAV-GPI-01-000281 	gi|29840051|ref|NP_829157.1| polymorphic outer membrane protein G family protein/autotransporter [Chlamydophila caviae GPIC]: S-rich region from 11 to 267 corrected with score 75
>CCAV-GPI-01-000285 	gi|29840055|ref|NP_829161.1| hypothetical protein CCA00290 [Chlamydophila caviae GPIC]: Q-rich region from 181 to 265 corrected with score 45
>CCAV-GPI-01-000285 	gi|29840055|ref|NP_829161.1| hypothetical protein CCA00290 [Chlamydophila caviae GPIC]: E-rich region from 336 to 381 corrected with score 45
>CCAV-GPI-01-000292 	gi|29840062|ref|NP_829168.1| hypothetical protein CCA00297 [Chlamydophila caviae GPIC]: C-rich region from 73 to 99 corrected with score 47
>CCAV-GPI-01-000293 	gi|29840063|ref|NP_829169.1| hypothetical protein CCA00298 [Chlamydophila caviae GPIC]: C-rich region from 94 to 124 corrected with score 51
>CCAV-GPI-01-000313 	gi|29840083|ref|NP_829189.1| hypothetical protein CCA00318 [Chlamydophila caviae GPIC]: K-rich region from 123 to 168 corrected with score 56
>CCAV-GPI-01-000313 	gi|29840083|ref|NP_829189.1| hypothetical protein CCA00318 [Chlamydophila caviae GPIC]: S-rich region from 152 to 201 corrected with score 45
>CCAV-GPI-01-000317 	gi|29840087|ref|NP_829193.1| 30S ribosomal protein S21 [Chlamydophila caviae GPIC]: K-rich region from 20 to 58 corrected with score 40
>CCAV-GPI-01-000318 	gi|29840088|ref|NP_829194.1| dnaJ protein [Chlamydophila caviae GPIC]: G-rich region from 67 to 134 corrected with score 70
>CCAV-GPI-01-000328 	gi|29840098|ref|NP_829204.1| hypothetical protein CCA00334 [Chlamydophila caviae GPIC]: L-rich region from 94 to 132 corrected with score 44
>CCAV-GPI-01-000344 	gi|29840114|ref|NP_829220.1| hypothetical protein CCA00350 [Chlamydophila caviae GPIC]: K-rich region from 48 to 331 corrected with score 85
>CCAV-GPI-01-000344 	gi|29840114|ref|NP_829220.1| hypothetical protein CCA00350 [Chlamydophila caviae GPIC]: S-rich region from 286 to 380 corrected with score 58
>CCAV-GPI-01-000349 	gi|29840119|ref|NP_829225.1| ATP-dependent Clp protease, ATP-binding subunit [Chlamydophila caviae GPIC]: S-rich region from 153 to 185 corrected with score 54
>CCAV-GPI-01-000349 	gi|29840119|ref|NP_829225.1| ATP-dependent Clp protease, ATP-binding subunit [Chlamydophila caviae GPIC]: E-rich region from 431 to 497 corrected with score 51
>CCAV-GPI-01-000364 	gi|29840134|ref|NP_829240.1| hypothetical protein CCA00371 [Chlamydophila caviae GPIC]: E-rich region from 126 to 150 corrected with score 54
>CCAV-GPI-01-000382 	gi|29840152|ref|NP_829258.1| hypothetical protein CCA00389 [Chlamydophila caviae GPIC]: S-rich region from 6 to 106 corrected with score 65
>CCAV-GPI-01-000383 	gi|29840153|ref|NP_829259.1| hypothetical protein CCA00390 [Chlamydophila caviae GPIC]: A-rich region from 137 to 483 corrected with score 53
>CCAV-GPI-01-000383 	gi|29840153|ref|NP_829259.1| hypothetical protein CCA00390 [Chlamydophila caviae GPIC]: C-rich region from 505 to 534 corrected with score 48
>CCAV-GPI-01-000389 	gi|29840159|ref|NP_829265.1| hypothetical protein CCA00397 [Chlamydophila caviae GPIC]: V-rich region from 35 to 84 corrected with score 53
>CCAV-GPI-01-000400 	gi|29840170|ref|NP_829276.1| glycosyl hydrolase family protein [Chlamydophila caviae GPIC]: N-rich region from 449 to 480 corrected with score 50
>CCAV-GPI-01-000404 	gi|29840174|ref|NP_829280.1| Hc2 nucleoprotein [Chlamydophila caviae GPIC]: K-rich region from 3 to 137 corrected with score 104
>CCAV-GPI-01-000404 	gi|29840174|ref|NP_829280.1| Hc2 nucleoprotein [Chlamydophila caviae GPIC]: T-rich region from 9 to 92 corrected with score 61
>CCAV-GPI-01-000408 	gi|29840178|ref|NP_829284.1| hypothetical protein CCA00416 [Chlamydophila caviae GPIC]: T-rich region from 192 to 429 corrected with score 98
>CCAV-GPI-01-000409 	gi|29840179|ref|NP_829285.1| hypothetical protein CCA00417 [Chlamydophila caviae GPIC]: T-rich region from 33 to 507 corrected with score 199
>CCAV-GPI-01-000409 	gi|29840179|ref|NP_829285.1| hypothetical protein CCA00417 [Chlamydophila caviae GPIC]: P-rich region from 256 to 290 corrected with score 99
>CCAV-GPI-01-000409 	gi|29840179|ref|NP_829285.1| hypothetical protein CCA00417 [Chlamydophila caviae GPIC]: G-rich region from 385 to 413 corrected with score 92
>CCAV-GPI-01-000409 	gi|29840179|ref|NP_829285.1| hypothetical protein CCA00417 [Chlamydophila caviae GPIC]: S-rich region from 362 to 455 corrected with score 68
>CCAV-GPI-01-000411 	gi|29840181|ref|NP_829287.1| hypothetical protein CCA00419 [Chlamydophila caviae GPIC]: E-rich region from 27 to 127 corrected with score 67
>CCAV-GPI-01-000418 	gi|29840188|ref|NP_829294.1| hypothetical protein CCA00426 [Chlamydophila caviae GPIC]: V-rich region from 35 to 81 corrected with score 40
>CCAV-GPI-01-000425 	gi|29840195|ref|NP_829301.1| GTP-binding protein LepA [Chlamydophila caviae GPIC]: K-rich region from 567 to 587 corrected with score 41
>CCAV-GPI-01-000426 	gi|29840196|ref|NP_829302.1| hypothetical protein CCA00434 [Chlamydophila caviae GPIC]: L-rich region from 33 to 65 corrected with score 44
>CCAV-GPI-01-000442 	gi|29840212|ref|NP_829318.1| LtuB protein [Chlamydophila caviae GPIC]: K-rich region from 5 to 53 corrected with score 57
>CCAV-GPI-01-000443 	gi|29840213|ref|NP_829319.1| hypothetical protein CCA00451 [Chlamydophila caviae GPIC]: S-rich region from 4 to 476 corrected with score 127
>CCAV-GPI-01-000444 	gi|29840214|ref|NP_829320.1| hypothetical protein CCA00452 [Chlamydophila caviae GPIC]: E-rich region from 93 to 108 corrected with score 43
>CCAV-GPI-01-000450 	gi|29840220|ref|NP_829326.1| copN protein [Chlamydophila caviae GPIC]: S-rich region from 2 to 253 corrected with score 52
>CCAV-GPI-01-000451 	gi|29840221|ref|NP_829327.1| type III secretion inner membrane protein SctV [Chlamydophila caviae GPIC]: L-rich region from 27 to 91 corrected with score 54
>CCAV-GPI-01-000452 	gi|29840222|ref|NP_829328.1| type III secretion system protein [Chlamydophila caviae GPIC]: V-rich region from 134 to 204 corrected with score 40
>CCAV-GPI-01-000456 	gi|29840226|ref|NP_829332.1| translation initiation factor IF-2 [Chlamydophila caviae GPIC]: K-rich region from 2 to 293 corrected with score 70
>CCAV-GPI-01-000471 	gi|29840241|ref|NP_829347.1| cationic outer membrane protein OmpH, putative [Chlamydophila caviae GPIC]: E-rich region from 42 to 106 corrected with score 45
>CCAV-GPI-01-000480 	gi|29840250|ref|NP_829356.1| inclusion membrane protein C [Chlamydophila caviae GPIC]: I-rich region from 106 to 171 corrected with score 49
>CCAV-GPI-01-000484 	gi|29840254|ref|NP_829360.1| hypothetical protein CCA00494 [Chlamydophila caviae GPIC]: L-rich region from 56 to 100 corrected with score 48
>CCAV-GPI-01-000487 	gi|29840257|ref|NP_829363.1| hypothetical protein CCA00497 [Chlamydophila caviae GPIC]: I-rich region from 1 to 53 corrected with score 53
>CCAV-GPI-01-000488 	gi|29840258|ref|NP_829364.1| amino acid antiporter [Chlamydophila caviae GPIC]: W-rich region from 81 to 98 corrected with score 40
>CCAV-GPI-01-000490 	gi|29840260|ref|NP_829366.1| hypothetical protein CCA00500 [Chlamydophila caviae GPIC]: P-rich region from 152 to 206 corrected with score 60
>CCAV-GPI-01-000490 	gi|29840260|ref|NP_829366.1| hypothetical protein CCA00500 [Chlamydophila caviae GPIC]: V-rich region from 37 to 83 corrected with score 50
>CCAV-GPI-01-000503 	gi|29840273|ref|NP_829379.1| hypothetical protein CCA00513 [Chlamydophila caviae GPIC]: S-rich region from 284 to 372 corrected with score 82
>CCAV-GPI-01-000503 	gi|29840273|ref|NP_829379.1| hypothetical protein CCA00513 [Chlamydophila caviae GPIC]: Q-rich region from 115 to 225 corrected with score 68
>CCAV-GPI-01-000504 	gi|29840274|ref|NP_829380.1| hypothetical protein CCA00514 [Chlamydophila caviae GPIC]: E-rich region from 344 to 375 corrected with score 45
>CCAV-GPI-01-000512 	gi|29840282|ref|NP_829388.1| hypothetical protein CCA00523 [Chlamydophila caviae GPIC]: S-rich region from 2 to 100 corrected with score 54
>CCAV-GPI-01-000522 	gi|29840292|ref|NP_829398.1| 30S ribosomal protein S9 [Chlamydophila caviae GPIC]: K-rich region from 93 to 134 corrected with score 46
>CCAV-GPI-01-000525 	gi|29840295|ref|NP_829401.1| hypothetical protein CCA00536 [Chlamydophila caviae GPIC]: P-rich region from 351 to 365 corrected with score 41
>CCAV-GPI-01-000527 	gi|29840297|ref|NP_829403.1| hypothetical protein CCA00538 [Chlamydophila caviae GPIC]: A-rich region from 49 to 293 corrected with score 81
>CCAV-GPI-01-000537 	gi|29840307|ref|NP_829413.1| ribonuclease BN family protein [Chlamydophila caviae GPIC]: F-rich region from 235 to 287 corrected with score 40
>CCAV-GPI-01-000539 	gi|29840309|ref|NP_829415.1| inclusion membrane protein A [Chlamydophila caviae GPIC]: I-rich region from 65 to 117 corrected with score 53
>CCAV-GPI-01-000547 	gi|29840317|ref|NP_829423.1| putative cytotoxin [Chlamydophila caviae GPIC]: S-rich region from 5 to 244 corrected with score 78
>CCAV-GPI-01-000547 	gi|29840317|ref|NP_829423.1| putative cytotoxin [Chlamydophila caviae GPIC]: E-rich region from 414 to 470 corrected with score 50
>CCAV-GPI-01-000547 	gi|29840317|ref|NP_829423.1| putative cytotoxin [Chlamydophila caviae GPIC]: A-rich region from 2061 to 2115 corrected with score 40
>CCAV-GPI-01-000564 	gi|29840334|ref|NP_829440.1| hypothetical protein CCA00576 [Chlamydophila caviae GPIC]: I-rich region from 37 to 94 corrected with score 42
>CCAV-GPI-01-000579 	gi|29840349|ref|NP_829455.1| hypothetical protein CCA00591 [Chlamydophila caviae GPIC]: E-rich region from 185 to 224 corrected with score 43
>CCAV-GPI-01-000604 	gi|29840374|ref|NP_829480.1| hypothetical protein CCA00616 [Chlamydophila caviae GPIC]: V-rich region from 69 to 112 corrected with score 51
>CCAV-GPI-01-000604 	gi|29840374|ref|NP_829480.1| hypothetical protein CCA00616 [Chlamydophila caviae GPIC]: L-rich region from 825 to 863 corrected with score 45
>CCAV-GPI-01-000604 	gi|29840374|ref|NP_829480.1| hypothetical protein CCA00616 [Chlamydophila caviae GPIC]: S-rich region from 567 to 792 corrected with score 40
>CCAV-GPI-01-000606 	gi|29840376|ref|NP_829482.1| protein kinase, putative [Chlamydophila caviae GPIC]: E-rich region from 284 to 378 corrected with score 53
>CCAV-GPI-01-000608 	gi|29840378|ref|NP_829484.1| hypothetical protein CCA00620 [Chlamydophila caviae GPIC]: A-rich region from 23 to 85 corrected with score 40
>CCAV-GPI-01-000612 	gi|29840382|ref|NP_829488.1| polymorphic outer membrane protein G family protein/autotransporter [Chlamydophila caviae GPIC]: S-rich region from 11 to 423 corrected with score 90
>CCAV-GPI-01-000612 	gi|29840382|ref|NP_829488.1| polymorphic outer membrane protein G family protein/autotransporter [Chlamydophila caviae GPIC]: T-rich region from 39 to 86 corrected with score 43
>CCAV-GPI-01-000613 	gi|29840383|ref|NP_829489.1| ATP-dependent Clp protease, subunit B [Chlamydophila caviae GPIC]: E-rich region from 412 to 534 corrected with score 71
>CCAV-GPI-01-000622 	gi|29840392|ref|NP_829498.1| hypothetical protein CCA00634 [Chlamydophila caviae GPIC]: H-rich region from 364 to 405 corrected with score 40
>CCAV-GPI-01-000624 	gi|29840394|ref|NP_829500.1| hypothetical protein CCA00636 [Chlamydophila caviae GPIC]: L-rich region from 38 to 79 corrected with score 40
>CCAV-GPI-01-000627 	gi|29840397|ref|NP_829503.1| hypothetical protein CCA00639 [Chlamydophila caviae GPIC]: S-rich region from 94 to 196 corrected with score 78
>CCAV-GPI-01-000633 	gi|29840403|ref|NP_829509.1| hypothetical protein CCA00645 [Chlamydophila caviae GPIC]: I-rich region from 34 to 83 corrected with score 42
>CCAV-GPI-01-000651 	gi|29840421|ref|NP_829527.1| signal peptidase I, putative [Chlamydophila caviae GPIC]: Q-rich region from 22 to 64 corrected with score 46
>CCAV-GPI-01-000688 	gi|29840458|ref|NP_829564.1| hypothetical protein CCA00700 [Chlamydophila caviae GPIC]: S-rich region from 2 to 85 corrected with score 45
>CCAV-GPI-01-000690 	gi|29840460|ref|NP_829566.1| hypothetical protein CCA00702 [Chlamydophila caviae GPIC]: Q-rich region from 116 to 444 corrected with score 159
>CCAV-GPI-01-000690 	gi|29840460|ref|NP_829566.1| hypothetical protein CCA00702 [Chlamydophila caviae GPIC]: P-rich region from 4 to 14 corrected with score 41
>CCAV-GPI-01-000695 	gi|29840465|ref|NP_829571.1| hypothetical protein CCA00707 [Chlamydophila caviae GPIC]: S-rich region from 382 to 608 corrected with score 108
>CCAV-GPI-01-000725 	gi|29840495|ref|NP_829601.1| hypothetical protein CCA00738 [Chlamydophila caviae GPIC]: Y-rich region from 52 to 71 corrected with score 53
>CCAV-GPI-01-000726 	gi|29840496|ref|NP_829602.1| hypothetical protein CCA00739 [Chlamydophila caviae GPIC]: S-rich region from 7 to 283 corrected with score 90
>CCAV-GPI-01-000726 	gi|29840496|ref|NP_829602.1| hypothetical protein CCA00739 [Chlamydophila caviae GPIC]: Q-rich region from 181 to 263 corrected with score 72
>CCAV-GPI-01-000728 	gi|29840498|ref|NP_829604.1| hypothetical protein CCA00741 [Chlamydophila caviae GPIC]: K-rich region from 94 to 240 corrected with score 53
>CCAV-GPI-01-000729 	gi|29840499|ref|NP_829605.1| hypothetical protein CCA00742 [Chlamydophila caviae GPIC]: S-rich region from 2 to 291 corrected with score 108
>CCAV-GPI-01-000729 	gi|29840499|ref|NP_829605.1| hypothetical protein CCA00742 [Chlamydophila caviae GPIC]: Q-rich region from 232 to 272 corrected with score 51
>CCAV-GPI-01-000740 	gi|29840510|ref|NP_829616.1| hypothetical protein CCA00753 [Chlamydophila caviae GPIC]: E-rich region from 130 to 417 corrected with score 49
>CCAV-GPI-01-000742 	gi|29840512|ref|NP_829618.1| hypothetical protein CCA00755 [Chlamydophila caviae GPIC]: Q-rich region from 49 to 125 corrected with score 46
>CCAV-GPI-01-000744 	gi|29840514|ref|NP_829620.1| hypothetical protein CCA00757 [Chlamydophila caviae GPIC]: Q-rich region from 87 to 138 corrected with score 45
>CCAV-GPI-01-000754 	gi|29840524|ref|NP_829630.1| hypothetical protein CCA00767 [Chlamydophila caviae GPIC]: E-rich region from 92 to 172 corrected with score 49
>CCAV-GPI-01-000757 	gi|29840527|ref|NP_829633.1| 50S ribosomal protein L35 [Chlamydophila caviae GPIC]: K-rich region from 3 to 47 corrected with score 43
>CCAV-GPI-01-000773 	gi|29840543|ref|NP_829649.1| hypothetical protein CCA00786 [Chlamydophila caviae GPIC]: L-rich region from 135 to 186 corrected with score 47
>CCAV-GPI-01-000780 	gi|29840550|ref|NP_829656.1| hypothetical protein CCA00793 [Chlamydophila caviae GPIC]: Q-rich region from 116 to 240 corrected with score 44
>CCAV-GPI-01-000782 	gi|29840552|ref|NP_829658.1| hypothetical protein CCA00795 [Chlamydophila caviae GPIC]: E-rich region from 90 to 241 corrected with score 62
>CCAV-GPI-01-000784 	gi|29840554|ref|NP_829660.1| hypothetical protein CCA00797 [Chlamydophila caviae GPIC]: E-rich region from 103 to 259 corrected with score 65
>CCAV-GPI-01-000786 	gi|29840556|ref|NP_829662.1| hypothetical protein CCA00799 [Chlamydophila caviae GPIC]: Q-rich region from 96 to 668 corrected with score 124
>CCAV-GPI-01-000787 	gi|29840557|ref|NP_829663.1| hypothetical protein CCA00800 [Chlamydophila caviae GPIC]: Q-rich region from 104 to 277 corrected with score 82
>CCAV-GPI-01-000788 	gi|29840558|ref|NP_829664.1| hypothetical protein CCA00801 [Chlamydophila caviae GPIC]: V-rich region from 27 to 76 corrected with score 40
>CCAV-GPI-01-000790 	gi|29840560|ref|NP_829666.1| hypothetical protein CCA00803 [Chlamydophila caviae GPIC]: L-rich region from 65 to 96 corrected with score 40
>CCAV-GPI-01-000792 	gi|29840562|ref|NP_829668.1| hypothetical protein CCA00805 [Chlamydophila caviae GPIC]: L-rich region from 62 to 90 corrected with score 53
>CCAV-GPI-01-000793 	gi|29840563|ref|NP_829669.1| polymorphic outer membrane protein D family protein/autotransporter [Chlamydophila caviae GPIC]: S-rich region from 42 to 754 corrected with score 89
>CCAV-GPI-01-000818 	gi|29840588|ref|NP_829694.1| hypothetical protein CCA00831 [Chlamydophila caviae GPIC]: E-rich region from 125 to 160 corrected with score 44
>CCAV-GPI-01-000831 	gi|29840601|ref|NP_829707.1| hypothetical protein CCA00844 [Chlamydophila caviae GPIC]: P-rich region from 43 to 101 corrected with score 51
>CCAV-GPI-01-000849 	gi|29840619|ref|NP_829725.1| KH domain-containing protein [Chlamydophila caviae GPIC]: S-rich region from 80 to 142 corrected with score 49
>CCAV-GPI-01-000853 	gi|29840623|ref|NP_829729.1| LysM domain-containing protein [Chlamydophila caviae GPIC]: P-rich region from 88 to 116 corrected with score 43
>CCAV-GPI-01-000869 	gi|29840639|ref|NP_829745.1| histone H1-like protein HC1 [Chlamydophila caviae GPIC]: K-rich region from 4 to 125 corrected with score 116
>CCAV-GPI-01-000869 	gi|29840639|ref|NP_829745.1| histone H1-like protein HC1 [Chlamydophila caviae GPIC]: A-rich region from 67 to 115 corrected with score 49
>CCAV-GPI-01-000878 	gi|29840648|ref|NP_829754.1| hypothetical protein CCA00892 [Chlamydophila caviae GPIC]: S-rich region from 18 to 118 corrected with score 52
>CCAV-GPI-01-000903 	gi|29840673|ref|NP_829779.1| SNF2 family helicase [Chlamydophila caviae GPIC]: E-rich region from 103 to 144 corrected with score 48
>CCAV-GPI-01-000908 	gi|29840678|ref|NP_829784.1| GTP-binding protein EngA [Chlamydophila caviae GPIC]: E-rich region from 166 to 199 corrected with score 51
>CCAV-GPI-01-000920 	gi|29840690|ref|NP_829796.1| type III secretion protein SctJ [Chlamydophila caviae GPIC]: E-rich region from 287 to 329 corrected with score 65
>CCAV-GPI-01-000923 	gi|29840693|ref|NP_829799.1| type III secretion system protein [Chlamydophila caviae GPIC]: L-rich region from 90 to 118 corrected with score 43
>CCAV-GPI-01-000923 	gi|29840693|ref|NP_829799.1| type III secretion system protein [Chlamydophila caviae GPIC]: M-rich region from 246 to 300 corrected with score 42
>CCAV-GPI-01-000925 	gi|29840695|ref|NP_829801.1| type III secretion inner membrane protein SctT [Chlamydophila caviae GPIC]: M-rich region from 165 to 257 corrected with score 47
>CCAV-GPI-01-000926 	gi|29840696|ref|NP_829802.1| hypothetical protein CCA00941 [Chlamydophila caviae GPIC]: L-rich region from 105 to 134 corrected with score 47
>CCAV-GPI-01-000927 	gi|29840697|ref|NP_829803.1| hypothetical protein CCA00942 [Chlamydophila caviae GPIC]: K-rich region from 55 to 94 corrected with score 44
>CCAV-GPI-01-000937 	gi|29840707|ref|NP_829813.1| type III secretion chaperone SycD [Chlamydophila caviae GPIC]: K-rich region from 178 to 227 corrected with score 50
>CCAV-GPI-01-000939 	gi|29840709|ref|NP_829815.1| hypothetical protein CCA00954 [Chlamydophila caviae GPIC]: A-rich region from 51 to 361 corrected with score 141
>CCAV-GPI-01-000940 	gi|29840710|ref|NP_829816.1| hypothetical protein CCA00955 [Chlamydophila caviae GPIC]: S-rich region from 2 to 438 corrected with score 166
>CCAV-GPI-01-000940 	gi|29840710|ref|NP_829816.1| hypothetical protein CCA00955 [Chlamydophila caviae GPIC]: A-rich region from 169 to 303 corrected with score 114
>CCAV-GPI-01-000940 	gi|29840710|ref|NP_829816.1| hypothetical protein CCA00955 [Chlamydophila caviae GPIC]: Q-rich region from 375 to 431 corrected with score 48
>CCAV-GPI-01-000959 	gi|29840729|ref|NP_829835.1| hypothetical protein CCA00974 [Chlamydophila caviae GPIC]: K-rich region from 63 to 130 corrected with score 65
>CCAV-GPI-01-000973 	gi|29840743|ref|NP_829849.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila caviae GPIC]: K-rich region from 743 to 782 corrected with score 61
>CCAV-GPI-01-000973 	gi|29840743|ref|NP_829849.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila caviae GPIC]: T-rich region from 729 to 790 corrected with score 46
>CCAV-GPI-01-000987 	gi|29840757|ref|NP_829863.1| hypothetical protein CCA01002 [Chlamydophila caviae GPIC]: Q-rich region from 61 to 245 corrected with score 68
>CCAV-GPI-01-000988 	gi|29840758|ref|NP_829864.1| 30S ribosomal protein S20 [Chlamydophila caviae GPIC]: K-rich region from 4 to 45 corrected with score 40
>CCAV-GPI-01-000996 	gi|29840766|ref|NP_829872.1| hypothetical protein CCA01011 [Chlamydophila caviae GPIC]: H-rich region from 274 to 279 corrected with score 40
>CFEL-FEC-01-000000 	gi|89897808|ref|YP_514918.1| hypothetical protein CF0001 [Chlamydophila felis Fe/C-56]: H-rich region from 274 to 279 corrected with score 40
>CFEL-FEC-01-000007 	gi|89897815|ref|YP_514925.1| hypothetical protein CF0008 [Chlamydophila felis Fe/C-56]: S-rich region from 2 to 216 corrected with score 45
>CFEL-FEC-01-000008 	gi|89897816|ref|YP_514926.1| 30S ribosomal protein S20 [Chlamydophila felis Fe/C-56]: K-rich region from 4 to 45 corrected with score 46
>CFEL-FEC-01-000010 	gi|89897818|ref|YP_514928.1| hypothetical protein CF0010 [Chlamydophila felis Fe/C-56]: Q-rich region from 92 to 245 corrected with score 73
>CFEL-FEC-01-000024 	gi|89897832|ref|YP_514942.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila felis Fe/C-56]: K-rich region from 742 to 783 corrected with score 64
>CFEL-FEC-01-000024 	gi|89897832|ref|YP_514942.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila felis Fe/C-56]: T-rich region from 729 to 781 corrected with score 56
>CFEL-FEC-01-000038 	gi|89897846|ref|YP_514956.1| energy transducer [Chlamydophila felis Fe/C-56]: K-rich region from 66 to 128 corrected with score 59
>CFEL-FEC-01-000047 	gi|89897855|ref|YP_514965.1| hypothetical protein CF0048 [Chlamydophila felis Fe/C-56]: I-rich region from 35 to 76 corrected with score 45
>CFEL-FEC-01-000058 	gi|89897866|ref|YP_514976.1| wall surface anchor family protein [Chlamydophila felis Fe/C-56]: S-rich region from 2 to 439 corrected with score 174
>CFEL-FEC-01-000058 	gi|89897866|ref|YP_514976.1| wall surface anchor family protein [Chlamydophila felis Fe/C-56]: A-rich region from 170 to 304 corrected with score 112
>CFEL-FEC-01-000058 	gi|89897866|ref|YP_514976.1| wall surface anchor family protein [Chlamydophila felis Fe/C-56]: Q-rich region from 376 to 432 corrected with score 51
>CFEL-FEC-01-000059 	gi|89897867|ref|YP_514977.1| wall surface anchor family protein [Chlamydophila felis Fe/C-56]: A-rich region from 51 to 493 corrected with score 113
>CFEL-FEC-01-000061 	gi|89897869|ref|YP_514979.1| type III secretion chaperone low calcium response protein H [Chlamydophila felis Fe/C-56]: K-rich region from 179 to 227 corrected with score 45
>CFEL-FEC-01-000071 	gi|89897879|ref|YP_514989.1| hypothetical protein CF0072 [Chlamydophila felis Fe/C-56]: K-rich region from 55 to 94 corrected with score 51
>CFEL-FEC-01-000072 	gi|89897880|ref|YP_514990.1| hypothetical protein CF0073 [Chlamydophila felis Fe/C-56]: L-rich region from 105 to 134 corrected with score 45
>CFEL-FEC-01-000073 	gi|89897881|ref|YP_514991.1| type III secretion flagellar biosynthesis inner membrane protein [Chlamydophila felis Fe/C-56]: M-rich region from 165 to 257 corrected with score 40
>CFEL-FEC-01-000075 	gi|89897883|ref|YP_514993.1| type III secretion system protein [Chlamydophila felis Fe/C-56]: L-rich region from 92 to 120 corrected with score 43
>CFEL-FEC-01-000075 	gi|89897883|ref|YP_514993.1| type III secretion system protein [Chlamydophila felis Fe/C-56]: M-rich region from 248 to 302 corrected with score 42
>CFEL-FEC-01-000076 	gi|89897884|ref|YP_514994.1| type III secretion system protein [Chlamydophila felis Fe/C-56]: E-rich region from 30 to 71 corrected with score 53
>CFEL-FEC-01-000078 	gi|89897886|ref|YP_514996.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila felis Fe/C-56]: E-rich region from 287 to 329 corrected with score 60
>CFEL-FEC-01-000090 	gi|89897898|ref|YP_515008.1| GTP-binding protein EngA [Chlamydophila felis Fe/C-56]: E-rich region from 166 to 200 corrected with score 53
>CFEL-FEC-01-000095 	gi|89897903|ref|YP_515013.1| SWF/SNF family helicase [Chlamydophila felis Fe/C-56]: E-rich region from 103 to 144 corrected with score 51
>CFEL-FEC-01-000113 	gi|89897921|ref|YP_515031.1| cell division related rod shape-determining membrane protein [Chlamydophila felis Fe/C-56]: I-rich region from 14 to 29 corrected with score 40
>CFEL-FEC-01-000121 	gi|89897929|ref|YP_515039.1| hypothetical protein CF0122 [Chlamydophila felis Fe/C-56]: S-rich region from 18 to 118 corrected with score 48
>CFEL-FEC-01-000132 	gi|89897940|ref|YP_515050.1| histone H1-like protein Hc1 [Chlamydophila felis Fe/C-56]: K-rich region from 4 to 126 corrected with score 122
>CFEL-FEC-01-000132 	gi|89897940|ref|YP_515050.1| histone H1-like protein Hc1 [Chlamydophila felis Fe/C-56]: A-rich region from 67 to 115 corrected with score 49
>CFEL-FEC-01-000159 	gi|89897967|ref|YP_515077.1| myosin heavy chain [Chlamydophila felis Fe/C-56]: S-rich region from 2 to 54 corrected with score 42
>CFEL-FEC-01-000178 	gi|89897986|ref|YP_515096.1| 50S ribosomal protein L34 [Chlamydophila felis Fe/C-56]: R-rich region from 2 to 41 corrected with score 41
>CFEL-FEC-01-000180 	gi|89897988|ref|YP_515098.1| 30S ribosomal protein S14 [Chlamydophila felis Fe/C-56]: K-rich region from 3 to 53 corrected with score 48
>CFEL-FEC-01-000181 	gi|89897989|ref|YP_515099.1| hypothetical protein CF0182 [Chlamydophila felis Fe/C-56]: N-rich region from 59 to 75 corrected with score 40
>CFEL-FEC-01-000182 	gi|89897990|ref|YP_515100.1| hypothetical protein CF0183 [Chlamydophila felis Fe/C-56]: E-rich region from 125 to 162 corrected with score 44
>CFEL-FEC-01-000208 	gi|89898016|ref|YP_515126.1| polymorphic outer membrane protein D [Chlamydophila felis Fe/C-56]: S-rich region from 39 to 752 corrected with score 92
>CFEL-FEC-01-000208 	gi|89898016|ref|YP_515126.1| polymorphic outer membrane protein D [Chlamydophila felis Fe/C-56]: K-rich region from 67 to 86 corrected with score 46
>CFEL-FEC-01-000209 	gi|89898017|ref|YP_515127.1| hypothetical protein CF0210 [Chlamydophila felis Fe/C-56]: L-rich region from 61 to 92 corrected with score 48
>CFEL-FEC-01-000212 	gi|89898020|ref|YP_515130.1| hypothetical protein CF0213 [Chlamydophila felis Fe/C-56]: P-rich region from 206 to 237 corrected with score 45
>CFEL-FEC-01-000212 	gi|89898020|ref|YP_515130.1| hypothetical protein CF0213 [Chlamydophila felis Fe/C-56]: L-rich region from 128 to 155 corrected with score 43
>CFEL-FEC-01-000214 	gi|89898022|ref|YP_515132.1| hypothetical protein CF0215 [Chlamydophila felis Fe/C-56]: I-rich region from 27 to 77 corrected with score 40
>CFEL-FEC-01-000215 	gi|89898023|ref|YP_515133.1| hypothetical protein CF0216 [Chlamydophila felis Fe/C-56]: E-rich region from 131 to 313 corrected with score 81
>CFEL-FEC-01-000216 	gi|89898024|ref|YP_515134.1| myosin heavy chain form B [Chlamydophila felis Fe/C-56]: Q-rich region from 95 to 585 corrected with score 174
>CFEL-FEC-01-000217 	gi|89898025|ref|YP_515135.1| myosin heavy chain form B [Chlamydophila felis Fe/C-56]: E-rich region from 152 to 379 corrected with score 61
>CFEL-FEC-01-000218 	gi|89898026|ref|YP_515136.1| hypothetical protein CF0219 [Chlamydophila felis Fe/C-56]: E-rich region from 103 to 237 corrected with score 66
>CFEL-FEC-01-000226 	gi|89898034|ref|YP_515144.1| transport permease [Chlamydophila felis Fe/C-56]: I-rich region from 141 to 186 corrected with score 44
>CFEL-FEC-01-000242 	gi|89898050|ref|YP_515160.1| translation initiation factor IF-3 [Chlamydophila felis Fe/C-56]: K-rich region from 64 to 117 corrected with score 41
>CFEL-FEC-01-000243 	gi|89898051|ref|YP_515161.1| 50S ribosomal protein L35 [Chlamydophila felis Fe/C-56]: K-rich region from 3 to 47 corrected with score 43
>CFEL-FEC-01-000246 	gi|89898054|ref|YP_515164.1| calcium binding EF-hand protein precursor [Chlamydophila felis Fe/C-56]: E-rich region from 92 to 172 corrected with score 53
>CFEL-FEC-01-000256 	gi|89898064|ref|YP_515174.1| hypothetical protein CF0257 [Chlamydophila felis Fe/C-56]: Q-rich region from 87 to 138 corrected with score 47
>CFEL-FEC-01-000258 	gi|89898066|ref|YP_515176.1| hypothetical protein CF0259 [Chlamydophila felis Fe/C-56]: Q-rich region from 49 to 125 corrected with score 48
>CFEL-FEC-01-000260 	gi|89898068|ref|YP_515178.1| myosin heavy chain [Chlamydophila felis Fe/C-56]: E-rich region from 256 to 391 corrected with score 44
>CFEL-FEC-01-000273 	gi|89898081|ref|YP_515191.1| hypothetical protein CF0274 [Chlamydophila felis Fe/C-56]: S-rich region from 4 to 287 corrected with score 105
>CFEL-FEC-01-000273 	gi|89898081|ref|YP_515191.1| hypothetical protein CF0274 [Chlamydophila felis Fe/C-56]: E-rich region from 230 to 275 corrected with score 52
>CFEL-FEC-01-000274 	gi|89898082|ref|YP_515192.1| hypothetical protein CF0275 [Chlamydophila felis Fe/C-56]: S-rich region from 20 to 243 corrected with score 81
>CFEL-FEC-01-000274 	gi|89898082|ref|YP_515192.1| hypothetical protein CF0275 [Chlamydophila felis Fe/C-56]: E-rich region from 131 to 200 corrected with score 43
>CFEL-FEC-01-000276 	gi|89898084|ref|YP_515194.1| hypothetical protein CF0277 [Chlamydophila felis Fe/C-56]: S-rich region from 7 to 285 corrected with score 105
>CFEL-FEC-01-000276 	gi|89898084|ref|YP_515194.1| hypothetical protein CF0277 [Chlamydophila felis Fe/C-56]: Q-rich region from 198 to 315 corrected with score 73
>CFEL-FEC-01-000276 	gi|89898084|ref|YP_515194.1| hypothetical protein CF0277 [Chlamydophila felis Fe/C-56]: E-rich region from 221 to 279 corrected with score 40
>CFEL-FEC-01-000277 	gi|89898085|ref|YP_515195.1| hypothetical protein CF0278 [Chlamydophila felis Fe/C-56]: Y-rich region from 49 to 71 corrected with score 53
>CFEL-FEC-01-000318 	gi|89898126|ref|YP_515236.1| hypothetical protein CF0319 [Chlamydophila felis Fe/C-56]: A-rich region from 88 to 125 corrected with score 59
>CFEL-FEC-01-000336 	gi|89898144|ref|YP_515254.1| hypothetical protein CF0337 [Chlamydophila felis Fe/C-56]: V-rich region from 43 to 97 corrected with score 47
>CFEL-FEC-01-000347 	gi|89898155|ref|YP_515265.1| signal peptidase I [Chlamydophila felis Fe/C-56]: Q-rich region from 8 to 64 corrected with score 44
>CFEL-FEC-01-000352 	gi|89898160|ref|YP_515270.1| signal recognition particle GTPase [Chlamydophila felis Fe/C-56]: K-rich region from 416 to 440 corrected with score 40
>CFEL-FEC-01-000377 	gi|89898185|ref|YP_515295.1| ATP-dependent Clp endopeptidase ATP-binding chain B [Chlamydophila felis Fe/C-56]: E-rich region from 412 to 534 corrected with score 71
>CFEL-FEC-01-000379 	gi|89898187|ref|YP_515297.1| polymorphic outer membrane protein [Chlamydophila felis Fe/C-56]: S-rich region from 11 to 273 corrected with score 109
>CFEL-FEC-01-000385 	gi|89898193|ref|YP_515303.1| serine/threonine protein kinase [Chlamydophila felis Fe/C-56]: E-rich region from 285 to 374 corrected with score 46
>CFEL-FEC-01-000387 	gi|89898195|ref|YP_515305.1| myosin heavy chain major plasmodial [Chlamydophila felis Fe/C-56]: V-rich region from 69 to 107 corrected with score 47
>CFEL-FEC-01-000387 	gi|89898195|ref|YP_515305.1| myosin heavy chain major plasmodial [Chlamydophila felis Fe/C-56]: Q-rich region from 1030 to 1218 corrected with score 43
>CFEL-FEC-01-000411 	gi|89898219|ref|YP_515329.1| hypothetical protein CF0412 [Chlamydophila felis Fe/C-56]: E-rich region from 194 to 216 corrected with score 42
>CFEL-FEC-01-000415 	gi|89898223|ref|YP_515333.1| hypothetical protein CF0416 [Chlamydophila felis Fe/C-56]: T-rich region from 143 to 229 corrected with score 59
>CFEL-FEC-01-000429 	gi|89898237|ref|YP_515347.1| hypothetical protein CF0430 [Chlamydophila felis Fe/C-56]: I-rich region from 75 to 101 corrected with score 40
>CFEL-FEC-01-000430 	gi|89898238|ref|YP_515348.1| hypothetical protein CF0431 [Chlamydophila felis Fe/C-56]: I-rich region from 68 to 100 corrected with score 50
>CFEL-FEC-01-000441 	gi|89898249|ref|YP_515359.1| adherence factor [Chlamydophila felis Fe/C-56]: K-rich region from 1077 to 1156 corrected with score 73
>CFEL-FEC-01-000441 	gi|89898249|ref|YP_515359.1| adherence factor [Chlamydophila felis Fe/C-56]: S-rich region from 8 to 289 corrected with score 64
>CFEL-FEC-01-000441 	gi|89898249|ref|YP_515359.1| adherence factor [Chlamydophila felis Fe/C-56]: P-rich region from 121 to 137 corrected with score 47
>CFEL-FEC-01-000441 	gi|89898249|ref|YP_515359.1| adherence factor [Chlamydophila felis Fe/C-56]: A-rich region from 1959 to 2056 corrected with score 44
>CFEL-FEC-01-000442 	gi|89898250|ref|YP_515360.1| phospholipase D endonuclease [Chlamydophila felis Fe/C-56]: S-rich region from 398 to 552 corrected with score 41
>CFEL-FEC-01-000457 	gi|89898265|ref|YP_515375.1| inclusion membrane protein [Chlamydophila felis Fe/C-56]: I-rich region from 67 to 113 corrected with score 55
>CFEL-FEC-01-000457 	gi|89898265|ref|YP_515375.1| inclusion membrane protein [Chlamydophila felis Fe/C-56]: Q-rich region from 113 to 162 corrected with score 42
>CFEL-FEC-01-000457 	gi|89898265|ref|YP_515375.1| inclusion membrane protein [Chlamydophila felis Fe/C-56]: S-rich region from 282 to 346 corrected with score 40
>CFEL-FEC-01-000469 	gi|89898277|ref|YP_515387.1| hypothetical protein CF0470 [Chlamydophila felis Fe/C-56]: P-rich region from 354 to 370 corrected with score 52
>CFEL-FEC-01-000471 	gi|89898279|ref|YP_515389.1| hypothetical protein CF0472 [Chlamydophila felis Fe/C-56]: P-rich region from 131 to 155 corrected with score 71
>CFEL-FEC-01-000475 	gi|89898283|ref|YP_515393.1| 30S ribosomal protein S9 [Chlamydophila felis Fe/C-56]: K-rich region from 92 to 133 corrected with score 49
>CFEL-FEC-01-000484 	gi|89898292|ref|YP_515402.1| hypothetical protein CF0485 [Chlamydophila felis Fe/C-56]: S-rich region from 2 to 98 corrected with score 56
>CFEL-FEC-01-000484 	gi|89898292|ref|YP_515402.1| hypothetical protein CF0485 [Chlamydophila felis Fe/C-56]: N-rich region from 2 to 10 corrected with score 42
>CFEL-FEC-01-000492 	gi|89898300|ref|YP_515410.1| hypothetical protein CF0493 [Chlamydophila felis Fe/C-56]: S-rich region from 236 to 337 corrected with score 47
>CFEL-FEC-01-000493 	gi|89898301|ref|YP_515411.1| synaptonemal complex protein [Chlamydophila felis Fe/C-56]: S-rich region from 272 to 361 corrected with score 74
>CFEL-FEC-01-000493 	gi|89898301|ref|YP_515411.1| synaptonemal complex protein [Chlamydophila felis Fe/C-56]: Q-rich region from 114 to 270 corrected with score 64
>CFEL-FEC-01-000503 	gi|89898311|ref|YP_515421.1| hypothetical protein CF0504 [Chlamydophila felis Fe/C-56]: V-rich region from 50 to 100 corrected with score 46
>CFEL-FEC-01-000507 	gi|89898315|ref|YP_515425.1| hypothetical protein CF0508 [Chlamydophila felis Fe/C-56]: V-rich region from 41 to 87 corrected with score 46
>CFEL-FEC-01-000509 	gi|89898317|ref|YP_515427.1| amino acid antiporter [Chlamydophila felis Fe/C-56]: W-rich region from 81 to 98 corrected with score 40
>CFEL-FEC-01-000512 	gi|89898320|ref|YP_515430.1| hypothetical protein CF0513 [Chlamydophila felis Fe/C-56]: L-rich region from 56 to 100 corrected with score 45
>CFEL-FEC-01-000515 	gi|89898323|ref|YP_515433.1| inclusion membrane protein [Chlamydophila felis Fe/C-56]: I-rich region from 119 to 186 corrected with score 43
>CFEL-FEC-01-000516 	gi|89898324|ref|YP_515434.1| inclusion membrane protein [Chlamydophila felis Fe/C-56]: V-rich region from 103 to 168 corrected with score 46
>CFEL-FEC-01-000525 	gi|89898333|ref|YP_515443.1| outer membrane protein/ompH [Chlamydophila felis Fe/C-56]: E-rich region from 42 to 106 corrected with score 51
>CFEL-FEC-01-000532 	gi|89898340|ref|YP_515450.1| hypothetical protein CF0533 [Chlamydophila felis Fe/C-56]: V-rich region from 80 to 103 corrected with score 49
>CFEL-FEC-01-000541 	gi|89898349|ref|YP_515459.1| translation initiation factor IF-2 [Chlamydophila felis Fe/C-56]: S-rich region from 33 to 246 corrected with score 65
>CFEL-FEC-01-000541 	gi|89898349|ref|YP_515459.1| translation initiation factor IF-2 [Chlamydophila felis Fe/C-56]: K-rich region from 186 to 287 corrected with score 50
>CFEL-FEC-01-000541 	gi|89898349|ref|YP_515459.1| translation initiation factor IF-2 [Chlamydophila felis Fe/C-56]: K-rich region from 2 to 59 corrected with score 45
>CFEL-FEC-01-000547 	gi|89898355|ref|YP_515465.1| type III secretory flagellar biosynthesis [Chlamydophila felis Fe/C-56]: L-rich region from 27 to 91 corrected with score 54
>CFEL-FEC-01-000548 	gi|89898356|ref|YP_515466.1| low calcium response protein E [Chlamydophila felis Fe/C-56]: E-rich region from 27 to 126 corrected with score 54
>CFEL-FEC-01-000548 	gi|89898356|ref|YP_515466.1| low calcium response protein E [Chlamydophila felis Fe/C-56]: S-rich region from 2 to 123 corrected with score 40
>CFEL-FEC-01-000554 	gi|89898362|ref|YP_515472.1| hypothetical protein CF0555 [Chlamydophila felis Fe/C-56]: K-rich region from 51 to 122 corrected with score 52
>CFEL-FEC-01-000555 	gi|89898363|ref|YP_515473.1| hypothetical protein CF0556 [Chlamydophila felis Fe/C-56]: S-rich region from 4 to 467 corrected with score 146
>CFEL-FEC-01-000556 	gi|89898364|ref|YP_515474.1| late transcription unit B protein [Chlamydophila felis Fe/C-56]: K-rich region from 5 to 53 corrected with score 58
>CFEL-FEC-01-000573 	gi|89898381|ref|YP_515491.1| hypothetical protein CF0574 [Chlamydophila felis Fe/C-56]: I-rich region from 32 to 82 corrected with score 46
>CFEL-FEC-01-000574 	gi|89898382|ref|YP_515492.1| GTP-binding protein LepA [Chlamydophila felis Fe/C-56]: K-rich region from 567 to 587 corrected with score 41
>CFEL-FEC-01-000581 	gi|89898389|ref|YP_515499.1| ATPase associated with chromosome architecture [Chlamydophila felis Fe/C-56]: P-rich region from 19 to 83 corrected with score 46
>CFEL-FEC-01-000587 	gi|89898395|ref|YP_515505.1| hypothetical protein CF0588 [Chlamydophila felis Fe/C-56]: E-rich region from 27 to 127 corrected with score 63
>CFEL-FEC-01-000589 	gi|89898397|ref|YP_515507.1| hypothetical protein CF0590 [Chlamydophila felis Fe/C-56]: T-rich region from 34 to 494 corrected with score 222
>CFEL-FEC-01-000589 	gi|89898397|ref|YP_515507.1| hypothetical protein CF0590 [Chlamydophila felis Fe/C-56]: P-rich region from 310 to 321 corrected with score 43
>CFEL-FEC-01-000589 	gi|89898397|ref|YP_515507.1| hypothetical protein CF0590 [Chlamydophila felis Fe/C-56]: G-rich region from 461 to 472 corrected with score 40
>CFEL-FEC-01-000590 	gi|89898398|ref|YP_515508.1| cell wall associated hydrolases [Chlamydophila felis Fe/C-56]: S-rich region from 6 to 423 corrected with score 55
>CFEL-FEC-01-000594 	gi|89898402|ref|YP_515512.1| eggshell protein p48 [Chlamydophila felis Fe/C-56]: K-rich region from 5 to 155 corrected with score 142
>CFEL-FEC-01-000594 	gi|89898402|ref|YP_515512.1| eggshell protein p48 [Chlamydophila felis Fe/C-56]: A-rich region from 9 to 192 corrected with score 91
>CFEL-FEC-01-000594 	gi|89898402|ref|YP_515512.1| eggshell protein p48 [Chlamydophila felis Fe/C-56]: T-rich region from 29 to 133 corrected with score 60
>CFEL-FEC-01-000595 	gi|89898403|ref|YP_515513.1| histone H1-like protein Hc2 [Chlamydophila felis Fe/C-56]: A-rich region from 6 to 151 corrected with score 71
>CFEL-FEC-01-000599 	gi|89898407|ref|YP_515517.1| glycogen hydrolase [Chlamydophila felis Fe/C-56]: N-rich region from 448 to 479 corrected with score 46
>CFEL-FEC-01-000609 	gi|89898417|ref|YP_515527.1| hypothetical protein CF0610 [Chlamydophila felis Fe/C-56]: A-rich region from 33 to 80 corrected with score 47
>CFEL-FEC-01-000610 	gi|89898418|ref|YP_515528.1| hypothetical protein CF0611 [Chlamydophila felis Fe/C-56]: E-rich region from 104 to 151 corrected with score 53
>CFEL-FEC-01-000610 	gi|89898418|ref|YP_515528.1| hypothetical protein CF0611 [Chlamydophila felis Fe/C-56]: V-rich region from 44 to 90 corrected with score 44
>CFEL-FEC-01-000617 	gi|89898425|ref|YP_515535.1| hypothetical protein CF0618 [Chlamydophila felis Fe/C-56]: S-rich region from 2 to 410 corrected with score 63
>CFEL-FEC-01-000617 	gi|89898425|ref|YP_515535.1| hypothetical protein CF0618 [Chlamydophila felis Fe/C-56]: C-rich region from 413 to 454 corrected with score 45
>CFEL-FEC-01-000618 	gi|89898426|ref|YP_515536.1| hypothetical protein CF0619 [Chlamydophila felis Fe/C-56]: S-rich region from 6 to 81 corrected with score 54
>CFEL-FEC-01-000636 	gi|89898444|ref|YP_515554.1| hypothetical protein CF0637 [Chlamydophila felis Fe/C-56]: E-rich region from 128 to 151 corrected with score 52
>CFEL-FEC-01-000651 	gi|89898459|ref|YP_515569.1| ATP-dependent Clp endopeptidase ATP-binding chain B [Chlamydophila felis Fe/C-56]: S-rich region from 153 to 186 corrected with score 52
>CFEL-FEC-01-000651 	gi|89898459|ref|YP_515569.1| ATP-dependent Clp endopeptidase ATP-binding chain B [Chlamydophila felis Fe/C-56]: E-rich region from 432 to 498 corrected with score 51
>CFEL-FEC-01-000655 	gi|89898463|ref|YP_515573.1| hypothetical protein CF0656 [Chlamydophila felis Fe/C-56]: K-rich region from 48 to 124 corrected with score 77
>CFEL-FEC-01-000655 	gi|89898463|ref|YP_515573.1| hypothetical protein CF0656 [Chlamydophila felis Fe/C-56]: S-rich region from 356 to 486 corrected with score 54
>CFEL-FEC-01-000668 	gi|89898476|ref|YP_515586.1| hypothetical protein CF0669 [Chlamydophila felis Fe/C-56]: L-rich region from 108 to 127 corrected with score 40
>CFEL-FEC-01-000675 	gi|89898483|ref|YP_515593.1| hypothetical protein CF0675 [Chlamydophila felis Fe/C-56]: L-rich region from 393 to 469 corrected with score 48
>CFEL-FEC-01-000676 	gi|89898484|ref|YP_515594.1| hypothetical protein CF0677 [Chlamydophila felis Fe/C-56]: P-rich region from 94 to 126 corrected with score 56
>CFEL-FEC-01-000679 	gi|89898487|ref|YP_515597.1| heat shock protein dnaJ [Chlamydophila felis Fe/C-56]: G-rich region from 67 to 133 corrected with score 66
>CFEL-FEC-01-000680 	gi|89898488|ref|YP_515598.1| 30S ribosomal protein S21 [Chlamydophila felis Fe/C-56]: K-rich region from 20 to 58 corrected with score 40
>CFEL-FEC-01-000684 	gi|89898492|ref|YP_515602.1| hypothetical protein CF0685 [Chlamydophila felis Fe/C-56]: S-rich region from 147 to 208 corrected with score 59
>CFEL-FEC-01-000684 	gi|89898492|ref|YP_515602.1| hypothetical protein CF0685 [Chlamydophila felis Fe/C-56]: K-rich region from 121 to 164 corrected with score 49
>CFEL-FEC-01-000704 	gi|89898512|ref|YP_515622.1| hypothetical protein CF0705 [Chlamydophila felis Fe/C-56]: C-rich region from 96 to 126 corrected with score 46
>CFEL-FEC-01-000704 	gi|89898512|ref|YP_515622.1| hypothetical protein CF0705 [Chlamydophila felis Fe/C-56]: S-rich region from 393 to 482 corrected with score 46
>CFEL-FEC-01-000704 	gi|89898512|ref|YP_515622.1| hypothetical protein CF0705 [Chlamydophila felis Fe/C-56]: T-rich region from 11 to 55 corrected with score 43
>CFEL-FEC-01-000705 	gi|89898513|ref|YP_515623.1| hypothetical protein CF0706 [Chlamydophila felis Fe/C-56]: C-rich region from 73 to 99 corrected with score 47
>CFEL-FEC-01-000712 	gi|89898520|ref|YP_515630.1| hypothetical protein CF0713 [Chlamydophila felis Fe/C-56]: E-rich region from 343 to 383 corrected with score 59
>CFEL-FEC-01-000712 	gi|89898520|ref|YP_515630.1| hypothetical protein CF0713 [Chlamydophila felis Fe/C-56]: E-rich region from 181 to 271 corrected with score 45
>CFEL-FEC-01-000712 	gi|89898520|ref|YP_515630.1| hypothetical protein CF0713 [Chlamydophila felis Fe/C-56]: S-rich region from 302 to 383 corrected with score 41
>CFEL-FEC-01-000717 	gi|89898525|ref|YP_515635.1| nuclear maintenance protein SRP40 [Chlamydophila felis Fe/C-56]: S-rich region from 11 to 208 corrected with score 140
>CFEL-FEC-01-000718 	gi|89898526|ref|YP_515636.1| outer membrane protein [Chlamydophila felis Fe/C-56]: S-rich region from 2 to 755 corrected with score 256
>CFEL-FEC-01-000720 	gi|89898528|ref|YP_515638.1| polymorphic outer membrane protein 9 [Chlamydophila felis Fe/C-56]: S-rich region from 11 to 377 corrected with score 119
>CFEL-FEC-01-000721 	gi|89898529|ref|YP_515639.1| polymorphic outer membrane protein [Chlamydophila felis Fe/C-56]: S-rich region from 11 to 498 corrected with score 97
>CFEL-FEC-01-000721 	gi|89898529|ref|YP_515639.1| polymorphic outer membrane protein [Chlamydophila felis Fe/C-56]: T-rich region from 466 to 528 corrected with score 40
>CFEL-FEC-01-000722 	gi|89898530|ref|YP_515640.1| outer membrane protein [Chlamydophila felis Fe/C-56]: S-rich region from 11 to 464 corrected with score 155
>CFEL-FEC-01-000724 	gi|89898532|ref|YP_515642.1| polymorphic outer membrane protein G/9 family protein [Chlamydophila felis Fe/C-56]: S-rich region from 11 to 513 corrected with score 181
>CFEL-FEC-01-000725 	gi|89898533|ref|YP_515643.1| polymorphic outer membrane protein [Chlamydophila felis Fe/C-56]: S-rich region from 17 to 253 corrected with score 67
>CFEL-FEC-01-000726 	gi|89898534|ref|YP_515644.1| polymorphic outer membrane protein [Chlamydophila felis Fe/C-56]: S-rich region from 12 to 380 corrected with score 76
>CFEL-FEC-01-000727 	gi|89898535|ref|YP_515645.1| polymorphic outer membrane protein [Chlamydophila felis Fe/C-56]: S-rich region from 4 to 484 corrected with score 173
>CFEL-FEC-01-000727 	gi|89898535|ref|YP_515645.1| polymorphic outer membrane protein [Chlamydophila felis Fe/C-56]: P-rich region from 195 to 212 corrected with score 66
>CFEL-FEC-01-000727 	gi|89898535|ref|YP_515645.1| polymorphic outer membrane protein [Chlamydophila felis Fe/C-56]: P-rich region from 78 to 84 corrected with score 49
>CFEL-FEC-01-000729 	gi|89898537|ref|YP_515647.1| polymorphic outer membrane protein G/9 family protein [Chlamydophila felis Fe/C-56]: S-rich region from 45 to 630 corrected with score 104
>CFEL-FEC-01-000730 	gi|89898538|ref|YP_515648.1| polymorphic outer membrane protein H family protein [Chlamydophila felis Fe/C-56]: S-rich region from 61 to 470 corrected with score 77
>CFEL-FEC-01-000732 	gi|89898540|ref|YP_515650.1| polymorphic outer membrane protein [Chlamydophila felis Fe/C-56]: S-rich region from 133 to 376 corrected with score 53
>CFEL-FEC-01-000734 	gi|89898542|ref|YP_515652.1| polymorphic outer membrane protein E family protein [Chlamydophila felis Fe/C-56]: N-rich region from 283 to 452 corrected with score 48
>CFEL-FEC-01-000736 	gi|89898544|ref|YP_515654.1| polymorphic outer membrane protein F family protein [Chlamydophila felis Fe/C-56]: T-rich region from 460 to 541 corrected with score 42
>CFEL-FEC-01-000736 	gi|89898544|ref|YP_515654.1| polymorphic outer membrane protein F family protein [Chlamydophila felis Fe/C-56]: S-rich region from 139 to 293 corrected with score 41
>CFEL-FEC-01-000737 	gi|89898545|ref|YP_515655.1| hypothetical protein CF0738 [Chlamydophila felis Fe/C-56]: S-rich region from 17 to 193 corrected with score 50
>CFEL-FEC-01-000742 	gi|89898550|ref|YP_515660.1| GTP-binding protein [Chlamydophila felis Fe/C-56]: K-rich region from 183 to 225 corrected with score 42
>CFEL-FEC-01-000746 	gi|89898554|ref|YP_515664.1| hypothetical protein CF0747 [Chlamydophila felis Fe/C-56]: P-rich region from 68 to 165 corrected with score 115
>CFEL-FEC-01-000746 	gi|89898554|ref|YP_515664.1| hypothetical protein CF0747 [Chlamydophila felis Fe/C-56]: Q-rich region from 455 to 474 corrected with score 43
>CFEL-FEC-01-000746 	gi|89898554|ref|YP_515664.1| hypothetical protein CF0747 [Chlamydophila felis Fe/C-56]: P-rich region from 4 to 14 corrected with score 40
>CFEL-FEC-01-000755 	gi|89898563|ref|YP_515673.1| hypothetical protein CF0756 [Chlamydophila felis Fe/C-56]: C-rich region from 8 to 23 corrected with score 40
>CFEL-FEC-01-000760 	gi|89898568|ref|YP_515678.1| hypothetical protein CF0761 [Chlamydophila felis Fe/C-56]: S-rich region from 328 to 398 corrected with score 55
>CFEL-FEC-01-000760 	gi|89898568|ref|YP_515678.1| hypothetical protein CF0761 [Chlamydophila felis Fe/C-56]: S-rich region from 2 to 92 corrected with score 48
>CFEL-FEC-01-000764 	gi|89898572|ref|YP_515682.1| molecular chaperone DnaK [Chlamydophila felis Fe/C-56]: E-rich region from 493 to 589 corrected with score 65
>CFEL-FEC-01-000764 	gi|89898572|ref|YP_515682.1| molecular chaperone DnaK [Chlamydophila felis Fe/C-56]: S-rich region from 572 to 650 corrected with score 55
>CFEL-FEC-01-000765 	gi|89898573|ref|YP_515683.1| ribonuclease R [Chlamydophila felis Fe/C-56]: K-rich region from 652 to 676 corrected with score 41
>CFEL-FEC-01-000786 	gi|89898594|ref|YP_515704.1| hypothetical protein CF0787 [Chlamydophila felis Fe/C-56]: E-rich region from 25 to 174 corrected with score 58
>CFEL-FEC-01-000788 	gi|89898596|ref|YP_515706.1| branched-chain alpha-keto acid dehydrogenase subunit E2 [Chlamydophila felis Fe/C-56]: S-rich region from 76 to 189 corrected with score 46
>CFEL-FEC-01-000801 	gi|89898609|ref|YP_515719.1| polymorphic outer membrane protein B [Chlamydophila felis Fe/C-56]: S-rich region from 25 to 1451 corrected with score 322
>CFEL-FEC-01-000806 	gi|89898614|ref|YP_515724.1| ABC transporter of metals [Chlamydophila felis Fe/C-56]: I-rich region from 184 to 245 corrected with score 52
>CFEL-FEC-01-000807 	gi|89898615|ref|YP_515725.1| GTPase ObgE [Chlamydophila felis Fe/C-56]: G-rich region from 31 to 43 corrected with score 40
>CFEL-FEC-01-000836 	gi|89898644|ref|YP_515754.1| hypothetical protein CF0837 [Chlamydophila felis Fe/C-56]: T-rich region from 2 to 125 corrected with score 110
>CFEL-FEC-01-000836 	gi|89898644|ref|YP_515754.1| hypothetical protein CF0837 [Chlamydophila felis Fe/C-56]: P-rich region from 460 to 484 corrected with score 74
>CFEL-FEC-01-000836 	gi|89898644|ref|YP_515754.1| hypothetical protein CF0837 [Chlamydophila felis Fe/C-56]: T-rich region from 346 to 415 corrected with score 59
>CFEL-FEC-01-000836 	gi|89898644|ref|YP_515754.1| hypothetical protein CF0837 [Chlamydophila felis Fe/C-56]: S-rich region from 50 to 161 corrected with score 58
>CFEL-FEC-01-000836 	gi|89898644|ref|YP_515754.1| hypothetical protein CF0837 [Chlamydophila felis Fe/C-56]: T-rich region from 742 to 851 corrected with score 53
>CFEL-FEC-01-000850 	gi|89898658|ref|YP_515768.1| inclusion membrane protein [Chlamydophila felis Fe/C-56]: Q-rich region from 420 to 726 corrected with score 87
>CFEL-FEC-01-000879 	gi|89898687|ref|YP_515797.1| ADP/ATP translocase [Chlamydophila felis Fe/C-56]: I-rich region from 474 to 506 corrected with score 43
>CFEL-FEC-01-000887 	gi|89898695|ref|YP_515805.1| hypothetical protein CF0888 [Chlamydophila felis Fe/C-56]: Q-rich region from 98 to 285 corrected with score 61
>CFEL-FEC-01-000888 	gi|89898696|ref|YP_515806.1| hypothetical protein CF0889 [Chlamydophila felis Fe/C-56]: K-rich region from 136 to 194 corrected with score 62
>CFEL-FEC-01-000892 	gi|89898700|ref|YP_515810.1| 30S ribosomal protein S11 [Chlamydophila felis Fe/C-56]: A-rich region from 48 to 112 corrected with score 40
>CFEL-FEC-01-000895 	gi|89898703|ref|YP_515813.1| 50S ribosomal protein L15 [Chlamydophila felis Fe/C-56]: G-rich region from 21 to 55 corrected with score 48
>CFEL-FEC-01-000929 	gi|89898737|ref|YP_515847.1| hexosphosphate transport [Chlamydophila felis Fe/C-56]: E-rich region from 222 to 253 corrected with score 43
>CFEL-FEC-01-000929 	gi|89898737|ref|YP_515847.1| hexosphosphate transport [Chlamydophila felis Fe/C-56]: W-rich region from 128 to 140 corrected with score 40
>CFEL-FEC-01-000929 	gi|89898737|ref|YP_515847.1| hexosphosphate transport [Chlamydophila felis Fe/C-56]: Y-rich region from 28 to 48 corrected with score 40
>CFEL-FEC-01-000936 	gi|89898744|ref|YP_515854.1| penicillin-binding protein 5 [Chlamydophila felis Fe/C-56]: H-rich region from 170 to 186 corrected with score 41
>CFEL-FEC-01-000941 	gi|89898749|ref|YP_515859.1| hypothetical protein CF0942 [Chlamydophila felis Fe/C-56]: S-rich region from 17 to 305 corrected with score 157
>CFEL-FEC-01-000961 	gi|89898769|ref|YP_515879.1| ribosome recycling factor [Chlamydophila felis Fe/C-56]: K-rich region from 113 to 174 corrected with score 42
>CFEL-FEC-01-000964 	gi|89898772|ref|YP_515882.1| type III secretion general secretion pathway protein D [Chlamydophila felis Fe/C-56]: E-rich region from 116 to 232 corrected with score 61
>CFEL-FEC-01-000967 	gi|89898775|ref|YP_515885.1| hypothetical protein CF0968 [Chlamydophila felis Fe/C-56]: Q-rich region from 251 to 281 corrected with score 61
>CFEL-FEC-01-000967 	gi|89898775|ref|YP_515885.1| hypothetical protein CF0968 [Chlamydophila felis Fe/C-56]: E-rich region from 21 to 88 corrected with score 52
>CFEL-FEC-01-000968 	gi|89898776|ref|YP_515886.1| hypothetical protein CF0969 [Chlamydophila felis Fe/C-56]: E-rich region from 13 to 149 corrected with score 91
>CFEL-FEC-01-000974 	gi|89898782|ref|YP_515892.1| adenylate cyclase [Chlamydophila felis Fe/C-56]: E-rich region from 99 to 356 corrected with score 217
>CFEL-FEC-01-000974 	gi|89898782|ref|YP_515892.1| adenylate cyclase [Chlamydophila felis Fe/C-56]: S-rich region from 113 to 355 corrected with score 58
>CFEL-FEC-01-000974 	gi|89898782|ref|YP_515892.1| adenylate cyclase [Chlamydophila felis Fe/C-56]: E-rich region from 516 to 535 corrected with score 43
>CFEL-FEC-01-000989 	gi|89898797|ref|YP_515907.1| hypothetical protein CF0990 [Chlamydophila felis Fe/C-56]: Q-rich region from 810 to 839 corrected with score 46
>CFEL-FEC-01-000989 	gi|89898797|ref|YP_515907.1| hypothetical protein CF0990 [Chlamydophila felis Fe/C-56]: P-rich region from 76 to 94 corrected with score 44
>CFEL-FEC-01-000990 	gi|89898798|ref|YP_515908.1| wall surface anchor family protein [Chlamydophila felis Fe/C-56]: S-rich region from 9 to 553 corrected with score 125
>CFEL-FEC-01-000998 	gi|89898806|ref|YP_515916.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta [Chlamydophila felis Fe/C-56]: S-rich region from 670 to 822 corrected with score 40
>CMUR-NIG-01-000016 	gi|15834635|ref|NP_296394.1| hypothetical protein TC0010 [Chlamydia muridarum Nigg]: F-rich region from 167 to 203 corrected with score 45
>CMUR-NIG-01-000018 	gi|15834637|ref|NP_296396.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydia muridarum Nigg]: K-rich region from 744 to 786 corrected with score 62
>CMUR-NIG-01-000018 	gi|15834637|ref|NP_296396.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydia muridarum Nigg]: E-rich region from 437 to 474 corrected with score 57
>CMUR-NIG-01-000018 	gi|15834637|ref|NP_296396.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydia muridarum Nigg]: T-rich region from 740 to 795 corrected with score 42
>CMUR-NIG-01-000037 	gi|15834657|ref|NP_296416.1| DNA topoisomerase IV subunit B [Chlamydia muridarum Nigg]: K-rich region from 307 to 384 corrected with score 46
>CMUR-NIG-01-000040 	gi|15834660|ref|NP_296419.1| hypothetical protein TC0035 [Chlamydia muridarum Nigg]: E-rich region from 100 to 339 corrected with score 183
>CMUR-NIG-01-000040 	gi|15834660|ref|NP_296419.1| hypothetical protein TC0035 [Chlamydia muridarum Nigg]: S-rich region from 109 to 320 corrected with score 102
>CMUR-NIG-01-000046 	gi|15834666|ref|NP_296425.1| hypothetical protein TC0041 [Chlamydia muridarum Nigg]: E-rich region from 13 to 165 corrected with score 100
>CMUR-NIG-01-000047 	gi|15834667|ref|NP_296426.1| hypothetical protein TC0042 [Chlamydia muridarum Nigg]: E-rich region from 16 to 89 corrected with score 53
>CMUR-NIG-01-000047 	gi|15834667|ref|NP_296426.1| hypothetical protein TC0042 [Chlamydia muridarum Nigg]: Q-rich region from 252 to 282 corrected with score 48
>CMUR-NIG-01-000047 	gi|15834667|ref|NP_296426.1| hypothetical protein TC0042 [Chlamydia muridarum Nigg]: S-rich region from 37 to 80 corrected with score 41
>CMUR-NIG-01-000071 	gi|15834691|ref|NP_296450.1| hypothetical protein TC0066 [Chlamydia muridarum Nigg]: S-rich region from 6 to 163 corrected with score 72
>CMUR-NIG-01-000072 	gi|15834692|ref|NP_296451.1| hypothetical protein TC0067 [Chlamydia muridarum Nigg]: E-rich region from 14 to 80 corrected with score 44
>CMUR-NIG-01-000081 	gi|15834701|ref|NP_296460.1| GTP-binding protein EngA [Chlamydia muridarum Nigg]: E-rich region from 169 to 212 corrected with score 47
>CMUR-NIG-01-000085 	gi|15834705|ref|NP_296464.1| trigger factor [Chlamydia muridarum Nigg]: E-rich region from 246 to 352 corrected with score 44
>CMUR-NIG-01-000122 	gi|15834743|ref|NP_296502.1| histone H1-like protein HC1 [Chlamydia muridarum Nigg]: K-rich region from 4 to 125 corrected with score 111
>CMUR-NIG-01-000122 	gi|15834743|ref|NP_296502.1| histone H1-like protein HC1 [Chlamydia muridarum Nigg]: A-rich region from 65 to 114 corrected with score 40
>CMUR-NIG-01-000159 	gi|15834780|ref|NP_296539.1| hypothetical protein TC0160 [Chlamydia muridarum Nigg]: P-rich region from 69 to 99 corrected with score 62
>CMUR-NIG-01-000169 	gi|15834790|ref|NP_296549.1| 30S ribosomal protein S14 [Chlamydia muridarum Nigg]: K-rich region from 3 to 53 corrected with score 43
>CMUR-NIG-01-000196 	gi|15834817|ref|NP_296576.1| polymorphic membrane protein D family protein [Chlamydia muridarum Nigg]: S-rich region from 2 to 568 corrected with score 81
>CMUR-NIG-01-000196 	gi|15834817|ref|NP_296576.1| polymorphic membrane protein D family protein [Chlamydia muridarum Nigg]: E-rich region from 719 to 781 corrected with score 48
>CMUR-NIG-01-000205 	gi|15834826|ref|NP_296585.1| hypothetical protein TC0206 [Chlamydia muridarum Nigg]: L-rich region from 141 to 186 corrected with score 46
>CMUR-NIG-01-000221 	gi|15834842|ref|NP_296601.1| 50S ribosomal protein L35 [Chlamydia muridarum Nigg]: K-rich region from 3 to 47 corrected with score 40
>CMUR-NIG-01-000234 	gi|15834855|ref|NP_296614.1| hypothetical protein TC0235 [Chlamydia muridarum Nigg]: Q-rich region from 61 to 148 corrected with score 41
>CMUR-NIG-01-000236 	gi|15834857|ref|NP_296616.1| hypothetical protein TC0237 [Chlamydia muridarum Nigg]: Q-rich region from 46 to 117 corrected with score 51
>CMUR-NIG-01-000238 	gi|15834859|ref|NP_296618.1| hypothetical protein TC0239 [Chlamydia muridarum Nigg]: E-rich region from 230 to 367 corrected with score 71
>CMUR-NIG-01-000244 	gi|15834865|ref|NP_296624.1| sulfate transporter family protein [Chlamydia muridarum Nigg]: L-rich region from 371 to 455 corrected with score 40
>CMUR-NIG-01-000249 	gi|15834870|ref|NP_296629.1| hypothetical protein TC0250 [Chlamydia muridarum Nigg]: S-rich region from 84 to 311 corrected with score 90
>CMUR-NIG-01-000249 	gi|15834870|ref|NP_296629.1| hypothetical protein TC0250 [Chlamydia muridarum Nigg]: E-rich region from 228 to 298 corrected with score 51
>CMUR-NIG-01-000250 	gi|15834871|ref|NP_296630.1| hypothetical protein TC0251 [Chlamydia muridarum Nigg]: S-rich region from 2 to 235 corrected with score 91
>CMUR-NIG-01-000252 	gi|15834873|ref|NP_296632.1| hypothetical protein TC0253 [Chlamydia muridarum Nigg]: S-rich region from 109 to 342 corrected with score 137
>CMUR-NIG-01-000252 	gi|15834873|ref|NP_296632.1| hypothetical protein TC0253 [Chlamydia muridarum Nigg]: E-rich region from 225 to 296 corrected with score 66
>CMUR-NIG-01-000253 	gi|15834874|ref|NP_296633.1| hypothetical protein TC0254 [Chlamydia muridarum Nigg]: Y-rich region from 52 to 64 corrected with score 51
>CMUR-NIG-01-000253 	gi|15834874|ref|NP_296633.1| hypothetical protein TC0254 [Chlamydia muridarum Nigg]: K-rich region from 86 to 105 corrected with score 47
>CMUR-NIG-01-000259 	gi|15834880|ref|NP_296639.1| hypothetical protein TC0260 [Chlamydia muridarum Nigg]: P-rich region from 72 to 103 corrected with score 44
>CMUR-NIG-01-000260 	gi|15834881|ref|NP_296640.1| polymorphic membrane protein E/F family protein [Chlamydia muridarum Nigg]: T-rich region from 411 to 567 corrected with score 61
>CMUR-NIG-01-000261 	gi|15834882|ref|NP_296641.1| polymorphic membrane protein E/F family protein [Chlamydia muridarum Nigg]: T-rich region from 640 to 715 corrected with score 87
>CMUR-NIG-01-000263 	gi|15834884|ref|NP_296643.1| polymorphic membrane protein H family protein [Chlamydia muridarum Nigg]: T-rich region from 434 to 610 corrected with score 67
>CMUR-NIG-01-000265 	gi|15834886|ref|NP_296645.1| hypothetical protein TC0266 [Chlamydia muridarum Nigg]: C-rich region from 73 to 78 corrected with score 45
>CMUR-NIG-01-000266 	gi|15834887|ref|NP_296646.1| polymorphic membrane protein G family protein [Chlamydia muridarum Nigg]: S-rich region from 107 to 769 corrected with score 74
>CMUR-NIG-01-000267 	gi|15834888|ref|NP_296647.1| hypothetical protein TC0268 [Chlamydia muridarum Nigg]: S-rich region from 16 to 111 corrected with score 64
>CMUR-NIG-01-000272 	gi|15834893|ref|NP_296652.1| hypothetical protein TC0273 [Chlamydia muridarum Nigg]: S-rich region from 155 to 356 corrected with score 89
>CMUR-NIG-01-000289 	gi|15834910|ref|NP_296669.1| hypothetical protein TC0290 [Chlamydia muridarum Nigg]: F-rich region from 15 to 28 corrected with score 41
>CMUR-NIG-01-000290 	gi|15834911|ref|NP_296670.1| 50S ribosomal protein L31 type B [Chlamydia muridarum Nigg]: K-rich region from 60 to 108 corrected with score 40
>CMUR-NIG-01-000311 	gi|15834932|ref|NP_296691.1| glycosyl hydrolase family protein [Chlamydia muridarum Nigg]: N-rich region from 449 to 471 corrected with score 41
>CMUR-NIG-01-000315 	gi|15834936|ref|NP_296695.1| Hc2 nucleoprotein [Chlamydia muridarum Nigg]: K-rich region from 5 to 162 corrected with score 144
>CMUR-NIG-01-000315 	gi|15834936|ref|NP_296695.1| Hc2 nucleoprotein [Chlamydia muridarum Nigg]: A-rich region from 12 to 182 corrected with score 142
>CMUR-NIG-01-000318 	gi|15834939|ref|NP_296698.1| hypothetical protein TC0319 [Chlamydia muridarum Nigg]: T-rich region from 181 to 423 corrected with score 63
>CMUR-NIG-01-000319 	gi|15834940|ref|NP_296699.1| hypothetical protein TC0320 [Chlamydia muridarum Nigg]: T-rich region from 294 to 396 corrected with score 80
>CMUR-NIG-01-000320 	gi|15834941|ref|NP_296700.1| hypothetical protein TC0321 [Chlamydia muridarum Nigg]: T-rich region from 152 to 444 corrected with score 135
>CMUR-NIG-01-000322 	gi|15834943|ref|NP_296702.1| hypothetical protein TC0323 [Chlamydia muridarum Nigg]: E-rich region from 27 to 127 corrected with score 57
>CMUR-NIG-01-000327 	gi|15834948|ref|NP_296707.1| hypothetical protein TC0328 [Chlamydia muridarum Nigg]: P-rich region from 110 to 126 corrected with score 46
>CMUR-NIG-01-000333 	gi|15834954|ref|NP_296713.1| GTP-binding protein LepA [Chlamydia muridarum Nigg]: K-rich region from 567 to 587 corrected with score 41
>CMUR-NIG-01-000334 	gi|15834955|ref|NP_296714.1| ADP, ATP carrier protein [Chlamydia muridarum Nigg]: A-rich region from 435 to 524 corrected with score 45
>CMUR-NIG-01-000353 	gi|15834974|ref|NP_296733.1| hypothetical protein TC0355 [Chlamydia muridarum Nigg]: S-rich region from 2 to 387 corrected with score 89
>CMUR-NIG-01-000353 	gi|15834974|ref|NP_296733.1| hypothetical protein TC0355 [Chlamydia muridarum Nigg]: D-rich region from 526 to 558 corrected with score 45
>CMUR-NIG-01-000362 	gi|15834983|ref|NP_296742.1| type III secreted protein SctW [Chlamydia muridarum Nigg]: S-rich region from 2 to 251 corrected with score 83
>CMUR-NIG-01-000362 	gi|15834983|ref|NP_296742.1| type III secreted protein SctW [Chlamydia muridarum Nigg]: K-rich region from 61 to 90 corrected with score 41
>CMUR-NIG-01-000363 	gi|15834984|ref|NP_296743.1| type III secretion inner membrane protein SctV [Chlamydia muridarum Nigg]: M-rich region from 27 to 91 corrected with score 53
>CMUR-NIG-01-000363 	gi|15834984|ref|NP_296743.1| type III secretion inner membrane protein SctV [Chlamydia muridarum Nigg]: S-rich region from 331 to 363 corrected with score 42
>CMUR-NIG-01-000368 	gi|15834990|ref|NP_296749.1| translation initiation factor IF-2 [Chlamydia muridarum Nigg]: S-rich region from 33 to 290 corrected with score 90
>CMUR-NIG-01-000368 	gi|15834990|ref|NP_296749.1| translation initiation factor IF-2 [Chlamydia muridarum Nigg]: E-rich region from 124 to 160 corrected with score 42
>CMUR-NIG-01-000378 	gi|15835000|ref|NP_296759.1| hypothetical protein TC0381 [Chlamydia muridarum Nigg]: S-rich region from 85 to 249 corrected with score 70
>CMUR-NIG-01-000378 	gi|15835000|ref|NP_296759.1| hypothetical protein TC0381 [Chlamydia muridarum Nigg]: C-rich region from 300 to 341 corrected with score 50
>CMUR-NIG-01-000385 	gi|15835008|ref|NP_296767.1| ATP-dependent Clp protease, subunit B [Chlamydia muridarum Nigg]: E-rich region from 412 to 534 corrected with score 53
>CMUR-NIG-01-000388 	gi|15835011|ref|NP_296770.1| hypothetical protein TC0392 [Chlamydia muridarum Nigg]: P-rich region from 105 to 119 corrected with score 49
>CMUR-NIG-01-000389 	gi|15835012|ref|NP_296771.1| hypothetical protein TC0393 [Chlamydia muridarum Nigg]: A-rich region from 26 to 81 corrected with score 42
>CMUR-NIG-01-000390 	gi|15835013|ref|NP_296772.1| hypothetical protein TC0394 [Chlamydia muridarum Nigg]: S-rich region from 94 to 165 corrected with score 44
>CMUR-NIG-01-000398 	gi|15835021|ref|NP_296780.1| 30S ribosomal protein S9 [Chlamydia muridarum Nigg]: K-rich region from 92 to 133 corrected with score 50
>CMUR-NIG-01-000400 	gi|15835023|ref|NP_296782.1| adenylate kinase [Chlamydia muridarum Nigg]: C-rich region from 237 to 251 corrected with score 52
>CMUR-NIG-01-000403 	gi|15835026|ref|NP_296785.1| hypothetical protein TC0408 [Chlamydia muridarum Nigg]: S-rich region from 270 to 392 corrected with score 43
>CMUR-NIG-01-000413 	gi|15835036|ref|NP_296795.1| hypothetical protein TC0418 [Chlamydia muridarum Nigg]: K-rich region from 82 to 120 corrected with score 40
>CMUR-NIG-01-000419 	gi|15835042|ref|NP_296801.1| hypothetical protein TC0424 [Chlamydia muridarum Nigg]: K-rich region from 962 to 1070 corrected with score 47
>CMUR-NIG-01-000426 	gi|15835049|ref|NP_296808.1| MAC/perforin family protein [Chlamydia muridarum Nigg]: S-rich region from 383 to 549 corrected with score 73
>CMUR-NIG-01-000433 	gi|15835056|ref|NP_296815.1| adherence factor [Chlamydia muridarum Nigg]: E-rich region from 1041 to 1107 corrected with score 59
>CMUR-NIG-01-000433 	gi|15835056|ref|NP_296815.1| adherence factor [Chlamydia muridarum Nigg]: K-rich region from 126 to 292 corrected with score 57
>CMUR-NIG-01-000433 	gi|15835056|ref|NP_296815.1| adherence factor [Chlamydia muridarum Nigg]: K-rich region from 1045 to 1096 corrected with score 40
>CMUR-NIG-01-000434 	gi|15835057|ref|NP_296816.1| adherence factor [Chlamydia muridarum Nigg]: E-rich region from 1009 to 1126 corrected with score 58
>CMUR-NIG-01-000434 	gi|15835057|ref|NP_296816.1| adherence factor [Chlamydia muridarum Nigg]: S-rich region from 11 to 275 corrected with score 52
>CMUR-NIG-01-000466 	gi|15835089|ref|NP_296848.1| peptide ABC transporter, periplasmic peptide-binding protein, putative [Chlamydia muridarum Nigg]: S-rich region from 15 to 41 corrected with score 43
>CMUR-NIG-01-000481 	gi|15835104|ref|NP_296863.1| hypothetical protein TC0486 [Chlamydia muridarum Nigg]: V-rich region from 36 to 101 corrected with score 40
>CMUR-NIG-01-000495 	gi|15835118|ref|NP_296877.1| hypothetical protein TC0500 [Chlamydia muridarum Nigg]: A-rich region from 19 to 72 corrected with score 40
>CMUR-NIG-01-000499 	gi|15835122|ref|NP_296881.1| hypothetical protein TC0504 [Chlamydia muridarum Nigg]: V-rich region from 100 to 163 corrected with score 40
>CMUR-NIG-01-000508 	gi|15835131|ref|NP_296890.1| cationic outer membrane protein OmpH, putative [Chlamydia muridarum Nigg]: E-rich region from 36 to 100 corrected with score 40
>CMUR-NIG-01-000553 	gi|15835176|ref|NP_296935.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Chlamydia muridarum Nigg]: E-rich region from 460 to 517 corrected with score 58
>CMUR-NIG-01-000553 	gi|15835176|ref|NP_296935.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Chlamydia muridarum Nigg]: S-rich region from 169 to 205 corrected with score 53
>CMUR-NIG-01-000555 	gi|15835178|ref|NP_296937.1| hypothetical protein TC0561 [Chlamydia muridarum Nigg]: A-rich region from 31 to 92 corrected with score 44
>CMUR-NIG-01-000556 	gi|15835179|ref|NP_296938.1| hypothetical protein TC0562 [Chlamydia muridarum Nigg]: K-rich region from 86 to 289 corrected with score 69
>CMUR-NIG-01-000556 	gi|15835179|ref|NP_296938.1| hypothetical protein TC0562 [Chlamydia muridarum Nigg]: S-rich region from 243 to 383 corrected with score 40
>CMUR-NIG-01-000567 	gi|15835190|ref|NP_296949.1| hypothetical protein TC0573 [Chlamydia muridarum Nigg]: S-rich region from 4 to 54 corrected with score 52
>CMUR-NIG-01-000584 	gi|15835207|ref|NP_296966.1| 50S ribosomal protein L7/L12 [Chlamydia muridarum Nigg]: A-rich region from 34 to 56 corrected with score 45
>CMUR-NIG-01-000594 	gi|15835217|ref|NP_296976.1| hypothetical protein TC0600 [Chlamydia muridarum Nigg]: S-rich region from 6 to 70 corrected with score 75
>CMUR-NIG-01-000609 	gi|15835232|ref|NP_296991.1| hypothetical protein TC0617 [Chlamydia muridarum Nigg]: L-rich region from 347 to 494 corrected with score 41
>CMUR-NIG-01-000611 	gi|15835234|ref|NP_296993.1| dnaJ protein [Chlamydia muridarum Nigg]: G-rich region from 67 to 134 corrected with score 80
>CMUR-NIG-01-000623 	gi|15835246|ref|NP_297005.1| preprotein translocase subunit SecG [Chlamydia muridarum Nigg]: L-rich region from 1 to 25 corrected with score 41
>CMUR-NIG-01-000629 	gi|15835252|ref|NP_297011.1| hypothetical protein TC0637 [Chlamydia muridarum Nigg]: S-rich region from 3 to 29 corrected with score 47
>CMUR-NIG-01-000631 	gi|15835254|ref|NP_297013.1| hypothetical protein TC0639 [Chlamydia muridarum Nigg]: E-rich region from 150 to 194 corrected with score 48
>CMUR-NIG-01-000636 	gi|15835259|ref|NP_297018.1| hypothetical protein TC0644 [Chlamydia muridarum Nigg]: A-rich region from 41 to 246 corrected with score 46
>CMUR-NIG-01-000637 	gi|15835260|ref|NP_297019.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Chlamydia muridarum Nigg]: S-rich region from 11 to 258 corrected with score 40
>CMUR-NIG-01-000643 	gi|15835266|ref|NP_297025.1| hypothetical protein TC0651 [Chlamydia muridarum Nigg]: H-rich region from 34 to 49 corrected with score 40
>CMUR-NIG-01-000650 	gi|15835273|ref|NP_297032.1| GTP-binding protein HflX [Chlamydia muridarum Nigg]: K-rich region from 182 to 225 corrected with score 47
>CMUR-NIG-01-000663 	gi|15835286|ref|NP_297045.1| hypothetical protein TC0671 [Chlamydia muridarum Nigg]: S-rich region from 2 to 207 corrected with score 47
>CMUR-NIG-01-000667 	gi|15835290|ref|NP_297049.1| molecular chaperone DnaK [Chlamydia muridarum Nigg]: E-rich region from 496 to 580 corrected with score 53
>CMUR-NIG-01-000667 	gi|15835290|ref|NP_297049.1| molecular chaperone DnaK [Chlamydia muridarum Nigg]: S-rich region from 579 to 645 corrected with score 45
>CMUR-NIG-01-000668 	gi|15835291|ref|NP_297050.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg]: K-rich region from 649 to 692 corrected with score 83
>CMUR-NIG-01-000669 	gi|15835292|ref|NP_297051.1| hypothetical protein TC0677 [Chlamydia muridarum Nigg]: E-rich region from 25 to 174 corrected with score 67
>CMUR-NIG-01-000686 	gi|15835309|ref|NP_297068.1| polymorphic membrane protein B/C family protein [Chlamydia muridarum Nigg]: S-rich region from 2 to 1128 corrected with score 360
>CMUR-NIG-01-000686 	gi|15835309|ref|NP_297068.1| polymorphic membrane protein B/C family protein [Chlamydia muridarum Nigg]: T-rich region from 998 to 1064 corrected with score 44
>CMUR-NIG-01-000687 	gi|15835310|ref|NP_297069.1| polymorphic membrane protein B/C family protein [Chlamydia muridarum Nigg]: S-rich region from 5 to 1042 corrected with score 453
>CMUR-NIG-01-000687 	gi|15835310|ref|NP_297069.1| polymorphic membrane protein B/C family protein [Chlamydia muridarum Nigg]: N-rich region from 290 to 330 corrected with score 60
>CMUR-NIG-01-000687 	gi|15835310|ref|NP_297069.1| polymorphic membrane protein B/C family protein [Chlamydia muridarum Nigg]: E-rich region from 72 to 144 corrected with score 45
>CMUR-NIG-01-000687 	gi|15835310|ref|NP_297069.1| polymorphic membrane protein B/C family protein [Chlamydia muridarum Nigg]: T-rich region from 995 to 1040 corrected with score 45
>CMUR-NIG-01-000690 	gi|15835313|ref|NP_297072.1| ABC transporter, permease protein [Chlamydia muridarum Nigg]: L-rich region from 186 to 273 corrected with score 54
>CMUR-NIG-01-000691 	gi|15835314|ref|NP_297073.1| GTPase ObgE [Chlamydia muridarum Nigg]: G-rich region from 31 to 43 corrected with score 43
>CMUR-NIG-01-000705 	gi|15835328|ref|NP_297087.1| hypothetical protein TC0713 [Chlamydia muridarum Nigg]: D-rich region from 294 to 316 corrected with score 68
>CMUR-NIG-01-000713 	gi|15835336|ref|NP_297095.1| elongation factor G [Chlamydia muridarum Nigg]: E-rich region from 197 to 245 corrected with score 42
>CMUR-NIG-01-000715 	gi|15835338|ref|NP_297097.1| 30S ribosomal protein S12 [Chlamydia muridarum Nigg]: K-rich region from 9 to 51 corrected with score 42
>CMUR-NIG-01-000723 	gi|15835346|ref|NP_297105.1| euo protein [Chlamydia muridarum Nigg]: E-rich region from 5 to 24 corrected with score 40
>CMUR-NIG-01-000733 	gi|15835356|ref|NP_297115.1| hypothetical protein TC0741 [Chlamydia muridarum Nigg]: S-rich region from 6 to 1001 corrected with score 311
>CMUR-NIG-01-000733 	gi|15835356|ref|NP_297115.1| hypothetical protein TC0741 [Chlamydia muridarum Nigg]: T-rich region from 2 to 116 corrected with score 79
>CMUR-NIG-01-000733 	gi|15835356|ref|NP_297115.1| hypothetical protein TC0741 [Chlamydia muridarum Nigg]: N-rich region from 425 to 527 corrected with score 55
>CMUR-NIG-01-000733 	gi|15835356|ref|NP_297115.1| hypothetical protein TC0741 [Chlamydia muridarum Nigg]: D-rich region from 596 to 644 corrected with score 40
>CMUR-NIG-01-000761 	gi|15835385|ref|NP_297144.1| hypothetical protein TC0771 [Chlamydia muridarum Nigg]: L-rich region from 20 to 81 corrected with score 46
>CMUR-NIG-01-000780 	gi|15835404|ref|NP_297163.1| hypothetical protein TC0790 [Chlamydia muridarum Nigg]: Q-rich region from 72 to 175 corrected with score 60
>CMUR-NIG-01-000781 	gi|15835405|ref|NP_297164.1| hypothetical protein TC0791 [Chlamydia muridarum Nigg]: K-rich region from 138 to 165 corrected with score 61
>CMUR-NIG-01-000785 	gi|15835409|ref|NP_297168.1| 30S ribosomal protein S11 [Chlamydia muridarum Nigg]: A-rich region from 48 to 107 corrected with score 40
>CMUR-NIG-01-000788 	gi|15835412|ref|NP_297171.1| 50S ribosomal protein L15 [Chlamydia muridarum Nigg]: G-rich region from 21 to 55 corrected with score 42
>CMUR-NIG-01-000806 	gi|15835430|ref|NP_297189.1| hypothetical protein TC0816 [Chlamydia muridarum Nigg]: A-rich region from 46 to 202 corrected with score 51
>CMUR-NIG-01-000821 	gi|15835445|ref|NP_297204.1| GlpT/PgpT/UhpT family protein [Chlamydia muridarum Nigg]: Y-rich region from 27 to 47 corrected with score 40
>CMUR-NIG-01-000838 	gi|15835462|ref|NP_297221.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]: E-rich region from 294 to 327 corrected with score 45
>CMUR-NIG-01-000841 	gi|15835465|ref|NP_297224.1| type III secretion system protein [Chlamydia muridarum Nigg]: L-rich region from 98 to 126 corrected with score 42
>CMUR-NIG-01-000841 	gi|15835465|ref|NP_297224.1| type III secretion system protein [Chlamydia muridarum Nigg]: L-rich region from 254 to 308 corrected with score 40
>CMUR-NIG-01-000851 	gi|15835475|ref|NP_297234.1| general secretion pathway protein D [Chlamydia muridarum Nigg]: S-rich region from 388 to 443 corrected with score 48
>CMUR-NIG-01-000855 	gi|15835479|ref|NP_297238.1| type III secretion chaperone SycD [Chlamydia muridarum Nigg]: K-rich region from 192 to 246 corrected with score 65
>CMUR-NIG-01-000857 	gi|15835481|ref|NP_297240.1| hypothetical protein TC0867 [Chlamydia muridarum Nigg]: S-rich region from 2 to 312 corrected with score 117
>CMUR-NIG-01-000857 	gi|15835481|ref|NP_297240.1| hypothetical protein TC0867 [Chlamydia muridarum Nigg]: A-rich region from 255 to 491 corrected with score 87
>CMUR-NIG-01-000858 	gi|15835482|ref|NP_297241.1| hypothetical protein TC0868 [Chlamydia muridarum Nigg]: S-rich region from 20 to 433 corrected with score 208
>CMUR-NIG-01-000858 	gi|15835482|ref|NP_297241.1| hypothetical protein TC0868 [Chlamydia muridarum Nigg]: A-rich region from 169 to 281 corrected with score 69
>CMUR-NIG-01-000858 	gi|15835482|ref|NP_297241.1| hypothetical protein TC0868 [Chlamydia muridarum Nigg]: Q-rich region from 370 to 411 corrected with score 42
>CMUR-NIG-01-000877 	gi|15835501|ref|NP_297260.1| hypothetical protein TC0887 [Chlamydia muridarum Nigg]: P-rich region from 47 to 109 corrected with score 77
>CMUR-NIG-01-000880 	gi|15835504|ref|NP_297263.1| hypothetical protein TC0890 [Chlamydia muridarum Nigg]: Q-rich region from 35 to 133 corrected with score 52
>CMUR-NIG-01-000896 	gi|15835520|ref|NP_297279.1| hypothetical protein TC0906 [Chlamydia muridarum Nigg]: Q-rich region from 76 to 215 corrected with score 61
>CMUR-NIG-01-000897 	gi|161579043|ref|NP_297280.2| 30S ribosomal protein S20 [Chlamydia muridarum Nigg]: K-rich region from 4 to 45 corrected with score 49
>CMUR-NIG-01-000901 	gi|15835525|ref|NP_297284.1| hypothetical protein TC0911 [Chlamydia muridarum Nigg]: Q-rich region from 27 to 104 corrected with score 52
>CMUR-NIG-01-000910 	gi|15835534|ref|NP_297293.1| hypothetical protein TC0921 [Chlamydia muridarum Nigg]: H-rich region from 274 to 285 corrected with score 42
>CPEC-E58-01-000003 	gi|330443759|ref|YP_004376745.1| hypothetical protein G5S_0004 [Chlamydophila pecorum E58]: Y-rich region from 57 to 69 corrected with score 50
>CPEC-E58-01-000005 	gi|330443761|ref|YP_004376747.1| hypothetical protein G5S_0007 [Chlamydophila pecorum E58]: S-rich region from 6 to 206 corrected with score 74
>CPEC-E58-01-000005 	gi|330443761|ref|YP_004376747.1| hypothetical protein G5S_0007 [Chlamydophila pecorum E58]: E-rich region from 217 to 273 corrected with score 47
>CPEC-E58-01-000007 	gi|330443763|ref|YP_004376749.1| hypothetical protein G5S_0009 [Chlamydophila pecorum E58]: S-rich region from 51 to 167 corrected with score 73
>CPEC-E58-01-000007 	gi|330443763|ref|YP_004376749.1| hypothetical protein G5S_0009 [Chlamydophila pecorum E58]: K-rich region from 174 to 246 corrected with score 57
>CPEC-E58-01-000008 	gi|330443764|ref|YP_004376750.1| hypothetical protein G5S_0010 [Chlamydophila pecorum E58]: S-rich region from 4 to 251 corrected with score 90
>CPEC-E58-01-000008 	gi|330443764|ref|YP_004376750.1| hypothetical protein G5S_0010 [Chlamydophila pecorum E58]: Q-rich region from 124 to 284 corrected with score 67
>CPEC-E58-01-000020 	gi|330443776|ref|YP_004376762.1| hypothetical protein G5S_0023 [Chlamydophila pecorum E58]: Q-rich region from 123 to 371 corrected with score 81
>CPEC-E58-01-000022 	gi|330443778|ref|YP_004376764.1| hypothetical protein G5S_0026 [Chlamydophila pecorum E58]: Q-rich region from 38 to 114 corrected with score 49
>CPEC-E58-01-000023 	gi|330443779|ref|YP_004376765.1| hypothetical protein G5S_0027 [Chlamydophila pecorum E58]: N-rich region from 96 to 147 corrected with score 40
>CPEC-E58-01-000025 	gi|330443781|ref|YP_004376767.1| hypothetical protein G5S_0029 [Chlamydophila pecorum E58]: Q-rich region from 56 to 143 corrected with score 50
>CPEC-E58-01-000031 	gi|330443787|ref|YP_004376773.1| cell division protein FtsH [Chlamydophila pecorum E58]: P-rich region from 887 to 893 corrected with score 49
>CPEC-E58-01-000035 	gi|330443791|ref|YP_004376777.1| hypothetical protein G5S_0039 [Chlamydophila pecorum E58]: E-rich region from 83 to 134 corrected with score 40
>CPEC-E58-01-000056 	gi|330443812|ref|YP_004376798.1| transport permease [Chlamydophila pecorum E58]: I-rich region from 141 to 181 corrected with score 43
>CPEC-E58-01-000064 	gi|330443820|ref|YP_004376806.1| outer membrane protein 11 [Chlamydophila pecorum E58]: S-rich region from 111 to 791 corrected with score 60
>CPEC-E58-01-000087 	gi|330443843|ref|YP_004376829.1| hypothetical protein G5S_0098 [Chlamydophila pecorum E58]: E-rich region from 125 to 157 corrected with score 43
>CPEC-E58-01-000118 	gi|330443874|ref|YP_004376860.1| muramidase [Chlamydophila pecorum E58]: Q-rich region from 75 to 109 corrected with score 44
>CPEC-E58-01-000134 	gi|330443890|ref|YP_004376876.1| histone H1-like protein [Chlamydophila pecorum E58]: K-rich region from 23 to 118 corrected with score 91
>CPEC-E58-01-000135 	gi|330443891|ref|YP_004376877.1| hypothetical protein G5S_0149 [Chlamydophila pecorum E58]: K-rich region from 2 to 27 corrected with score 46
>CPEC-E58-01-000171 	gi|330443927|ref|YP_004376913.1| helicase, swi/snf2 family [Chlamydophila pecorum E58]: E-rich region from 104 to 144 corrected with score 55
>CPEC-E58-01-000172 	gi|330443928|ref|YP_004376914.1| trigger factor [Chlamydophila pecorum E58]: E-rich region from 226 to 274 corrected with score 43
>CPEC-E58-01-000176 	gi|330443932|ref|YP_004376918.1| GTP-binding protein engA [Chlamydophila pecorum E58]: E-rich region from 166 to 211 corrected with score 46
>CPEC-E58-01-000188 	gi|330443944|ref|YP_004376930.1| type III secretion protein SctJ [Chlamydophila pecorum E58]: E-rich region from 296 to 330 corrected with score 43
>CPEC-E58-01-000191 	gi|330443947|ref|YP_004376933.1| YscR/HrcR family type III secretion apparatus protein [Chlamydophila pecorum E58]: M-rich region from 248 to 302 corrected with score 45
>CPEC-E58-01-000191 	gi|330443947|ref|YP_004376933.1| YscR/HrcR family type III secretion apparatus protein [Chlamydophila pecorum E58]: L-rich region from 92 to 120 corrected with score 42
>CPEC-E58-01-000194 	gi|330443950|ref|YP_004376936.1| hypothetical protein G5S_0217 [Chlamydophila pecorum E58]: L-rich region from 104 to 134 corrected with score 42
>CPEC-E58-01-000205 	gi|330443961|ref|YP_004376947.1| type III secretion low calcium response chaperone LcrH/SycD [Chlamydophila pecorum E58]: K-rich region from 183 to 242 corrected with score 74
>CPEC-E58-01-000207 	gi|330443963|ref|YP_004376949.1| hypothetical protein G5S_0231 [Chlamydophila pecorum E58]: A-rich region from 56 to 355 corrected with score 117
>CPEC-E58-01-000208 	gi|330443964|ref|YP_004376950.1| hypothetical protein G5S_0232 [Chlamydophila pecorum E58]: A-rich region from 14 to 435 corrected with score 183
>CPEC-E58-01-000208 	gi|330443964|ref|YP_004376950.1| hypothetical protein G5S_0232 [Chlamydophila pecorum E58]: S-rich region from 56 to 123 corrected with score 61
>CPEC-E58-01-000230 	gi|330443986|ref|YP_004376972.1| hypothetical protein G5S_0257 [Chlamydophila pecorum E58]: P-rich region from 53 to 112 corrected with score 49
>CPEC-E58-01-000246 	gi|330444002|ref|YP_004376988.1| DNA topoisomerase [Chlamydophila pecorum E58]: K-rich region from 749 to 784 corrected with score 48
>CPEC-E58-01-000255 	gi|330444011|ref|YP_004376997.1| hypothetical protein G5S_0285 [Chlamydophila pecorum E58]: Q-rich region from 58 to 199 corrected with score 77
>CPEC-E58-01-000256 	gi|330444012|ref|YP_004376998.1| 30S ribosomal protein S20 [Chlamydophila pecorum E58]: K-rich region from 4 to 95 corrected with score 50
>CPEC-E58-01-000269 	gi|330444025|ref|YP_004377011.1| hypothetical protein G5S_0300 [Chlamydophila pecorum E58]: K-rich region from 101 to 138 corrected with score 55
>CPEC-E58-01-000283 	gi|330444039|ref|YP_004377025.1| hypothetical protein G5S_0315 [Chlamydophila pecorum E58]: S-rich region from 19 to 547 corrected with score 160
>CPEC-E58-01-000283 	gi|330444039|ref|YP_004377025.1| hypothetical protein G5S_0315 [Chlamydophila pecorum E58]: A-rich region from 206 to 464 corrected with score 59
>CPEC-E58-01-000283 	gi|330444039|ref|YP_004377025.1| hypothetical protein G5S_0315 [Chlamydophila pecorum E58]: P-rich region from 76 to 105 corrected with score 51
>CPEC-E58-01-000284 	gi|330444040|ref|YP_004377026.1| hypothetical protein G5S_0316 [Chlamydophila pecorum E58]: Q-rich region from 821 to 851 corrected with score 47
>CPEC-E58-01-000298 	gi|330444054|ref|YP_004377040.1| hypothetical protein G5S_0331 [Chlamydophila pecorum E58]: E-rich region from 115 to 332 corrected with score 167
>CPEC-E58-01-000298 	gi|330444054|ref|YP_004377040.1| hypothetical protein G5S_0331 [Chlamydophila pecorum E58]: S-rich region from 118 to 287 corrected with score 93
>CPEC-E58-01-000298 	gi|330444054|ref|YP_004377040.1| hypothetical protein G5S_0331 [Chlamydophila pecorum E58]: P-rich region from 217 to 273 corrected with score 50
>CPEC-E58-01-000301 	gi|330444057|ref|YP_004377043.1| hypothetical protein G5S_0334 [Chlamydophila pecorum E58]: E-rich region from 65 to 153 corrected with score 43
>CPEC-E58-01-000303 	gi|330444059|ref|YP_004377045.1| hypothetical protein G5S_0336 [Chlamydophila pecorum E58]: E-rich region from 13 to 164 corrected with score 92
>CPEC-E58-01-000304 	gi|330444060|ref|YP_004377046.1| hypothetical protein G5S_0337 [Chlamydophila pecorum E58]: S-rich region from 37 to 151 corrected with score 64
>CPEC-E58-01-000304 	gi|330444060|ref|YP_004377046.1| hypothetical protein G5S_0337 [Chlamydophila pecorum E58]: Q-rich region from 234 to 287 corrected with score 55
>CPEC-E58-01-000304 	gi|330444060|ref|YP_004377046.1| hypothetical protein G5S_0337 [Chlamydophila pecorum E58]: E-rich region from 2 to 92 corrected with score 46
>CPEC-E58-01-000307 	gi|330444063|ref|YP_004377049.1| type III secretion protein SctC [Chlamydophila pecorum E58]: K-rich region from 60 to 232 corrected with score 62
>CPEC-E58-01-000330 	gi|330444086|ref|YP_004377072.1| hypothetical protein G5S_0369 [Chlamydophila pecorum E58]: S-rich region from 19 to 102 corrected with score 83
>CPEC-E58-01-000334 	gi|330444090|ref|YP_004377076.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pecorum E58]: H-rich region from 167 to 182 corrected with score 41
>CPEC-E58-01-000341 	gi|330444097|ref|YP_004377083.1| sugar phosphate sensor protein UhpC [Chlamydophila pecorum E58]: W-rich region from 127 to 162 corrected with score 41
>CPEC-E58-01-000341 	gi|330444097|ref|YP_004377083.1| sugar phosphate sensor protein UhpC [Chlamydophila pecorum E58]: Y-rich region from 27 to 47 corrected with score 40
>CPEC-E58-01-000374 	gi|330444130|ref|YP_004377116.1| 50S ribosomal protein L15 [Chlamydophila pecorum E58]: G-rich region from 21 to 55 corrected with score 42
>CPEC-E58-01-000381 	gi|330444137|ref|YP_004377123.1| hypothetical protein G5S_0422 [Chlamydophila pecorum E58]: S-rich region from 100 to 251 corrected with score 64
>CPEC-E58-01-000381 	gi|330444137|ref|YP_004377123.1| hypothetical protein G5S_0422 [Chlamydophila pecorum E58]: K-rich region from 133 to 166 corrected with score 50
>CPEC-E58-01-000382 	gi|330444138|ref|YP_004377124.1| hypothetical protein G5S_0424 [Chlamydophila pecorum E58]: E-rich region from 66 to 227 corrected with score 91
>CPEC-E58-01-000388 	gi|330444144|ref|YP_004377130.1| replicative DNA helicase [Chlamydophila pecorum E58]: P-rich region from 11 to 21 corrected with score 42
>CPEC-E58-01-000390 	gi|330444146|ref|YP_004377132.1| ADP, ATP carrier protein [Chlamydophila pecorum E58]: I-rich region from 466 to 498 corrected with score 46
>CPEC-E58-01-000419 	gi|330444175|ref|YP_004377161.1| hypothetical protein G5S_0471 [Chlamydophila pecorum E58]: E-rich region from 142 to 655 corrected with score 119
>CPEC-E58-01-000419 	gi|330444175|ref|YP_004377161.1| hypothetical protein G5S_0471 [Chlamydophila pecorum E58]: E-rich region from 715 to 730 corrected with score 42
>CPEC-E58-01-000432 	gi|330444188|ref|YP_004377174.1| hypothetical protein G5S_0486 [Chlamydophila pecorum E58]: S-rich region from 2 to 862 corrected with score 276
>CPEC-E58-01-000432 	gi|330444188|ref|YP_004377174.1| hypothetical protein G5S_0486 [Chlamydophila pecorum E58]: T-rich region from 11 to 56 corrected with score 87
>CPEC-E58-01-000432 	gi|330444188|ref|YP_004377174.1| hypothetical protein G5S_0486 [Chlamydophila pecorum E58]: G-rich region from 520 to 558 corrected with score 72
>CPEC-E58-01-000432 	gi|330444188|ref|YP_004377174.1| hypothetical protein G5S_0486 [Chlamydophila pecorum E58]: P-rich region from 448 to 456 corrected with score 54
>CPEC-E58-01-000432 	gi|330444188|ref|YP_004377174.1| hypothetical protein G5S_0486 [Chlamydophila pecorum E58]: T-rich region from 371 to 402 corrected with score 50
>CPEC-E58-01-000462 	gi|330444218|ref|YP_004377204.1| GTP-binding protein Obg/CgtA [Chlamydophila pecorum E58]: G-rich region from 31 to 43 corrected with score 40
>CPEC-E58-01-000465 	gi|330444221|ref|YP_004377207.1| polymorphic membrane protein B/C family [Chlamydophila pecorum E58]: S-rich region from 5 to 1159 corrected with score 381
>CPEC-E58-01-000465 	gi|330444221|ref|YP_004377207.1| polymorphic membrane protein B/C family [Chlamydophila pecorum E58]: T-rich region from 163 to 218 corrected with score 73
>CPEC-E58-01-000465 	gi|330444221|ref|YP_004377207.1| polymorphic membrane protein B/C family [Chlamydophila pecorum E58]: A-rich region from 428 to 459 corrected with score 43
>CPEC-E58-01-000466 	gi|330444222|ref|YP_004377208.1| hypothetical protein G5S_0529 [Chlamydophila pecorum E58]: K-rich region from 46 to 91 corrected with score 40
>CPEC-E58-01-000482 	gi|330444238|ref|YP_004377224.1| hypothetical protein G5S_0545 [Chlamydophila pecorum E58]: E-rich region from 25 to 174 corrected with score 64
>CPEC-E58-01-000485 	gi|330444241|ref|YP_004377227.1| hypothetical protein G5S_0549 [Chlamydophila pecorum E58]: L-rich region from 25 to 70 corrected with score 40
>CPEC-E58-01-000490 	gi|330444246|ref|YP_004377232.1| hypothetical protein G5S_0554 [Chlamydophila pecorum E58]: D-rich region from 294 to 313 corrected with score 45
>CPEC-E58-01-000491 	gi|330444247|ref|YP_004377233.1| hypothetical protein G5S_0555 [Chlamydophila pecorum E58]: I-rich region from 35 to 81 corrected with score 43
>CPEC-E58-01-000491 	gi|330444247|ref|YP_004377233.1| hypothetical protein G5S_0555 [Chlamydophila pecorum E58]: S-rich region from 414 to 454 corrected with score 40
>CPEC-E58-01-000503 	gi|330444259|ref|YP_004377245.1| hypothetical protein G5S_0568 [Chlamydophila pecorum E58]: K-rich region from 651 to 674 corrected with score 49
>CPEC-E58-01-000503 	gi|330444259|ref|YP_004377245.1| hypothetical protein G5S_0568 [Chlamydophila pecorum E58]: K-rich region from 2 to 19 corrected with score 44
>CPEC-E58-01-000504 	gi|330444260|ref|YP_004377246.1| chaperone protein DnaK [Chlamydophila pecorum E58]: E-rich region from 491 to 567 corrected with score 57
>CPEC-E58-01-000504 	gi|330444260|ref|YP_004377246.1| chaperone protein DnaK [Chlamydophila pecorum E58]: S-rich region from 582 to 643 corrected with score 41
>CPEC-E58-01-000505 	gi|330444261|ref|YP_004377247.1| co-chaperone GrpE [Chlamydophila pecorum E58]: E-rich region from 3 to 60 corrected with score 43
>CPEC-E58-01-000522 	gi|330444278|ref|YP_004377264.1| hypothetical protein G5S_0590 [Chlamydophila pecorum E58]: P-rich region from 67 to 103 corrected with score 56
>CPEC-E58-01-000531 	gi|330444287|ref|YP_004377273.1| hypothetical protein G5S_0604 [Chlamydophila pecorum E58]: S-rich region from 138 to 354 corrected with score 60
>CPEC-E58-01-000532 	gi|330444288|ref|YP_004377274.1| hypothetical protein G5S_0605 [Chlamydophila pecorum E58]: S-rich region from 2 to 445 corrected with score 79
>CPEC-E58-01-000532 	gi|330444288|ref|YP_004377274.1| hypothetical protein G5S_0605 [Chlamydophila pecorum E58]: P-rich region from 395 to 432 corrected with score 52
>CPEC-E58-01-000532 	gi|330444288|ref|YP_004377274.1| hypothetical protein G5S_0605 [Chlamydophila pecorum E58]: P-rich region from 500 to 541 corrected with score 42
>CPEC-E58-01-000533 	gi|330444289|ref|YP_004377275.1| polymorphic outer membrane protein e family [Chlamydophila pecorum E58]: S-rich region from 81 to 551 corrected with score 88
>CPEC-E58-01-000534 	gi|330444290|ref|YP_004377276.1| outer membrane protein 11 [Chlamydophila pecorum E58]: S-rich region from 164 to 335 corrected with score 64
>CPEC-E58-01-000534 	gi|330444290|ref|YP_004377276.1| outer membrane protein 11 [Chlamydophila pecorum E58]: T-rich region from 504 to 649 corrected with score 50
>CPEC-E58-01-000535 	gi|330444291|ref|YP_004377277.1| polymorphic outer membrane protein h family [Chlamydophila pecorum E58]: S-rich region from 18 to 583 corrected with score 104
>CPEC-E58-01-000535 	gi|330444291|ref|YP_004377277.1| polymorphic outer membrane protein h family [Chlamydophila pecorum E58]: P-rich region from 143 to 164 corrected with score 52
>CPEC-E58-01-000536 	gi|330444292|ref|YP_004377278.1| polymorphic membrane protein G family [Chlamydophila pecorum E58]: S-rich region from 43 to 689 corrected with score 170
>CPEC-E58-01-000536 	gi|330444292|ref|YP_004377278.1| polymorphic membrane protein G family [Chlamydophila pecorum E58]: T-rich region from 625 to 688 corrected with score 52
>CPEC-E58-01-000537 	gi|330444293|ref|YP_004377279.1| hypothetical protein G5S_0611 [Chlamydophila pecorum E58]: Q-rich region from 178 to 380 corrected with score 212
>CPEC-E58-01-000537 	gi|330444293|ref|YP_004377279.1| hypothetical protein G5S_0611 [Chlamydophila pecorum E58]: S-rich region from 352 to 440 corrected with score 63
>CPEC-E58-01-000539 	gi|330444295|ref|YP_004377281.1| polymorphic membrane protein G family [Chlamydophila pecorum E58]: S-rich region from 95 to 424 corrected with score 88
>CPEC-E58-01-000540 	gi|330444296|ref|YP_004377282.1| polymorphic outer membrane protein [Chlamydophila pecorum E58]: S-rich region from 14 to 267 corrected with score 48
>CPEC-E58-01-000541 	gi|330444297|ref|YP_004377283.1| outer membrane protein 5 [Chlamydophila pecorum E58]: S-rich region from 20 to 646 corrected with score 292
>CPEC-E58-01-000541 	gi|330444297|ref|YP_004377283.1| outer membrane protein 5 [Chlamydophila pecorum E58]: G-rich region from 281 to 345 corrected with score 55
>CPEC-E58-01-000541 	gi|330444297|ref|YP_004377283.1| outer membrane protein 5 [Chlamydophila pecorum E58]: T-rich region from 38 to 72 corrected with score 43
>CPEC-E58-01-000541 	gi|330444297|ref|YP_004377283.1| outer membrane protein 5 [Chlamydophila pecorum E58]: T-rich region from 508 to 532 corrected with score 42
>CPEC-E58-01-000543 	gi|330444299|ref|YP_004377285.1| outer membrane protein 5 [Chlamydophila pecorum E58]: S-rich region from 11 to 514 corrected with score 203
>CPEC-E58-01-000544 	gi|330444300|ref|YP_004377286.1| polymorphic membrane protein G family [Chlamydophila pecorum E58]: S-rich region from 12 to 639 corrected with score 167
>CPEC-E58-01-000546 	gi|330444302|ref|YP_004377288.1| polymorphic outer membrane protein g family [Chlamydophila pecorum E58]: S-rich region from 5 to 534 corrected with score 191
>CPEC-E58-01-000547 	gi|330444303|ref|YP_004377289.1| polymorphic outer membrane protein g/i family [Chlamydophila pecorum E58]: S-rich region from 10 to 1145 corrected with score 421
>CPEC-E58-01-000547 	gi|330444303|ref|YP_004377289.1| polymorphic outer membrane protein g/i family [Chlamydophila pecorum E58]: T-rich region from 108 to 228 corrected with score 316
>CPEC-E58-01-000547 	gi|330444303|ref|YP_004377289.1| polymorphic outer membrane protein g/i family [Chlamydophila pecorum E58]: Q-rich region from 230 to 281 corrected with score 103
>CPEC-E58-01-000547 	gi|330444303|ref|YP_004377289.1| polymorphic outer membrane protein g/i family [Chlamydophila pecorum E58]: E-rich region from 328 to 530 corrected with score 53
>CPEC-E58-01-000547 	gi|330444303|ref|YP_004377289.1| polymorphic outer membrane protein g/i family [Chlamydophila pecorum E58]: A-rich region from 895 to 987 corrected with score 42
>CPEC-E58-01-000547 	gi|330444303|ref|YP_004377289.1| polymorphic outer membrane protein g/i family [Chlamydophila pecorum E58]: N-rich region from 346 to 463 corrected with score 40
>CPEC-E58-01-000552 	gi|330444308|ref|YP_004377294.1| hypothetical protein G5S_0630 [Chlamydophila pecorum E58]: F-rich region from 14 to 31 corrected with score 44
>CPEC-E58-01-000553 	gi|330444309|ref|YP_004377295.1| hypothetical protein G5S_0631 [Chlamydophila pecorum E58]: S-rich region from 164 to 375 corrected with score 80
>CPEC-E58-01-000553 	gi|330444309|ref|YP_004377295.1| hypothetical protein G5S_0631 [Chlamydophila pecorum E58]: K-rich region from 344 to 380 corrected with score 63
>CPEC-E58-01-000558 	gi|330444314|ref|YP_004377300.1| hypothetical protein G5S_0636 [Chlamydophila pecorum E58]: C-rich region from 99 to 118 corrected with score 46
>CPEC-E58-01-000578 	gi|330444334|ref|YP_004377320.1| hypothetical protein G5S_0663 [Chlamydophila pecorum E58]: S-rich region from 64 to 179 corrected with score 155
>CPEC-E58-01-000580 	gi|330444336|ref|YP_004377322.1| hypothetical protein G5S_0665 [Chlamydophila pecorum E58]: K-rich region from 6 to 73 corrected with score 50
>CPEC-E58-01-000583 	gi|330444339|ref|YP_004377325.1| chaperone protein DnaJ [Chlamydophila pecorum E58]: G-rich region from 67 to 133 corrected with score 61
>CPEC-E58-01-000585 	gi|330444341|ref|YP_004377327.1| hypothetical protein G5S_0670 [Chlamydophila pecorum E58]: P-rich region from 3 to 24 corrected with score 49
>CPEC-E58-01-000585 	gi|330444341|ref|YP_004377327.1| hypothetical protein G5S_0670 [Chlamydophila pecorum E58]: P-rich region from 84 to 121 corrected with score 49
>CPEC-E58-01-000586 	gi|330444342|ref|YP_004377328.1| Competence protein family [Chlamydophila pecorum E58]: L-rich region from 322 to 428 corrected with score 42
>CPEC-E58-01-000591 	gi|330444347|ref|YP_004377333.1| DNA polymerase III subunit gamma [Chlamydophila pecorum E58]: P-rich region from 358 to 384 corrected with score 71
>CPEC-E58-01-000602 	gi|330444358|ref|YP_004377344.1| hypothetical protein G5S_0688 [Chlamydophila pecorum E58]: S-rich region from 26 to 354 corrected with score 63
>CPEC-E58-01-000602 	gi|330444358|ref|YP_004377344.1| hypothetical protein G5S_0688 [Chlamydophila pecorum E58]: K-rich region from 177 to 258 corrected with score 41
>CPEC-E58-01-000603 	gi|330444359|ref|YP_004377345.1| hypothetical protein G5S_0689 [Chlamydophila pecorum E58]: V-rich region from 292 to 338 corrected with score 43
>CPEC-E58-01-000604 	gi|330444360|ref|YP_004377346.1| hypothetical protein G5S_0690 [Chlamydophila pecorum E58]: P-rich region from 157 to 292 corrected with score 144
>CPEC-E58-01-000604 	gi|330444360|ref|YP_004377346.1| hypothetical protein G5S_0690 [Chlamydophila pecorum E58]: K-rich region from 133 to 262 corrected with score 108
>CPEC-E58-01-000604 	gi|330444360|ref|YP_004377346.1| hypothetical protein G5S_0690 [Chlamydophila pecorum E58]: S-rich region from 148 to 326 corrected with score 72
>CPEC-E58-01-000604 	gi|330444360|ref|YP_004377346.1| hypothetical protein G5S_0690 [Chlamydophila pecorum E58]: D-rich region from 326 to 342 corrected with score 40
>CPEC-E58-01-000608 	gi|330444364|ref|YP_004377350.1| endopeptidase Clp ATP-binding chain clpC [Chlamydophila pecorum E58]: S-rich region from 153 to 186 corrected with score 59
>CPEC-E58-01-000608 	gi|330444364|ref|YP_004377350.1| endopeptidase Clp ATP-binding chain clpC [Chlamydophila pecorum E58]: E-rich region from 441 to 498 corrected with score 47
>CPEC-E58-01-000622 	gi|330444378|ref|YP_004377364.1| hypothetical protein G5S_0709 [Chlamydophila pecorum E58]: E-rich region from 126 to 149 corrected with score 50
>CPEC-E58-01-000641 	gi|330444397|ref|YP_004377383.1| hypothetical protein G5S_0729 [Chlamydophila pecorum E58]: S-rich region from 2 to 197 corrected with score 109
>CPEC-E58-01-000645 	gi|330444401|ref|YP_004377387.1| hypothetical protein G5S_0733 [Chlamydophila pecorum E58]: S-rich region from 2 to 164 corrected with score 50
>CPEC-E58-01-000645 	gi|330444401|ref|YP_004377387.1| hypothetical protein G5S_0733 [Chlamydophila pecorum E58]: S-rich region from 497 to 571 corrected with score 49
>CPEC-E58-01-000665 	gi|330444421|ref|YP_004377407.1| histone H1-like protein HC2 [Chlamydophila pecorum E58]: K-rich region from 5 to 175 corrected with score 126
>CPEC-E58-01-000665 	gi|330444421|ref|YP_004377407.1| histone H1-like protein HC2 [Chlamydophila pecorum E58]: A-rich region from 12 to 177 corrected with score 86
>CPEC-E58-01-000669 	gi|330444425|ref|YP_004377411.1| hypothetical protein G5S_0760 [Chlamydophila pecorum E58]: E-rich region from 27 to 128 corrected with score 52
>CPEC-E58-01-000675 	gi|330444431|ref|YP_004377417.1| hypothetical protein G5S_0766 [Chlamydophila pecorum E58]: P-rich region from 98 to 134 corrected with score 47
>CPEC-E58-01-000685 	gi|330444441|ref|YP_004377427.1| GTP-binding protein LepA [Chlamydophila pecorum E58]: K-rich region from 568 to 588 corrected with score 41
>CPEC-E58-01-000687 	gi|330444443|ref|YP_004377429.1| hypothetical protein G5S_0781 [Chlamydophila pecorum E58]: V-rich region from 25 to 72 corrected with score 45
>CPEC-E58-01-000705 	gi|330444461|ref|YP_004377447.1| Late transcription unit B protein [Chlamydophila pecorum E58]: K-rich region from 5 to 56 corrected with score 67
>CPEC-E58-01-000706 	gi|330444462|ref|YP_004377448.1| hypothetical protein G5S_0801 [Chlamydophila pecorum E58]: F-rich region from 11 to 48 corrected with score 52
>CPEC-E58-01-000707 	gi|330444463|ref|YP_004377449.1| hypothetical protein G5S_0802 [Chlamydophila pecorum E58]: S-rich region from 2 to 482 corrected with score 200
>CPEC-E58-01-000708 	gi|330444464|ref|YP_004377450.1| hypothetical protein G5S_0803 [Chlamydophila pecorum E58]: K-rich region from 53 to 126 corrected with score 65
>CPEC-E58-01-000716 	gi|330444472|ref|YP_004377458.1| hypothetical protein G5S_0811 [Chlamydophila pecorum E58]: S-rich region from 2 to 156 corrected with score 57
>CPEC-E58-01-000717 	gi|330444473|ref|YP_004377459.1| type III secretion protein, HrcV family [Chlamydophila pecorum E58]: L-rich region from 27 to 91 corrected with score 57
>CPEC-E58-01-000723 	gi|330444479|ref|YP_004377465.1| translation initiation factor IF-2 [Chlamydophila pecorum E58]: S-rich region from 33 to 228 corrected with score 85
>CPEC-E58-01-000723 	gi|330444479|ref|YP_004377465.1| translation initiation factor IF-2 [Chlamydophila pecorum E58]: K-rich region from 178 to 283 corrected with score 45
>CPEC-E58-01-000730 	gi|330444486|ref|YP_004377472.1| 60 kDa inner membrane protein [Chlamydophila pecorum E58]: Q-rich region from 633 to 653 corrected with score 45
>CPEC-E58-01-000739 	gi|330444495|ref|YP_004377481.1| OmpH-like protein [Chlamydophila pecorum E58]: E-rich region from 33 to 144 corrected with score 58
>CPEC-E58-01-000750 	gi|330444506|ref|YP_004377492.1| inclusion membrane protein C [Chlamydophila pecorum E58]: V-rich region from 109 to 175 corrected with score 44
>CPEC-E58-01-000751 	gi|330444507|ref|YP_004377493.1| inclusion membrane protein B [Chlamydophila pecorum E58]: A-rich region from 41 to 91 corrected with score 48
>CPEC-E58-01-000759 	gi|330444515|ref|YP_004377501.1| amino acid antiporter [Chlamydophila pecorum E58]: W-rich region from 81 to 98 corrected with score 40
>CPEC-E58-01-000776 	gi|330444532|ref|YP_004377518.1| hypothetical protein G5S_0872 [Chlamydophila pecorum E58]: Q-rich region from 219 to 291 corrected with score 42
>CPEC-E58-01-000776 	gi|330444532|ref|YP_004377518.1| hypothetical protein G5S_0872 [Chlamydophila pecorum E58]: V-rich region from 34 to 90 corrected with score 40
>CPEC-E58-01-000782 	gi|330444538|ref|YP_004377524.1| protein translocase subunit [Chlamydophila pecorum E58]: K-rich region from 15 to 138 corrected with score 59
>CPEC-E58-01-000784 	gi|330444540|ref|YP_004377526.1| hypothetical protein G5S_0886 [Chlamydophila pecorum E58]: S-rich region from 22 to 89 corrected with score 41
>CPEC-E58-01-000793 	gi|330444549|ref|YP_004377535.1| 30S ribosomal protein S9 [Chlamydophila pecorum E58]: K-rich region from 92 to 133 corrected with score 43
>CPEC-E58-01-000798 	gi|330444554|ref|YP_004377540.1| hypothetical protein G5S_0900 [Chlamydophila pecorum E58]: A-rich region from 172 to 260 corrected with score 53
>CPEC-E58-01-000798 	gi|330444554|ref|YP_004377540.1| hypothetical protein G5S_0900 [Chlamydophila pecorum E58]: P-rich region from 364 to 381 corrected with score 48
>CPEC-E58-01-000807 	gi|330444563|ref|YP_004377549.1| hypothetical protein G5S_0911 [Chlamydophila pecorum E58]: E-rich region from 183 to 205 corrected with score 49
>CPEC-E58-01-000818 	gi|330444574|ref|YP_004377560.1| hypothetical protein G5S_0925 [Chlamydophila pecorum E58]: I-rich region from 33 to 82 corrected with score 43
>CPEC-E58-01-000824 	gi|330444580|ref|YP_004377566.1| phospholipase D family protein [Chlamydophila pecorum E58]: R-rich region from 22 to 92 corrected with score 72
>CPEC-E58-01-000824 	gi|330444580|ref|YP_004377566.1| phospholipase D family protein [Chlamydophila pecorum E58]: H-rich region from 48 to 100 corrected with score 52
>CPEC-E58-01-000827 	gi|330444583|ref|YP_004377569.1| glycosyltransferase sugar-binding domain-containing protein [Chlamydophila pecorum E58]: K-rich region from 645 to 731 corrected with score 89
>CPEC-E58-01-000827 	gi|330444583|ref|YP_004377569.1| glycosyltransferase sugar-binding domain-containing protein [Chlamydophila pecorum E58]: K-rich region from 151 to 229 corrected with score 50
>CPEC-E58-01-000827 	gi|330444583|ref|YP_004377569.1| glycosyltransferase sugar-binding domain-containing protein [Chlamydophila pecorum E58]: E-rich region from 679 to 726 corrected with score 44
>CPEC-E58-01-000828 	gi|330444584|ref|YP_004377570.1| phospholipase D family protein [Chlamydophila pecorum E58]: H-rich region from 16 to 75 corrected with score 84
>CPEC-E58-01-000834 	gi|330444590|ref|YP_004377576.1| glycosyltransferase sugar-binding domain-containing protein [Chlamydophila pecorum E58]: K-rich region from 197 to 348 corrected with score 81
>CPEC-E58-01-000834 	gi|330444590|ref|YP_004377576.1| glycosyltransferase sugar-binding domain-containing protein [Chlamydophila pecorum E58]: K-rich region from 1118 to 1172 corrected with score 67
>CPEC-E58-01-000834 	gi|330444590|ref|YP_004377576.1| glycosyltransferase sugar-binding domain-containing protein [Chlamydophila pecorum E58]: K-rich region from 613 to 736 corrected with score 63
>CPEC-E58-01-000834 	gi|330444590|ref|YP_004377576.1| glycosyltransferase sugar-binding domain-containing protein [Chlamydophila pecorum E58]: K-rich region from 1243 to 1290 corrected with score 44
>CPEC-E58-01-000835 	gi|330444591|ref|YP_004377577.1| phospholipase D family protein [Chlamydophila pecorum E58]: S-rich region from 2 to 90 corrected with score 57
>CPEC-E58-01-000844 	gi|330444600|ref|YP_004377586.1| inclusion membrane protein A [Chlamydophila pecorum E58]: A-rich region from 253 to 312 corrected with score 106
>CPEC-E58-01-000844 	gi|330444600|ref|YP_004377586.1| inclusion membrane protein A [Chlamydophila pecorum E58]: Q-rich region from 213 to 263 corrected with score 97
>CPEC-E58-01-000844 	gi|330444600|ref|YP_004377586.1| inclusion membrane protein A [Chlamydophila pecorum E58]: P-rich region from 278 to 313 corrected with score 45
>CPEC-E58-01-000853 	gi|330444609|ref|YP_004377595.1| oligopeptide binding protein [Chlamydophila pecorum E58]: H-rich region from 223 to 240 corrected with score 40
>CPEC-E58-01-000856 	gi|330444612|ref|YP_004377598.1| peptide ABC transporter periplasmic binding protein [Chlamydophila pecorum E58]: Q-rich region from 369 to 429 corrected with score 45
>CPEC-E58-01-000872 	gi|330444628|ref|YP_004377614.1| hypothetical protein G5S_0992 [Chlamydophila pecorum E58]: E-rich region from 969 to 1041 corrected with score 40
>CPEC-E58-01-000876 	gi|330444632|ref|YP_004377618.1| hypothetical protein G5S_0996 [Chlamydophila pecorum E58]: G-rich region from 43 to 94 corrected with score 72
>CPEC-E58-01-000883 	gi|330444639|ref|YP_004377625.1| ATP-dependent Clp protease subunit B [Chlamydophila pecorum E58]: E-rich region from 412 to 534 corrected with score 64
>CPEC-E58-01-000898 	gi|330444654|ref|YP_004377640.1| hypothetical protein G5S_1020 [Chlamydophila pecorum E58]: I-rich region from 30 to 81 corrected with score 54
>CPEC-E58-01-000909 	gi|330444665|ref|YP_004377651.1| 30S ribosomal protein [Chlamydophila pecorum E58]: R-rich region from 87 to 110 corrected with score 40
>CPEC-E58-01-000913 	gi|330444669|ref|YP_004377655.1| peptide chain release factor 1 [Chlamydophila pecorum E58]: E-rich region from 15 to 92 corrected with score 41
>CPEC-E58-01-000939 	gi|330444695|ref|YP_004377681.1| hypothetical protein G5S_1062 [Chlamydophila pecorum E58]: K-rich region from 22 to 73 corrected with score 54
>CPEC-E58-01-000944 	gi|330444700|ref|YP_004377686.1| hypothetical protein G5S_1067 [Chlamydophila pecorum E58]: A-rich region from 58 to 151 corrected with score 53
>CPEC-E58-01-000945 	gi|330444701|ref|YP_004377687.1| 50S ribosomal protein L7/L12 [Chlamydophila pecorum E58]: A-rich region from 34 to 57 corrected with score 44
>CPEC-E58-01-000964 	gi|330444720|ref|YP_004377706.1| polymorphic outer membrane protein [Chlamydophila pecorum E58]: S-rich region from 30 to 632 corrected with score 208
>CPEC-E58-01-000964 	gi|330444720|ref|YP_004377706.1| polymorphic outer membrane protein [Chlamydophila pecorum E58]: G-rich region from 264 to 293 corrected with score 46
>CPEC-E58-01-000964 	gi|330444720|ref|YP_004377706.1| polymorphic outer membrane protein [Chlamydophila pecorum E58]: T-rich region from 368 to 558 corrected with score 44
>CPEC-E58-01-000981 	gi|330444737|ref|YP_004377724.1| 3-dehydroquinate dehydratase/shikimate 5-dehydrogenase [Chlamydophila pecorum E58]: H-rich region from 113 to 136 corrected with score 44
>CPEC-E58-01-000983 	gi|330444739|ref|YP_004377726.1| hypothetical protein G5S_1110 [Chlamydophila pecorum E58]: H-rich region from 29 to 50 corrected with score 49
>CPNE-AR3-01-000002 	gi|16752299|ref|NP_444556.1| hypothetical protein CP0003 [Chlamydophila pneumoniae AR39]: K-rich region from 119 to 138 corrected with score 45
>CPNE-AR3-01-000016 	gi|16752312|ref|NP_444570.1| hypothetical protein CP0018 [Chlamydophila pneumoniae AR39]: S-rich region from 22 to 632 corrected with score 136
>CPNE-AR3-01-000016 	gi|16752312|ref|NP_444570.1| hypothetical protein CP0018 [Chlamydophila pneumoniae AR39]: A-rich region from 391 to 457 corrected with score 73
>CPNE-AR3-01-000017 	gi|16752313|ref|NP_444571.1| hypothetical protein CP0019 [Chlamydophila pneumoniae AR39]: Q-rich region from 818 to 847 corrected with score 45
>CPNE-AR3-01-000018 	gi|16752314|ref|NP_444572.1| hypothetical protein CP0020 [Chlamydophila pneumoniae AR39]: S-rich region from 317 to 456 corrected with score 41
>CPNE-AR3-01-000032 	gi|16752328|ref|NP_444586.1| hypothetical protein CP0034 [Chlamydophila pneumoniae AR39]: E-rich region from 114 to 359 corrected with score 168
>CPNE-AR3-01-000032 	gi|16752328|ref|NP_444586.1| hypothetical protein CP0034 [Chlamydophila pneumoniae AR39]: S-rich region from 118 to 363 corrected with score 54
>CPNE-AR3-01-000032 	gi|16752328|ref|NP_444586.1| hypothetical protein CP0034 [Chlamydophila pneumoniae AR39]: E-rich region from 518 to 539 corrected with score 43
>CPNE-AR3-01-000038 	gi|16752334|ref|NP_444592.1| hypothetical protein CP0040 [Chlamydophila pneumoniae AR39]: E-rich region from 13 to 149 corrected with score 97
>CPNE-AR3-01-000039 	gi|16752335|ref|NP_444593.1| hypothetical protein CP0041 [Chlamydophila pneumoniae AR39]: E-rich region from 22 to 87 corrected with score 57
>CPNE-AR3-01-000039 	gi|16752335|ref|NP_444593.1| hypothetical protein CP0041 [Chlamydophila pneumoniae AR39]: E-rich region from 249 to 277 corrected with score 47
>CPNE-AR3-01-000042 	gi|16752338|ref|NP_444596.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]: K-rich region from 52 to 252 corrected with score 43
>CPNE-AR3-01-000042 	gi|16752338|ref|NP_444596.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]: T-rich region from 732 to 802 corrected with score 40
>CPNE-AR3-01-000048 	gi|16752344|ref|NP_444602.1| 30S ribosomal protein S2 [Chlamydophila pneumoniae AR39]: E-rich region from 251 to 266 corrected with score 40
>CPNE-AR3-01-000052 	gi|16752348|ref|NP_444606.1| cysteine desulfurase activator complex subunit SufB [Chlamydophila pneumoniae AR39]: S-rich region from 334 to 428 corrected with score 41
>CPNE-AR3-01-000067 	gi|16752363|ref|NP_444621.1| hypothetical protein CP0069 [Chlamydophila pneumoniae AR39]: P-rich region from 137 to 189 corrected with score 52
>CPNE-AR3-01-000068 	gi|16752364|ref|NP_444622.1| hypothetical protein CP0070 [Chlamydophila pneumoniae AR39]: S-rich region from 18 to 159 corrected with score 65
>CPNE-AR3-01-000068 	gi|16752364|ref|NP_444622.1| hypothetical protein CP0070 [Chlamydophila pneumoniae AR39]: P-rich region from 80 to 122 corrected with score 45
>CPNE-AR3-01-000073 	gi|16752369|ref|NP_444627.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pneumoniae AR39]: H-rich region from 172 to 187 corrected with score 41
>CPNE-AR3-01-000080 	gi|16752375|ref|NP_444634.1| GlpT/PgpT/UhpT family protein [Chlamydophila pneumoniae AR39]: W-rich region from 127 to 139 corrected with score 40
>CPNE-AR3-01-000080 	gi|16752375|ref|NP_444634.1| GlpT/PgpT/UhpT family protein [Chlamydophila pneumoniae AR39]: Y-rich region from 27 to 47 corrected with score 40
>CPNE-AR3-01-000115 	gi|16752410|ref|NP_444669.1| 50S ribosomal protein L15 [Chlamydophila pneumoniae AR39]: G-rich region from 21 to 55 corrected with score 42
>CPNE-AR3-01-000116 	gi|161353774|ref|NP_444670.2| preprotein translocase subunit SecY [Chlamydophila pneumoniae AR39]: I-rich region from 230 to 251 corrected with score 44
>CPNE-AR3-01-000122 	gi|16752417|ref|NP_444676.1| hypothetical protein CP0124 [Chlamydophila pneumoniae AR39]: E-rich region from 109 to 191 corrected with score 66
>CPNE-AR3-01-000122 	gi|16752417|ref|NP_444676.1| hypothetical protein CP0124 [Chlamydophila pneumoniae AR39]: K-rich region from 127 to 157 corrected with score 51
>CPNE-AR3-01-000123 	gi|16752418|ref|NP_444677.1| hypothetical protein CP0125 [Chlamydophila pneumoniae AR39]: Q-rich region from 69 to 241 corrected with score 82
>CPNE-AR3-01-000131 	gi|16752426|ref|NP_444685.1| ADP, ATP carrier protein [Chlamydophila pneumoniae AR39]: I-rich region from 467 to 499 corrected with score 43
>CPNE-AR3-01-000145 	gi|16753079|ref|NP_444699.1| hypothetical protein CP0147 [Chlamydophila pneumoniae AR39]: E-rich region from 30 to 65 corrected with score 56
>CPNE-AR3-01-000161 	gi|16752453|ref|NP_444715.1| hypothetical protein CP0163 [Chlamydophila pneumoniae AR39]: Q-rich region from 226 to 650 corrected with score 146
>CPNE-AR3-01-000161 	gi|16752453|ref|NP_444715.1| hypothetical protein CP0163 [Chlamydophila pneumoniae AR39]: E-rich region from 377 to 580 corrected with score 46
>CPNE-AR3-01-000174 	gi|16752466|ref|NP_444728.1| hypothetical protein CP0177 [Chlamydophila pneumoniae AR39]: S-rich region from 6 to 751 corrected with score 229
>CPNE-AR3-01-000174 	gi|16752466|ref|NP_444728.1| hypothetical protein CP0177 [Chlamydophila pneumoniae AR39]: T-rich region from 554 to 664 corrected with score 111
>CPNE-AR3-01-000174 	gi|16752466|ref|NP_444728.1| hypothetical protein CP0177 [Chlamydophila pneumoniae AR39]: T-rich region from 9 to 50 corrected with score 61
>CPNE-AR3-01-000174 	gi|16752466|ref|NP_444728.1| hypothetical protein CP0177 [Chlamydophila pneumoniae AR39]: P-rich region from 449 to 461 corrected with score 48
>CPNE-AR3-01-000183 	gi|16752475|ref|NP_444737.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila pneumoniae AR39]: S-rich region from 136 to 244 corrected with score 48
>CPNE-AR3-01-000197 	gi|16752489|ref|NP_444751.1| 30S ribosomal protein S12 [Chlamydophila pneumoniae AR39]: K-rich region from 9 to 51 corrected with score 41
>CPNE-AR3-01-000205 	gi|161353773|ref|NP_444759.2| GTPase ObgE [Chlamydophila pneumoniae AR39]: G-rich region from 31 to 43 corrected with score 43
>CPNE-AR3-01-000206 	gi|16752498|ref|NP_444760.1| ABC transporter, permease protein [Chlamydophila pneumoniae AR39]: L-rich region from 183 to 239 corrected with score 51
>CPNE-AR3-01-000209 	gi|16752501|ref|NP_444763.1| polymorphic membrane protein B/C family protein [Chlamydophila pneumoniae AR39]: S-rich region from 33 to 1279 corrected with score 354
>CPNE-AR3-01-000209 	gi|16752501|ref|NP_444763.1| polymorphic membrane protein B/C family protein [Chlamydophila pneumoniae AR39]: A-rich region from 538 to 579 corrected with score 43
>CPNE-AR3-01-000222 	gi|16752514|ref|NP_444776.1| branched-chain alpha-keto acid dehydrogenase subunit E2 [Chlamydophila pneumoniae AR39]: S-rich region from 82 to 108 corrected with score 40
>CPNE-AR3-01-000225 	gi|16752517|ref|NP_444779.1| hypothetical protein CP0228 [Chlamydophila pneumoniae AR39]: E-rich region from 25 to 174 corrected with score 56
>CPNE-AR3-01-000233 	gi|16752525|ref|NP_444787.1| hypothetical protein CP0236 [Chlamydophila pneumoniae AR39]: I-rich region from 40 to 88 corrected with score 41
>CPNE-AR3-01-000234 	gi|16752526|ref|NP_444788.1| hypothetical protein CP0237 [Chlamydophila pneumoniae AR39]: T-rich region from 154 to 207 corrected with score 43
>CPNE-AR3-01-000246 	gi|16752538|ref|NP_444800.1| VacB/Rnb family exoribonuclease [Chlamydophila pneumoniae AR39]: K-rich region from 655 to 674 corrected with score 43
>CPNE-AR3-01-000248 	gi|16752540|ref|NP_444802.1| molecular chaperone DnaK [Chlamydophila pneumoniae AR39]: E-rich region from 493 to 660 corrected with score 64
>CPNE-AR3-01-000248 	gi|16752540|ref|NP_444802.1| molecular chaperone DnaK [Chlamydophila pneumoniae AR39]: S-rich region from 599 to 643 corrected with score 46
>CPNE-AR3-01-000249 	gi|16752541|ref|NP_444803.1| heat shock protein GrpE, putative [Chlamydophila pneumoniae AR39]: E-rich region from 7 to 63 corrected with score 55
>CPNE-AR3-01-000252 	gi|16752544|ref|NP_444806.1| hypothetical protein CP0255 [Chlamydophila pneumoniae AR39]: E-rich region from 316 to 384 corrected with score 55
>CPNE-AR3-01-000252 	gi|16752544|ref|NP_444806.1| hypothetical protein CP0255 [Chlamydophila pneumoniae AR39]: S-rich region from 2 to 86 corrected with score 46
>CPNE-AR3-01-000268 	gi|16752560|ref|NP_444822.1| hypothetical protein CP0271 [Chlamydophila pneumoniae AR39]: P-rich region from 67 to 154 corrected with score 174
>CPNE-AR3-01-000276 	gi|16752568|ref|NP_444830.1| hypothetical protein CP0280 [Chlamydophila pneumoniae AR39]: V-rich region from 57 to 94 corrected with score 43
>CPNE-AR3-01-000277 	gi|16752569|ref|NP_444831.1| hypothetical protein CP0281 [Chlamydophila pneumoniae AR39]: S-rich region from 7 to 487 corrected with score 109
>CPNE-AR3-01-000278 	gi|16752570|ref|NP_444832.1| hypothetical protein CP0282 [Chlamydophila pneumoniae AR39]: S-rich region from 2 to 637 corrected with score 119
>CPNE-AR3-01-000279 	gi|16752571|ref|NP_444833.1| polymorphic membrane protein E/F family protein [Chlamydophila pneumoniae AR39]: S-rich region from 672 to 800 corrected with score 54
>CPNE-AR3-01-000280 	gi|16752572|ref|NP_444834.1| polymorphic membrane protein E/F family protein [Chlamydophila pneumoniae AR39]: N-rich region from 147 to 306 corrected with score 60
>CPNE-AR3-01-000281 	gi|16752573|ref|NP_444835.1| polymorphic membrane protein E/F family protein [Chlamydophila pneumoniae AR39]: S-rich region from 97 to 351 corrected with score 52
>CPNE-AR3-01-000281 	gi|16752573|ref|NP_444835.1| polymorphic membrane protein E/F family protein [Chlamydophila pneumoniae AR39]: T-rich region from 467 to 534 corrected with score 48
>CPNE-AR3-01-000293 	gi|16752585|ref|NP_444847.1| polymorphic membrane protein H family protein [Chlamydophila pneumoniae AR39]: S-rich region from 46 to 458 corrected with score 85
>CPNE-AR3-01-000294 	gi|16752586|ref|NP_444848.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: S-rich region from 86 to 512 corrected with score 94
>CPNE-AR3-01-000294 	gi|16752586|ref|NP_444848.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: P-rich region from 317 to 348 corrected with score 55
>CPNE-AR3-01-000294 	gi|16752586|ref|NP_444848.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: T-rich region from 497 to 671 corrected with score 50
>CPNE-AR3-01-000297 	gi|16752589|ref|NP_444851.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: S-rich region from 10 to 523 corrected with score 138
>CPNE-AR3-01-000298 	gi|16752590|ref|NP_444852.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: S-rich region from 11 to 517 corrected with score 154
>CPNE-AR3-01-000298 	gi|16752590|ref|NP_444852.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: T-rich region from 550 to 598 corrected with score 51
>CPNE-AR3-01-000301 	gi|16752593|ref|NP_444855.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: S-rich region from 11 to 527 corrected with score 150
>CPNE-AR3-01-000302 	gi|16752594|ref|NP_444856.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: S-rich region from 21 to 555 corrected with score 180
>CPNE-AR3-01-000303 	gi|16752595|ref|NP_444857.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: S-rich region from 2 to 593 corrected with score 129
>CPNE-AR3-01-000304 	gi|16752596|ref|NP_444858.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: S-rich region from 10 to 680 corrected with score 268
>CPNE-AR3-01-000304 	gi|16752596|ref|NP_444858.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: T-rich region from 45 to 549 corrected with score 104
>CPNE-AR3-01-000304 	gi|16752596|ref|NP_444858.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: P-rich region from 731 to 753 corrected with score 40
>CPNE-AR3-01-000305 	gi|16752597|ref|NP_444859.1| hypothetical protein CP0310 [Chlamydophila pneumoniae AR39]: S-rich region from 195 to 404 corrected with score 77
>CPNE-AR3-01-000305 	gi|16752597|ref|NP_444859.1| hypothetical protein CP0310 [Chlamydophila pneumoniae AR39]: Q-rich region from 346 to 380 corrected with score 62
>CPNE-AR3-01-000306 	gi|16752598|ref|NP_444860.1| hypothetical protein CP0311 [Chlamydophila pneumoniae AR39]: P-rich region from 143 to 157 corrected with score 53
>CPNE-AR3-01-000309 	gi|16752600|ref|NP_444863.1| hypothetical protein CP0314 [Chlamydophila pneumoniae AR39]: I-rich region from 46 to 99 corrected with score 46
>CPNE-AR3-01-000311 	gi|16752602|ref|NP_444865.1| ATP-dependent Clp protease, ATP-binding subunit [Chlamydophila pneumoniae AR39]: S-rich region from 153 to 186 corrected with score 61
>CPNE-AR3-01-000311 	gi|16752602|ref|NP_444865.1| ATP-dependent Clp protease, ATP-binding subunit [Chlamydophila pneumoniae AR39]: E-rich region from 441 to 498 corrected with score 55
>CPNE-AR3-01-000326 	gi|16752616|ref|NP_444880.1| hypothetical protein CP0331 [Chlamydophila pneumoniae AR39]: D-rich region from 129 to 144 corrected with score 54
>CPNE-AR3-01-000329 	gi|16752619|ref|NP_444883.1| hypothetical protein CP0334 [Chlamydophila pneumoniae AR39]: C-rich region from 10 to 16 corrected with score 42
>CPNE-AR3-01-000345 	gi|16752635|ref|NP_444899.1| hypothetical protein CP0350 [Chlamydophila pneumoniae AR39]: S-rich region from 30 to 202 corrected with score 103
>CPNE-AR3-01-000346 	gi|16752636|ref|NP_444900.1| hypothetical protein CP0351 [Chlamydophila pneumoniae AR39]: P-rich region from 266 to 290 corrected with score 41
>CPNE-AR3-01-000365 	gi|16752654|ref|NP_444919.1| Hc2 nucleoprotein [Chlamydophila pneumoniae AR39]: K-rich region from 5 to 157 corrected with score 126
>CPNE-AR3-01-000365 	gi|16752654|ref|NP_444919.1| Hc2 nucleoprotein [Chlamydophila pneumoniae AR39]: A-rich region from 12 to 128 corrected with score 60
>CPNE-AR3-01-000371 	gi|16752660|ref|NP_444925.1| hypothetical protein CP0377 [Chlamydophila pneumoniae AR39]: E-rich region from 27 to 127 corrected with score 54
>CPNE-AR3-01-000375 	gi|16752664|ref|NP_444929.1| hypothetical protein CP0381 [Chlamydophila pneumoniae AR39]: L-rich region from 42 to 103 corrected with score 43
>CPNE-AR3-01-000380 	gi|16752669|ref|NP_444934.1| hypothetical protein CP0386 [Chlamydophila pneumoniae AR39]: I-rich region from 41 to 97 corrected with score 56
>CPNE-AR3-01-000381 	gi|16752670|ref|NP_444935.1| hypothetical protein CP0387 [Chlamydophila pneumoniae AR39]: P-rich region from 83 to 127 corrected with score 46
>CPNE-AR3-01-000386 	gi|16752673|ref|NP_444940.1| hypothetical protein CP0391 [Chlamydophila pneumoniae AR39]: V-rich region from 46 to 110 corrected with score 40
>CPNE-AR3-01-000387 	gi|16752674|ref|NP_444941.1| hypothetical protein CP0392 [Chlamydophila pneumoniae AR39]: I-rich region from 38 to 83 corrected with score 44
>CPNE-AR3-01-000394 	gi|16752681|ref|NP_444948.1| GTP-binding protein LepA [Chlamydophila pneumoniae AR39]: K-rich region from 567 to 587 corrected with score 41
>CPNE-AR3-01-000396 	gi|16752683|ref|NP_444950.1| hypothetical protein CP0401 [Chlamydophila pneumoniae AR39]: V-rich region from 30 to 75 corrected with score 40
>CPNE-AR3-01-000411 	gi|16752698|ref|NP_444965.1| zinc protease [Chlamydophila pneumoniae AR39]: F-rich region from 600 to 620 corrected with score 41
>CPNE-AR3-01-000419 	gi|16752706|ref|NP_444973.1| hypothetical protein CP0425 [Chlamydophila pneumoniae AR39]: K-rich region from 3 to 72 corrected with score 54
>CPNE-AR3-01-000420 	gi|16752707|ref|NP_444974.1| hypothetical protein CP0426 [Chlamydophila pneumoniae AR39]: S-rich region from 4 to 463 corrected with score 167
>CPNE-AR3-01-000420 	gi|16752707|ref|NP_444974.1| hypothetical protein CP0426 [Chlamydophila pneumoniae AR39]: G-rich region from 544 to 562 corrected with score 44
>CPNE-AR3-01-000421 	gi|16752708|ref|NP_444975.1| hypothetical protein CP0427 [Chlamydophila pneumoniae AR39]: K-rich region from 51 to 116 corrected with score 74
>CPNE-AR3-01-000427 	gi|16752714|ref|NP_444981.1| type III secreted protein SctW [Chlamydophila pneumoniae AR39]: K-rich region from 59 to 91 corrected with score 49
>CPNE-AR3-01-000427 	gi|16752714|ref|NP_444981.1| type III secreted protein SctW [Chlamydophila pneumoniae AR39]: A-rich region from 2 to 36 corrected with score 40
>CPNE-AR3-01-000428 	gi|16752715|ref|NP_444982.1| type III secretion inner membrane protein SctV [Chlamydophila pneumoniae AR39]: I-rich region from 27 to 141 corrected with score 50
>CPNE-AR3-01-000434 	gi|16752721|ref|NP_444988.1| translation initiation factor IF-2 [Chlamydophila pneumoniae AR39]: S-rich region from 33 to 110 corrected with score 76
>CPNE-AR3-01-000434 	gi|16752721|ref|NP_444988.1| translation initiation factor IF-2 [Chlamydophila pneumoniae AR39]: K-rich region from 150 to 295 corrected with score 52
>CPNE-AR3-01-000451 	gi|16752738|ref|NP_445005.1| cationic outer membrane protein OmpH, putative [Chlamydophila pneumoniae AR39]: E-rich region from 33 to 144 corrected with score 57
>CPNE-AR3-01-000460 	gi|16752746|ref|NP_445014.1| hypothetical protein CP0466 [Chlamydophila pneumoniae AR39]: I-rich region from 128 to 151 corrected with score 46
>CPNE-AR3-01-000461 	gi|16752747|ref|NP_445015.1| inclusion membrane protein B [Chlamydophila pneumoniae AR39]: V-rich region from 99 to 172 corrected with score 47
>CPNE-AR3-01-000469 	gi|16752755|ref|NP_445023.1| amino acid antiporter [Chlamydophila pneumoniae AR39]: W-rich region from 81 to 98 corrected with score 40
>CPNE-AR3-01-000474 	gi|16752760|ref|NP_445028.1| hypothetical protein CP0481 [Chlamydophila pneumoniae AR39]: V-rich region from 76 to 136 corrected with score 65
>CPNE-AR3-01-000485 	gi|16752771|ref|NP_445039.1| hypothetical protein CP0492 [Chlamydophila pneumoniae AR39]: N-rich region from 53 to 125 corrected with score 44
>CPNE-AR3-01-000494 	gi|16752780|ref|NP_445048.1| hypothetical protein CP0501 [Chlamydophila pneumoniae AR39]: K-rich region from 20 to 117 corrected with score 41
>CPNE-AR3-01-000506 	gi|16752792|ref|NP_445060.1| 30S ribosomal protein S9 [Chlamydophila pneumoniae AR39]: K-rich region from 93 to 134 corrected with score 40
>CPNE-AR3-01-000509 	gi|16752795|ref|NP_445063.1| hypothetical protein CP0519 [Chlamydophila pneumoniae AR39]: V-rich region from 19 to 60 corrected with score 40
>CPNE-AR3-01-000510 	gi|16752796|ref|NP_445064.1| hypothetical protein CP0520 [Chlamydophila pneumoniae AR39]: V-rich region from 26 to 57 corrected with score 44
>CPNE-AR3-01-000512 	gi|16752798|ref|NP_445066.1| hypothetical protein CP0522 [Chlamydophila pneumoniae AR39]: G-rich region from 316 to 364 corrected with score 81
>CPNE-AR3-01-000512 	gi|16752798|ref|NP_445066.1| hypothetical protein CP0522 [Chlamydophila pneumoniae AR39]: P-rich region from 366 to 381 corrected with score 52
>CPNE-AR3-01-000512 	gi|16752798|ref|NP_445066.1| hypothetical protein CP0522 [Chlamydophila pneumoniae AR39]: A-rich region from 164 to 237 corrected with score 47
>CPNE-AR3-01-000524 	gi|16752809|ref|NP_445078.1| hypothetical protein CP0534 [Chlamydophila pneumoniae AR39]: K-rich region from 77 to 167 corrected with score 53
>CPNE-AR3-01-000529 	gi|16752814|ref|NP_445083.1| hypothetical protein CP0539 [Chlamydophila pneumoniae AR39]: K-rich region from 140 to 223 corrected with score 59
>CPNE-AR3-01-000529 	gi|16752814|ref|NP_445083.1| hypothetical protein CP0539 [Chlamydophila pneumoniae AR39]: L-rich region from 32 to 89 corrected with score 43
>CPNE-AR3-01-000540 	gi|16752825|ref|NP_445094.1| hypothetical protein CP0550 [Chlamydophila pneumoniae AR39]: L-rich region from 31 to 86 corrected with score 44
>CPNE-AR3-01-000543 	gi|16752828|ref|NP_445097.1| hypothetical protein CP0553 [Chlamydophila pneumoniae AR39]: L-rich region from 41 to 88 corrected with score 42
>CPNE-AR3-01-000570 	gi|16752854|ref|NP_445124.1| hypothetical protein CP0581 [Chlamydophila pneumoniae AR39]: Q-rich region from 219 to 336 corrected with score 64
>CPNE-AR3-01-000582 	gi|16752866|ref|NP_445136.1| hypothetical protein CP0593 [Chlamydophila pneumoniae AR39]: S-rich region from 121 to 154 corrected with score 41
>CPNE-AR3-01-000584 	gi|16752868|ref|NP_445138.1| hypothetical protein CP0595 [Chlamydophila pneumoniae AR39]: I-rich region from 58 to 115 corrected with score 50
>CPNE-AR3-01-000593 	gi|16752877|ref|NP_445147.1| hypothetical protein CP0605 [Chlamydophila pneumoniae AR39]: L-rich region from 29 to 82 corrected with score 63
>CPNE-AR3-01-000611 	gi|16752894|ref|NP_445165.1| hypothetical protein CP0623 [Chlamydophila pneumoniae AR39]: E-rich region from 1398 to 1509 corrected with score 49
>CPNE-AR3-01-000614 	gi|16752897|ref|NP_445168.1| hypothetical protein CP0626 [Chlamydophila pneumoniae AR39]: A-rich region from 2 to 88 corrected with score 43
>CPNE-AR3-01-000617 	gi|16752900|ref|NP_445171.1| ATP-dependent Clp protease, subunit B [Chlamydophila pneumoniae AR39]: E-rich region from 418 to 540 corrected with score 64
>CPNE-AR3-01-000629 	gi|16752912|ref|NP_445183.1| hypothetical protein CP0641 [Chlamydophila pneumoniae AR39]: L-rich region from 36 to 83 corrected with score 48
>CPNE-AR3-01-000630 	gi|16752913|ref|NP_445184.1| hypothetical protein CP0642 [Chlamydophila pneumoniae AR39]: L-rich region from 29 to 77 corrected with score 47
>CPNE-AR3-01-000634 	gi|16752917|ref|NP_445188.1| hypothetical protein CP0646 [Chlamydophila pneumoniae AR39]: E-rich region from 357 to 463 corrected with score 48
>CPNE-AR3-01-000636 	gi|16752919|ref|NP_445190.1| hypothetical protein CP0648 [Chlamydophila pneumoniae AR39]: E-rich region from 29 to 170 corrected with score 59
>CPNE-AR3-01-000658 	gi|16752941|ref|NP_445212.1| hypothetical protein CP0670 [Chlamydophila pneumoniae AR39]: S-rich region from 240 to 271 corrected with score 40
>CPNE-AR3-01-000694 	gi|16752975|ref|NP_445248.1| hypothetical protein CP0706 [Chlamydophila pneumoniae AR39]: E-rich region from 25 to 99 corrected with score 53
>CPNE-AR3-01-000695 	gi|16752976|ref|NP_445249.1| hypothetical protein CP0707 [Chlamydophila pneumoniae AR39]: I-rich region from 34 to 83 corrected with score 49
>CPNE-AR3-01-000697 	gi|16752978|ref|NP_445251.1| hypothetical protein CP0709 [Chlamydophila pneumoniae AR39]: V-rich region from 247 to 298 corrected with score 43
>CPNE-AR3-01-000698 	gi|16752979|ref|NP_445252.1| hypothetical protein CP0710 [Chlamydophila pneumoniae AR39]: L-rich region from 47 to 68 corrected with score 40
>CPNE-AR3-01-000701 	gi|16752982|ref|NP_445255.1| hypothetical protein CP0713 [Chlamydophila pneumoniae AR39]: S-rich region from 3 to 424 corrected with score 91
>CPNE-AR3-01-000701 	gi|16752982|ref|NP_445255.1| hypothetical protein CP0713 [Chlamydophila pneumoniae AR39]: K-rich region from 45 to 120 corrected with score 48
>CPNE-AR3-01-000713 	gi|16752994|ref|NP_445267.1| hypothetical protein CP0725 [Chlamydophila pneumoniae AR39]: L-rich region from 105 to 139 corrected with score 49
>CPNE-AR3-01-000716 	gi|16752997|ref|NP_445270.1| hypothetical protein CP0728 [Chlamydophila pneumoniae AR39]: E-rich region from 351 to 460 corrected with score 62
>CPNE-AR3-01-000716 	gi|16752997|ref|NP_445270.1| hypothetical protein CP0728 [Chlamydophila pneumoniae AR39]: K-rich region from 660 to 713 corrected with score 47
>CPNE-AR3-01-000717 	gi|16752998|ref|NP_445271.1| hypothetical protein CP0729 [Chlamydophila pneumoniae AR39]: K-rich region from 43 to 97 corrected with score 50
>CPNE-AR3-01-000718 	gi|16752999|ref|NP_445272.1| hypothetical protein CP0730 [Chlamydophila pneumoniae AR39]: E-rich region from 392 to 536 corrected with score 58
>CPNE-AR3-01-000718 	gi|16752999|ref|NP_445272.1| hypothetical protein CP0730 [Chlamydophila pneumoniae AR39]: P-rich region from 4 to 14 corrected with score 41
>CPNE-AR3-01-000721 	gi|16753002|ref|NP_445275.1| hypothetical protein CP0733 [Chlamydophila pneumoniae AR39]: E-rich region from 255 to 447 corrected with score 61
>CPNE-AR3-01-000728 	gi|16753009|ref|NP_445282.1| hypothetical protein CP0740 [Chlamydophila pneumoniae AR39]: S-rich region from 3 to 86 corrected with score 41
>CPNE-AR3-01-000730 	gi|16753011|ref|NP_445284.1| hypothetical protein CP0742 [Chlamydophila pneumoniae AR39]: P-rich region from 117 to 155 corrected with score 79
>CPNE-AR3-01-000732 	gi|16753013|ref|NP_445286.1| dnaJ protein [Chlamydophila pneumoniae AR39]: G-rich region from 67 to 133 corrected with score 61
>CPNE-AR3-01-000733 	gi|16753014|ref|NP_445287.1| 30S ribosomal protein S21 [Chlamydophila pneumoniae AR39]: K-rich region from 20 to 58 corrected with score 40
>CPNE-AR3-01-000736 	gi|16753017|ref|NP_445290.1| hypothetical protein CP0748 [Chlamydophila pneumoniae AR39]: I-rich region from 73 to 101 corrected with score 43
>CPNE-AR3-01-000737 	gi|16753018|ref|NP_445291.1| Lon family protease [Chlamydophila pneumoniae AR39]: E-rich region from 13 to 37 corrected with score 40
>CPNE-AR3-01-000738 	gi|16753019|ref|NP_445292.1| hypothetical protein CP0750 [Chlamydophila pneumoniae AR39]: S-rich region from 90 to 268 corrected with score 82
>CPNE-AR3-01-000738 	gi|16753019|ref|NP_445292.1| hypothetical protein CP0750 [Chlamydophila pneumoniae AR39]: K-rich region from 183 to 245 corrected with score 50
>CPNE-AR3-01-000738 	gi|16753019|ref|NP_445292.1| hypothetical protein CP0750 [Chlamydophila pneumoniae AR39]: I-rich region from 34 to 81 corrected with score 47
>CPNE-AR3-01-000741 	gi|16753022|ref|NP_445295.1| ABC transporter, ATP-binding protein [Chlamydophila pneumoniae AR39]: K-rich region from 240 to 301 corrected with score 41
>CPNE-AR3-01-000746 	gi|16753027|ref|NP_445300.1| polymorphic membrane protein G family protein [Chlamydophila pneumoniae AR39]: S-rich region from 17 to 344 corrected with score 115
>CPNE-AR3-01-000747 	gi|16753028|ref|NP_445301.1| hypothetical protein CP0762 [Chlamydophila pneumoniae AR39]: E-rich region from 99 to 273 corrected with score 78
>CPNE-AR3-01-000747 	gi|16753028|ref|NP_445301.1| hypothetical protein CP0762 [Chlamydophila pneumoniae AR39]: K-rich region from 463 to 522 corrected with score 45
>CPNE-AR3-01-000748 	gi|16753029|ref|NP_445302.1| hypothetical protein CP0763 [Chlamydophila pneumoniae AR39]: I-rich region from 33 to 85 corrected with score 44
>CPNE-AR3-01-000749 	gi|16753030|ref|NP_445303.1| hypothetical protein CP0764 [Chlamydophila pneumoniae AR39]: E-rich region from 355 to 530 corrected with score 67
>CPNE-AR3-01-000750 	gi|16753031|ref|NP_445304.1| hypothetical protein CP0765 [Chlamydophila pneumoniae AR39]: E-rich region from 13 to 190 corrected with score 72
>CPNE-AR3-01-000754 	gi|16753035|ref|NP_445308.1| hypothetical protein CP0769 [Chlamydophila pneumoniae AR39]: E-rich region from 589 to 811 corrected with score 69
>CPNE-AR3-01-000754 	gi|16753035|ref|NP_445308.1| hypothetical protein CP0769 [Chlamydophila pneumoniae AR39]: I-rich region from 140 to 164 corrected with score 41
>CPNE-AR3-01-000754 	gi|16753035|ref|NP_445308.1| hypothetical protein CP0769 [Chlamydophila pneumoniae AR39]: I-rich region from 250 to 274 corrected with score 41
>CPNE-AR3-01-000764 	gi|16753045|ref|NP_445318.1| hypothetical protein CP0779 [Chlamydophila pneumoniae AR39]: D-rich region from 441 to 454 corrected with score 43
>CPNE-AR3-01-000779 	gi|16753060|ref|NP_445333.1| hypothetical protein CP0794 [Chlamydophila pneumoniae AR39]: K-rich region from 164 to 234 corrected with score 49
>CPNE-AR3-01-000782 	gi|16753080|ref|NP_445336.1| hypothetical protein CP0797 [Chlamydophila pneumoniae AR39]: E-rich region from 355 to 512 corrected with score 61
>CPNE-AR3-01-000810 	gi|16751998|ref|NP_445364.1| hypothetical protein CP0825 [Chlamydophila pneumoniae AR39]: I-rich region from 33 to 92 corrected with score 44
>CPNE-AR3-01-000814 	gi|16752002|ref|NP_445368.1| hypothetical protein CP0829 [Chlamydophila pneumoniae AR39]: Y-rich region from 56 to 74 corrected with score 52
>CPNE-AR3-01-000816 	gi|16752004|ref|NP_445370.1| hypothetical protein CP0831 [Chlamydophila pneumoniae AR39]: Q-rich region from 99 to 264 corrected with score 116
>CPNE-AR3-01-000816 	gi|16752004|ref|NP_445370.1| hypothetical protein CP0831 [Chlamydophila pneumoniae AR39]: S-rich region from 103 to 228 corrected with score 71
>CPNE-AR3-01-000816 	gi|16752004|ref|NP_445370.1| hypothetical protein CP0831 [Chlamydophila pneumoniae AR39]: K-rich region from 217 to 264 corrected with score 47
>CPNE-AR3-01-000818 	gi|16752006|ref|NP_445372.1| hypothetical protein CP0833 [Chlamydophila pneumoniae AR39]: Q-rich region from 89 to 248 corrected with score 64
>CPNE-AR3-01-000819 	gi|16752007|ref|NP_445373.1| hypothetical protein CP0834 [Chlamydophila pneumoniae AR39]: S-rich region from 92 to 290 corrected with score 118
>CPNE-AR3-01-000819 	gi|16752007|ref|NP_445373.1| hypothetical protein CP0834 [Chlamydophila pneumoniae AR39]: Q-rich region from 160 to 286 corrected with score 74
>CPNE-AR3-01-000829 	gi|16752017|ref|NP_445383.1| hypothetical protein CP0845 [Chlamydophila pneumoniae AR39]: E-rich region from 127 to 420 corrected with score 42
>CPNE-AR3-01-000831 	gi|16752019|ref|NP_445385.1| hypothetical protein CP0847 [Chlamydophila pneumoniae AR39]: Q-rich region from 43 to 141 corrected with score 52
>CPNE-AR3-01-000832 	gi|16752020|ref|NP_445386.1| hypothetical protein CP0848 [Chlamydophila pneumoniae AR39]: N-rich region from 96 to 147 corrected with score 41
>CPNE-AR3-01-000833 	gi|16752021|ref|NP_445387.1| hypothetical protein CP0849 [Chlamydophila pneumoniae AR39]: Q-rich region from 68 to 149 corrected with score 58
>CPNE-AR3-01-000845 	gi|16752033|ref|NP_445399.1| hypothetical protein CP0861 [Chlamydophila pneumoniae AR39]: E-rich region from 94 to 142 corrected with score 42
>CPNE-AR3-01-000848 	gi|16752036|ref|NP_445402.1| 50S ribosomal protein L35 [Chlamydophila pneumoniae AR39]: K-rich region from 3 to 47 corrected with score 44
>CPNE-AR3-01-000849 	gi|16752037|ref|NP_445403.1| translation initiation factor IF-3 [Chlamydophila pneumoniae AR39]: K-rich region from 71 to 117 corrected with score 41
>CPNE-AR3-01-000859 	gi|16752047|ref|NP_445413.1| insulinase family metalloprotease [Chlamydophila pneumoniae AR39]: E-rich region from 462 to 508 corrected with score 42
>CPNE-AR3-01-000872 	gi|16752060|ref|NP_445426.1| hypothetical protein CP0888 [Chlamydophila pneumoniae AR39]: I-rich region from 141 to 181 corrected with score 42
>CPNE-AR3-01-000881 	gi|16752069|ref|NP_445435.1| polymorphic membrane protein D family protein [Chlamydophila pneumoniae AR39]: S-rich region from 125 to 933 corrected with score 82
>CPNE-AR3-01-000907 	gi|16752095|ref|NP_445461.1| 30S ribosomal protein S14 [Chlamydophila pneumoniae AR39]: K-rich region from 3 to 53 corrected with score 41
>CPNE-AR3-01-000909 	gi|16753063|ref|NP_445463.1| 50S ribosomal protein L34 [Chlamydophila pneumoniae AR39]: R-rich region from 2 to 40 corrected with score 47
>CPNE-AR3-01-000924 	gi|16752111|ref|NP_445478.1| hypothetical protein CP0941 [Chlamydophila pneumoniae AR39]: P-rich region from 54 to 66 corrected with score 40
>CPNE-AR3-01-000937 	gi|16752124|ref|NP_445491.1| hypothetical protein CP0954 [Chlamydophila pneumoniae AR39]: Q-rich region from 370 to 551 corrected with score 43
>CPNE-AR3-01-000953 	gi|16752140|ref|NP_445507.1| hypothetical protein CP0970 [Chlamydophila pneumoniae AR39]: K-rich region from 2 to 33 corrected with score 44
>CPNE-AR3-01-000963 	gi|16752150|ref|NP_445517.1| histone H1-like protein HC1 [Chlamydophila pneumoniae AR39]: K-rich region from 4 to 123 corrected with score 110
>CPNE-AR3-01-000963 	gi|16752150|ref|NP_445517.1| histone H1-like protein HC1 [Chlamydophila pneumoniae AR39]: A-rich region from 67 to 109 corrected with score 40
>CPNE-AR3-01-000969 	gi|16752156|ref|NP_445523.1| hypothetical protein CP0986 [Chlamydophila pneumoniae AR39]: S-rich region from 6 to 87 corrected with score 45
>CPNE-AR3-01-000972 	gi|16752159|ref|NP_445526.1| cell division protein FtsK, putative [Chlamydophila pneumoniae AR39]: F-rich region from 57 to 84 corrected with score 45
>CPNE-AR3-01-000976 	gi|16752163|ref|NP_445530.1| sodium/alanine symporter family protein [Chlamydophila pneumoniae AR39]: V-rich region from 295 to 321 corrected with score 42
>CPNE-AR3-01-000998 	gi|16752185|ref|NP_445552.1| major outer membrane protein, putative [Chlamydophila pneumoniae AR39]: T-rich region from 87 to 137 corrected with score 52
>CPNE-AR3-01-001000 	gi|16752187|ref|NP_445554.1| hypothetical protein CP1017 [Chlamydophila pneumoniae AR39]: Q-rich region from 707 to 742 corrected with score 46
>CPNE-AR3-01-001003 	gi|16752190|ref|NP_445557.1| SNF2 family helicase [Chlamydophila pneumoniae AR39]: E-rich region from 109 to 144 corrected with score 48
>CPNE-AR3-01-001008 	gi|16752195|ref|NP_445562.1| GTP-binding protein EngA [Chlamydophila pneumoniae AR39]: E-rich region from 166 to 187 corrected with score 51
>CPNE-AR3-01-001026 	gi|16752212|ref|NP_445580.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39]: E-rich region from 287 to 333 corrected with score 50
>CPNE-AR3-01-001029 	gi|16752215|ref|NP_445583.1| type III secretion system protein [Chlamydophila pneumoniae AR39]: L-rich region from 93 to 121 corrected with score 43
>CPNE-AR3-01-001029 	gi|16752215|ref|NP_445583.1| type III secretion system protein [Chlamydophila pneumoniae AR39]: L-rich region from 249 to 303 corrected with score 42
>CPNE-AR3-01-001031 	gi|16752217|ref|NP_445585.1| type III secretion inner membrane protein SctT [Chlamydophila pneumoniae AR39]: M-rich region from 165 to 282 corrected with score 45
>CPNE-AR3-01-001043 	gi|16752229|ref|NP_445597.1| type III secretion chaperone SycD [Chlamydophila pneumoniae AR39]: K-rich region from 186 to 231 corrected with score 48
>CPNE-AR3-01-001045 	gi|16752231|ref|NP_445599.1| hypothetical protein CP1062 [Chlamydophila pneumoniae AR39]: A-rich region from 56 to 488 corrected with score 154
>CPNE-AR3-01-001045 	gi|16752231|ref|NP_445599.1| hypothetical protein CP1062 [Chlamydophila pneumoniae AR39]: S-rich region from 2 to 160 corrected with score 65
>CPNE-AR3-01-001046 	gi|16752232|ref|NP_445600.1| hypothetical protein CP1063 [Chlamydophila pneumoniae AR39]: S-rich region from 2 to 441 corrected with score 213
>CPNE-AR3-01-001046 	gi|16752232|ref|NP_445600.1| hypothetical protein CP1063 [Chlamydophila pneumoniae AR39]: A-rich region from 177 to 310 corrected with score 89
>CPNE-AR3-01-001072 	gi|16752258|ref|NP_445626.1| hypothetical protein CP1089 [Chlamydophila pneumoniae AR39]: P-rich region from 46 to 121 corrected with score 64
>CPNE-AR3-01-001086 	gi|16752272|ref|NP_445640.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila pneumoniae AR39]: K-rich region from 737 to 784 corrected with score 71
>CPNE-AR3-01-001086 	gi|16752272|ref|NP_445640.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila pneumoniae AR39]: E-rich region from 437 to 470 corrected with score 43
>CPNE-AR3-01-001100 	gi|16752285|ref|NP_445654.1| hypothetical protein CP1117 [Chlamydophila pneumoniae AR39]: Q-rich region from 59 to 200 corrected with score 52
>CPNE-AR3-01-001109 	gi|16752294|ref|NP_445663.1| hypothetical protein CP1126 [Chlamydophila pneumoniae AR39]: H-rich region from 274 to 279 corrected with score 40
>CPNE-CWL-01-000006 	gi|15617936|ref|NP_224220.1| hypothetical protein CPn0007 [Chlamydophila pneumoniae CWL029]: E-rich region from 565 to 787 corrected with score 67
>CPNE-CWL-01-000006 	gi|15617936|ref|NP_224220.1| hypothetical protein CPn0007 [Chlamydophila pneumoniae CWL029]: I-rich region from 116 to 140 corrected with score 41
>CPNE-CWL-01-000006 	gi|15617936|ref|NP_224220.1| hypothetical protein CPn0007 [Chlamydophila pneumoniae CWL029]: I-rich region from 226 to 250 corrected with score 41
>CPNE-CWL-01-000008 	gi|15617938|ref|NP_224222.1| hypothetical protein CPn0009 [Chlamydophila pneumoniae CWL029]: E-rich region from 13 to 190 corrected with score 72
>CPNE-CWL-01-000010 	gi|15617940|ref|NP_224224.1| hypothetical protein CPn0010.1 [Chlamydophila pneumoniae CWL029]: E-rich region from 40 to 215 corrected with score 71
>CPNE-CWL-01-000011 	gi|15617941|ref|NP_224225.1| hypothetical protein CPn0011 [Chlamydophila pneumoniae CWL029]: I-rich region from 33 to 85 corrected with score 44
>CPNE-CWL-01-000012 	gi|15617942|ref|NP_224226.1| hypothetical protein CPn0012 [Chlamydophila pneumoniae CWL029]: E-rich region from 99 to 273 corrected with score 78
>CPNE-CWL-01-000012 	gi|15617942|ref|NP_224226.1| hypothetical protein CPn0012 [Chlamydophila pneumoniae CWL029]: K-rich region from 463 to 522 corrected with score 45
>CPNE-CWL-01-000013 	gi|15617943|ref|NP_224227.1| polymorphic Outer membrane protein G family [Chlamydophila pneumoniae CWL029]: S-rich region from 17 to 344 corrected with score 115
>CPNE-CWL-01-000017 	gi|15617947|ref|NP_224231.1| ABC transporter ATPase [Chlamydophila pneumoniae CWL029]: K-rich region from 240 to 301 corrected with score 41
>CPNE-CWL-01-000020 	gi|15617950|ref|NP_224234.1| hypothetical protein CPn0026 [Chlamydophila pneumoniae CWL029]: S-rich region from 90 to 268 corrected with score 82
>CPNE-CWL-01-000020 	gi|15617950|ref|NP_224234.1| hypothetical protein CPn0026 [Chlamydophila pneumoniae CWL029]: K-rich region from 183 to 245 corrected with score 53
>CPNE-CWL-01-000020 	gi|15617950|ref|NP_224234.1| hypothetical protein CPn0026 [Chlamydophila pneumoniae CWL029]: I-rich region from 34 to 81 corrected with score 47
>CPNE-CWL-01-000021 	gi|15617951|ref|NP_224235.1| Lon ATP-dependent protease [Chlamydophila pneumoniae CWL029]: E-rich region from 13 to 37 corrected with score 40
>CPNE-CWL-01-000022 	gi|15617952|ref|NP_224236.1| hypothetical protein CPn0028 [Chlamydophila pneumoniae CWL029]: I-rich region from 73 to 101 corrected with score 43
>CPNE-CWL-01-000025 	gi|15617955|ref|NP_224239.1| 30S ribosomal protein S21 [Chlamydophila pneumoniae CWL029]: K-rich region from 20 to 58 corrected with score 40
>CPNE-CWL-01-000026 	gi|15617956|ref|NP_224240.1| heat shock protein J [Chlamydophila pneumoniae CWL029]: G-rich region from 67 to 133 corrected with score 61
>CPNE-CWL-01-000028 	gi|15617958|ref|NP_224242.1| hypothetical protein CPn0034 [Chlamydophila pneumoniae CWL029]: P-rich region from 108 to 146 corrected with score 79
>CPNE-CWL-01-000035 	gi|15617965|ref|NP_224249.1| hypothetical protein CPn0041 [Chlamydophila pneumoniae CWL029]: E-rich region from 255 to 447 corrected with score 61
>CPNE-CWL-01-000037 	gi|15617967|ref|NP_224251.1| hypothetical protein CPn0043 [Chlamydophila pneumoniae CWL029]: E-rich region from 392 to 536 corrected with score 58
>CPNE-CWL-01-000037 	gi|15617967|ref|NP_224251.1| hypothetical protein CPn0043 [Chlamydophila pneumoniae CWL029]: P-rich region from 4 to 14 corrected with score 41
>CPNE-CWL-01-000038 	gi|15617968|ref|NP_224252.1| hypothetical protein CPn0044 [Chlamydophila pneumoniae CWL029]: K-rich region from 43 to 97 corrected with score 50
>CPNE-CWL-01-000039 	gi|15617969|ref|NP_224253.1| hypothetical protein CPn0045 [Chlamydophila pneumoniae CWL029]: E-rich region from 351 to 471 corrected with score 62
>CPNE-CWL-01-000040 	gi|15617970|ref|NP_224254.1| hypothetical protein CPn0046 [Chlamydophila pneumoniae CWL029]: K-rich region from 83 to 136 corrected with score 47
>CPNE-CWL-01-000043 	gi|15617973|ref|NP_224257.1| hypothetical protein CPn0049 [Chlamydophila pneumoniae CWL029]: L-rich region from 105 to 139 corrected with score 49
>CPNE-CWL-01-000044 	gi|15617974|ref|NP_224258.1| hypothetical protein CPn0050 [Chlamydophila pneumoniae CWL029]: L-rich region from 53 to 85 corrected with score 49
>CPNE-CWL-01-000056 	gi|15617986|ref|NP_224270.1| hypothetical protein CPn0062 [Chlamydophila pneumoniae CWL029]: S-rich region from 3 to 424 corrected with score 91
>CPNE-CWL-01-000056 	gi|15617986|ref|NP_224270.1| hypothetical protein CPn0062 [Chlamydophila pneumoniae CWL029]: K-rich region from 45 to 120 corrected with score 48
>CPNE-CWL-01-000058 	gi|15617988|ref|NP_224272.1| hypothetical protein CPn0064 [Chlamydophila pneumoniae CWL029]: L-rich region from 47 to 68 corrected with score 40
>CPNE-CWL-01-000059 	gi|15617989|ref|NP_224273.1| hypothetical protein CPn0065 [Chlamydophila pneumoniae CWL029]: V-rich region from 240 to 291 corrected with score 43
>CPNE-CWL-01-000061 	gi|15617991|ref|NP_224275.1| hypothetical protein CPn0067 [Chlamydophila pneumoniae CWL029]: I-rich region from 34 to 83 corrected with score 49
>CPNE-CWL-01-000062 	gi|15617992|ref|NP_224276.1| hypothetical protein CPn0068 [Chlamydophila pneumoniae CWL029]: E-rich region from 25 to 99 corrected with score 53
>CPNE-CWL-01-000098 	gi|15618028|ref|NP_224312.1| hypothetical protein CPn0104 [Chlamydophila pneumoniae CWL029]: S-rich region from 240 to 271 corrected with score 40
>CPNE-CWL-01-000119 	gi|15618049|ref|NP_224333.1| hypothetical protein CPn0125 [Chlamydophila pneumoniae CWL029]: E-rich region from 29 to 170 corrected with score 59
>CPNE-CWL-01-000120 	gi|15618050|ref|NP_224334.1| hypothetical protein CPn0126 [Chlamydophila pneumoniae CWL029]: E-rich region from 357 to 463 corrected with score 48
>CPNE-CWL-01-000124 	gi|15618054|ref|NP_224338.1| hypothetical protein CPn0130 [Chlamydophila pneumoniae CWL029]: L-rich region from 29 to 77 corrected with score 47
>CPNE-CWL-01-000125 	gi|15618055|ref|NP_224339.1| hypothetical protein CPn0131 [Chlamydophila pneumoniae CWL029]: L-rich region from 34 to 81 corrected with score 48
>CPNE-CWL-01-000138 	gi|15618068|ref|NP_224352.1| Clp protease ATPase [Chlamydophila pneumoniae CWL029]: E-rich region from 412 to 534 corrected with score 64
>CPNE-CWL-01-000141 	gi|15618071|ref|NP_224355.1| hypothetical protein CPn0147 [Chlamydophila pneumoniae CWL029]: A-rich region from 2 to 88 corrected with score 43
>CPNE-CWL-01-000144 	gi|15618074|ref|NP_224358.1| hypothetical protein CPn0150 [Chlamydophila pneumoniae CWL029]: E-rich region from 1398 to 1509 corrected with score 56
>CPNE-CWL-01-000160 	gi|15618090|ref|NP_224374.1| hypothetical protein CPn0166 [Chlamydophila pneumoniae CWL029]: L-rich region from 29 to 82 corrected with score 63
>CPNE-CWL-01-000169 	gi|15618098|ref|NP_224383.1| hypothetical protein CPn0174 [Chlamydophila pneumoniae CWL029]: I-rich region from 50 to 107 corrected with score 50
>CPNE-CWL-01-000171 	gi|15618100|ref|NP_224385.1| hypothetical protein CPn0176 [Chlamydophila pneumoniae CWL029]: S-rich region from 121 to 154 corrected with score 41
>CPNE-CWL-01-000181 	gi|15618110|ref|NP_224395.1| IncA [Chlamydophila pneumoniae CWL029]: Q-rich region from 219 to 336 corrected with score 64
>CPNE-CWL-01-000207 	gi|15618136|ref|NP_224421.1| hypothetical protein CPn0212 [Chlamydophila pneumoniae CWL029]: L-rich region from 41 to 88 corrected with score 42
>CPNE-CWL-01-000210 	gi|15618139|ref|NP_224424.1| hypothetical protein CPn0215 [Chlamydophila pneumoniae CWL029]: L-rich region from 31 to 86 corrected with score 44
>CPNE-CWL-01-000220 	gi|15618149|ref|NP_224434.1| hypothetical protein CPn0225 [Chlamydophila pneumoniae CWL029]: K-rich region from 140 to 223 corrected with score 59
>CPNE-CWL-01-000220 	gi|15618149|ref|NP_224434.1| hypothetical protein CPn0225 [Chlamydophila pneumoniae CWL029]: L-rich region from 32 to 89 corrected with score 43
>CPNE-CWL-01-000225 	gi|15618154|ref|NP_224439.1| hypothetical protein CPn0230 [Chlamydophila pneumoniae CWL029]: K-rich region from 126 to 216 corrected with score 53
>CPNE-CWL-01-000235 	gi|15618164|ref|NP_224449.1| hypothetical protein CPn0240 [Chlamydophila pneumoniae CWL029]: G-rich region from 316 to 364 corrected with score 81
>CPNE-CWL-01-000235 	gi|15618164|ref|NP_224449.1| hypothetical protein CPn0240 [Chlamydophila pneumoniae CWL029]: P-rich region from 366 to 381 corrected with score 52
>CPNE-CWL-01-000235 	gi|15618164|ref|NP_224449.1| hypothetical protein CPn0240 [Chlamydophila pneumoniae CWL029]: A-rich region from 164 to 237 corrected with score 47
>CPNE-CWL-01-000237 	gi|15618166|ref|NP_224451.1| hypothetical protein CPn0242 [Chlamydophila pneumoniae CWL029]: V-rich region from 26 to 57 corrected with score 44
>CPNE-CWL-01-000238 	gi|15618167|ref|NP_224452.1| hypothetical protein CPn0243 [Chlamydophila pneumoniae CWL029]: V-rich region from 19 to 60 corrected with score 40
>CPNE-CWL-01-000241 	gi|15618170|ref|NP_224455.1| 30S ribosomal protein S9 [Chlamydophila pneumoniae CWL029]: K-rich region from 93 to 134 corrected with score 40
>CPNE-CWL-01-000251 	gi|15618180|ref|NP_224465.1| protein translocase subunit [Chlamydophila pneumoniae CWL029]: K-rich region from 15 to 112 corrected with score 41
>CPNE-CWL-01-000259 	gi|15618188|ref|NP_224473.1| hypothetical protein CPn0268 [Chlamydophila pneumoniae CWL029]: N-rich region from 53 to 125 corrected with score 44
>CPNE-CWL-01-000268 	gi|15618197|ref|NP_224482.1| hypothetical protein CPn0277 [Chlamydophila pneumoniae CWL029]: V-rich region from 76 to 136 corrected with score 65
>CPNE-CWL-01-000273 	gi|15618202|ref|NP_224487.1| amino acid transporter [Chlamydophila pneumoniae CWL029]: W-rich region from 81 to 98 corrected with score 40
>CPNE-CWL-01-000282 	gi|15618211|ref|NP_224496.1| inclusion membrane protein B [Chlamydophila pneumoniae CWL029]: V-rich region from 99 to 172 corrected with score 47
>CPNE-CWL-01-000283 	gi|15618212|ref|NP_224497.1| inclusion membrane protein C [Chlamydophila pneumoniae CWL029]: I-rich region from 128 to 151 corrected with score 46
>CPNE-CWL-01-000292 	gi|15618221|ref|NP_224506.1| OmpH-like Outer membrane protein [Chlamydophila pneumoniae CWL029]: E-rich region from 33 to 144 corrected with score 57
>CPNE-CWL-01-000308 	gi|15618237|ref|NP_224522.1| translation initiation factor IF-2 [Chlamydophila pneumoniae CWL029]: S-rich region from 33 to 110 corrected with score 76
>CPNE-CWL-01-000308 	gi|15618237|ref|NP_224522.1| translation initiation factor IF-2 [Chlamydophila pneumoniae CWL029]: K-rich region from 150 to 295 corrected with score 52
>CPNE-CWL-01-000314 	gi|15618243|ref|NP_224528.1| low calcium response D [Chlamydophila pneumoniae CWL029]: I-rich region from 27 to 141 corrected with score 50
>CPNE-CWL-01-000315 	gi|15618244|ref|NP_224529.1| low calcium response E [Chlamydophila pneumoniae CWL029]: K-rich region from 59 to 91 corrected with score 49
>CPNE-CWL-01-000315 	gi|15618244|ref|NP_224529.1| low calcium response E [Chlamydophila pneumoniae CWL029]: A-rich region from 2 to 36 corrected with score 40
>CPNE-CWL-01-000321 	gi|15618250|ref|NP_224535.1| hypothetical protein CPn0330 [Chlamydophila pneumoniae CWL029]: K-rich region from 51 to 116 corrected with score 74
>CPNE-CWL-01-000322 	gi|15618251|ref|NP_224536.1| hypothetical protein CPn0331 [Chlamydophila pneumoniae CWL029]: S-rich region from 4 to 463 corrected with score 167
>CPNE-CWL-01-000322 	gi|15618251|ref|NP_224536.1| hypothetical protein CPn0331 [Chlamydophila pneumoniae CWL029]: G-rich region from 544 to 562 corrected with score 44
>CPNE-CWL-01-000324 	gi|15618253|ref|NP_224538.1| late transcription unit B protein [Chlamydophila pneumoniae CWL029]: K-rich region from 3 to 72 corrected with score 54
>CPNE-CWL-01-000330 	gi|15618259|ref|NP_224544.1| metalloprotease [Chlamydophila pneumoniae CWL029]: F-rich region from 600 to 620 corrected with score 41
>CPNE-CWL-01-000343 	gi|15618272|ref|NP_224557.1| hypothetical protein CPn0357 [Chlamydophila pneumoniae CWL029]: V-rich region from 30 to 75 corrected with score 40
>CPNE-CWL-01-000345 	gi|15618274|ref|NP_224559.1| GTP-binding protein LepA [Chlamydophila pneumoniae CWL029]: K-rich region from 567 to 587 corrected with score 41
>CPNE-CWL-01-000351 	gi|15618280|ref|NP_224565.1| hypothetical protein CPn0365 [Chlamydophila pneumoniae CWL029]: I-rich region from 33 to 78 corrected with score 44
>CPNE-CWL-01-000352 	gi|15618281|ref|NP_224566.1| hypothetical protein CPn0366 [Chlamydophila pneumoniae CWL029]: V-rich region from 46 to 110 corrected with score 40
>CPNE-CWL-01-000356 	gi|15618285|ref|NP_224570.1| hypothetical protein CPn0370 [Chlamydophila pneumoniae CWL029]: P-rich region from 83 to 127 corrected with score 46
>CPNE-CWL-01-000357 	gi|15618286|ref|NP_224571.1| hypothetical protein CPn0371 [Chlamydophila pneumoniae CWL029]: I-rich region from 41 to 97 corrected with score 56
>CPNE-CWL-01-000361 	gi|15618290|ref|NP_224575.1| hypothetical protein CPn0375 [Chlamydophila pneumoniae CWL029]: L-rich region from 42 to 103 corrected with score 43
>CPNE-CWL-01-000365 	gi|15618294|ref|NP_224579.1| hypothetical protein CPn0379 [Chlamydophila pneumoniae CWL029]: E-rich region from 27 to 127 corrected with score 54
>CPNE-CWL-01-000370 	gi|15618299|ref|NP_224584.1| histone-like protein 2 [Chlamydophila pneumoniae CWL029]: K-rich region from 5 to 157 corrected with score 126
>CPNE-CWL-01-000370 	gi|15618299|ref|NP_224584.1| histone-like protein 2 [Chlamydophila pneumoniae CWL029]: A-rich region from 12 to 128 corrected with score 60
>CPNE-CWL-01-000390 	gi|15618319|ref|NP_224604.1| hypothetical protein CPn0404 [Chlamydophila pneumoniae CWL029]: P-rich region from 266 to 290 corrected with score 41
>CPNE-CWL-01-000391 	gi|15618320|ref|NP_224605.1| hypothetical protein CPn0405 [Chlamydophila pneumoniae CWL029]: S-rich region from 30 to 202 corrected with score 103
>CPNE-CWL-01-000406 	gi|15618335|ref|NP_224620.1| hypothetical protein CPn0420 [Chlamydophila pneumoniae CWL029]: C-rich region from 10 to 16 corrected with score 42
>CPNE-CWL-01-000408 	gi|15618337|ref|NP_224622.1| hypothetical protein CPn0422 [Chlamydophila pneumoniae CWL029]: D-rich region from 129 to 144 corrected with score 54
>CPNE-CWL-01-000423 	gi|15618352|ref|NP_224637.1| ClpC protease [Chlamydophila pneumoniae CWL029]: S-rich region from 153 to 186 corrected with score 61
>CPNE-CWL-01-000423 	gi|15618352|ref|NP_224637.1| ClpC protease [Chlamydophila pneumoniae CWL029]: E-rich region from 441 to 498 corrected with score 55
>CPNE-CWL-01-000425 	gi|15618354|ref|NP_224639.1| hypothetical protein CPn0439 [Chlamydophila pneumoniae CWL029]: I-rich region from 46 to 99 corrected with score 46
>CPNE-CWL-01-000428 	gi|15618357|ref|NP_224642.1| hypothetical protein CPn0442 [Chlamydophila pneumoniae CWL029]: P-rich region from 143 to 157 corrected with score 53
>CPNE-CWL-01-000429 	gi|15618358|ref|NP_224643.1| hypothetical protein CPn0443 [Chlamydophila pneumoniae CWL029]: S-rich region from 195 to 404 corrected with score 77
>CPNE-CWL-01-000429 	gi|15618358|ref|NP_224643.1| hypothetical protein CPn0443 [Chlamydophila pneumoniae CWL029]: Q-rich region from 346 to 380 corrected with score 62
>CPNE-CWL-01-000430 	gi|15618359|ref|NP_224644.1| polymorphic Outer membrane protein G/I family [Chlamydophila pneumoniae CWL029]: S-rich region from 10 to 811 corrected with score 330
>CPNE-CWL-01-000430 	gi|15618359|ref|NP_224644.1| polymorphic Outer membrane protein G/I family [Chlamydophila pneumoniae CWL029]: T-rich region from 45 to 680 corrected with score 100
>CPNE-CWL-01-000430 	gi|15618359|ref|NP_224644.1| polymorphic Outer membrane protein G/I family [Chlamydophila pneumoniae CWL029]: P-rich region from 862 to 884 corrected with score 40
>CPNE-CWL-01-000431 	gi|15618360|ref|NP_224645.1| polymorphic Outer membrane protein G family [Chlamydophila pneumoniae CWL029]: S-rich region from 2 to 593 corrected with score 129
>CPNE-CWL-01-000432 	gi|15618361|ref|NP_224646.1| polymorphic Outer membrane protein G family [Chlamydophila pneumoniae CWL029]: S-rich region from 21 to 555 corrected with score 180
>CPNE-CWL-01-000433 	gi|15618362|ref|NP_224647.1| polymorphic Outer membrane protein G/I family [Chlamydophila pneumoniae CWL029]: S-rich region from 11 to 527 corrected with score 150
>CPNE-CWL-01-000435 	gi|15618364|ref|NP_224649.1| polymorphic Outer membrane protein G family [Chlamydophila pneumoniae CWL029]: S-rich region from 11 to 502 corrected with score 134
>CPNE-CWL-01-000437 	gi|15618366|ref|NP_224651.1| polymorphic Outer membrane protein G family [Chlamydophila pneumoniae CWL029]: S-rich region from 64 to 490 corrected with score 94
>CPNE-CWL-01-000437 	gi|15618366|ref|NP_224651.1| polymorphic Outer membrane protein G family [Chlamydophila pneumoniae CWL029]: P-rich region from 295 to 326 corrected with score 55
>CPNE-CWL-01-000437 	gi|15618366|ref|NP_224651.1| polymorphic Outer membrane protein G family [Chlamydophila pneumoniae CWL029]: T-rich region from 475 to 649 corrected with score 50
>CPNE-CWL-01-000438 	gi|15618367|ref|NP_224652.1| polymorphic Outer membrane protein H family [Chlamydophila pneumoniae CWL029]: S-rich region from 46 to 458 corrected with score 84
>CPNE-CWL-01-000450 	gi|15618379|ref|NP_224664.1| polymorphic Outer membrane protein E family [Chlamydophila pneumoniae CWL029]: S-rich region from 97 to 351 corrected with score 52
>CPNE-CWL-01-000450 	gi|15618379|ref|NP_224664.1| polymorphic Outer membrane protein E family [Chlamydophila pneumoniae CWL029]: T-rich region from 467 to 534 corrected with score 48
>CPNE-CWL-01-000451 	gi|15618380|ref|NP_224665.1| polymorphic Outer membrane protein E family [Chlamydophila pneumoniae CWL029]: N-rich region from 129 to 288 corrected with score 60
>CPNE-CWL-01-000453 	gi|15618382|ref|NP_224667.1| polymorphic Outer membrane protein E/F family [Chlamydophila pneumoniae CWL029]: S-rich region from 672 to 800 corrected with score 54
>CPNE-CWL-01-000454 	gi|15618383|ref|NP_224668.1| hypothetical protein CPn0472 [Chlamydophila pneumoniae CWL029]: S-rich region from 2 to 637 corrected with score 119
>CPNE-CWL-01-000455 	gi|15618384|ref|NP_224669.1| hypothetical protein CPn0473 [Chlamydophila pneumoniae CWL029]: S-rich region from 7 to 487 corrected with score 110
>CPNE-CWL-01-000456 	gi|15618385|ref|NP_224670.1| hypothetical protein CPn0474 [Chlamydophila pneumoniae CWL029]: V-rich region from 57 to 94 corrected with score 43
>CPNE-CWL-01-000465 	gi|15618394|ref|NP_224679.1| hypothetical protein CPn0483 [Chlamydophila pneumoniae CWL029]: P-rich region from 77 to 164 corrected with score 174
>CPNE-CWL-01-000481 	gi|15618410|ref|NP_224695.1| hypothetical protein CPn0499 [Chlamydophila pneumoniae CWL029]: E-rich region from 316 to 384 corrected with score 55
>CPNE-CWL-01-000481 	gi|15618410|ref|NP_224695.1| hypothetical protein CPn0499 [Chlamydophila pneumoniae CWL029]: S-rich region from 2 to 86 corrected with score 45
>CPNE-CWL-01-000484 	gi|15618413|ref|NP_224698.1| HSP-70 cofactor [Chlamydophila pneumoniae CWL029]: E-rich region from 7 to 63 corrected with score 55
>CPNE-CWL-01-000485 	gi|15618414|ref|NP_224699.1| molecular chaperone DnaK [Chlamydophila pneumoniae CWL029]: E-rich region from 493 to 660 corrected with score 64
>CPNE-CWL-01-000485 	gi|15618414|ref|NP_224699.1| molecular chaperone DnaK [Chlamydophila pneumoniae CWL029]: S-rich region from 599 to 643 corrected with score 46
>CPNE-CWL-01-000486 	gi|15618415|ref|NP_224700.1| ribonuclease family protein [Chlamydophila pneumoniae CWL029]: K-rich region from 655 to 674 corrected with score 43
>CPNE-CWL-01-000498 	gi|15618427|ref|NP_224712.1| hypothetical protein CPn0516 [Chlamydophila pneumoniae CWL029]: S-rich region from 150 to 214 corrected with score 42
>CPNE-CWL-01-000499 	gi|15618428|ref|NP_224713.1| hypothetical protein CPn0517 [Chlamydophila pneumoniae CWL029]: I-rich region from 40 to 88 corrected with score 42
>CPNE-CWL-01-000507 	gi|15618436|ref|NP_224721.1| hypothetical protein CPn0525 [Chlamydophila pneumoniae CWL029]: E-rich region from 25 to 174 corrected with score 56
>CPNE-CWL-01-000509 	gi|15618438|ref|NP_224723.1| branched-chain alpha-keto acid dehydrogenase subunit E2 [Chlamydophila pneumoniae CWL029]: S-rich region from 82 to 108 corrected with score 41
>CPNE-CWL-01-000522 	gi|15618451|ref|NP_224736.1| polymorphic membrane protein B family [Chlamydophila pneumoniae CWL029]: S-rich region from 24 to 1270 corrected with score 354
>CPNE-CWL-01-000522 	gi|15618451|ref|NP_224736.1| polymorphic membrane protein B family [Chlamydophila pneumoniae CWL029]: A-rich region from 529 to 570 corrected with score 43
>CPNE-CWL-01-000525 	gi|15618454|ref|NP_224739.1| metal transport protein [Chlamydophila pneumoniae CWL029]: L-rich region from 183 to 239 corrected with score 51
>CPNE-CWL-01-000526 	gi|15618455|ref|NP_224740.1| GTPase ObgE [Chlamydophila pneumoniae CWL029]: G-rich region from 31 to 43 corrected with score 43
>CPNE-CWL-01-000534 	gi|15618463|ref|NP_224748.1| 30S ribosomal protein S12 [Chlamydophila pneumoniae CWL029]: K-rich region from 9 to 51 corrected with score 41
>CPNE-CWL-01-000546 	gi|15618475|ref|NP_224760.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila pneumoniae CWL029]: S-rich region from 136 to 244 corrected with score 48
>CPNE-CWL-01-000554 	gi|15618483|ref|NP_224768.1| hypothetical protein CPn0572 [Chlamydophila pneumoniae CWL029]: S-rich region from 6 to 751 corrected with score 229
>CPNE-CWL-01-000554 	gi|15618483|ref|NP_224768.1| hypothetical protein CPn0572 [Chlamydophila pneumoniae CWL029]: T-rich region from 554 to 664 corrected with score 111
>CPNE-CWL-01-000554 	gi|15618483|ref|NP_224768.1| hypothetical protein CPn0572 [Chlamydophila pneumoniae CWL029]: T-rich region from 9 to 50 corrected with score 61
>CPNE-CWL-01-000554 	gi|15618483|ref|NP_224768.1| hypothetical protein CPn0572 [Chlamydophila pneumoniae CWL029]: P-rich region from 449 to 461 corrected with score 48
>CPNE-CWL-01-000558 	gi|15618982|ref|NP_224772.1| peptide chain release factor 2 [Chlamydophila pneumoniae CWL029]: Q-rich region from 274 to 315 corrected with score 40
>CPNE-CWL-01-000567 	gi|15618495|ref|NP_224781.1| hypothetical protein CPn0585 [Chlamydophila pneumoniae CWL029]: Q-rich region from 226 to 650 corrected with score 146
>CPNE-CWL-01-000567 	gi|15618495|ref|NP_224781.1| hypothetical protein CPn0585 [Chlamydophila pneumoniae CWL029]: E-rich region from 377 to 580 corrected with score 46
>CPNE-CWL-01-000596 	gi|15618524|ref|NP_224810.1| ADP/ATP translocase [Chlamydophila pneumoniae CWL029]: I-rich region from 467 to 499 corrected with score 43
>CPNE-CWL-01-000604 	gi|15618532|ref|NP_224818.1| hypothetical protein CPn0622 [Chlamydophila pneumoniae CWL029]: Q-rich region from 69 to 241 corrected with score 82
>CPNE-CWL-01-000605 	gi|15618533|ref|NP_224819.1| hypothetical protein CPn0623 [Chlamydophila pneumoniae CWL029]: E-rich region from 109 to 191 corrected with score 66
>CPNE-CWL-01-000605 	gi|15618533|ref|NP_224819.1| hypothetical protein CPn0623 [Chlamydophila pneumoniae CWL029]: K-rich region from 127 to 157 corrected with score 51
>CPNE-CWL-01-000611 	gi|15618539|ref|NP_224825.1| preprotein translocase subunit SecY [Chlamydophila pneumoniae CWL029]: I-rich region from 230 to 251 corrected with score 44
>CPNE-CWL-01-000612 	gi|15618540|ref|NP_224826.1| 50S ribosomal protein L15 [Chlamydophila pneumoniae CWL029]: G-rich region from 21 to 55 corrected with score 42
>CPNE-CWL-01-000647 	gi|15618575|ref|NP_224861.1| hexosphosphate transport [Chlamydophila pneumoniae CWL029]: W-rich region from 127 to 139 corrected with score 40
>CPNE-CWL-01-000647 	gi|15618575|ref|NP_224861.1| hexosphosphate transport [Chlamydophila pneumoniae CWL029]: Y-rich region from 27 to 47 corrected with score 40
>CPNE-CWL-01-000654 	gi|15618582|ref|NP_224868.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae CWL029]: H-rich region from 172 to 187 corrected with score 41
>CPNE-CWL-01-000659 	gi|15618587|ref|NP_224873.1| hypothetical protein CPn0677 [Chlamydophila pneumoniae CWL029]: S-rich region from 18 to 159 corrected with score 65
>CPNE-CWL-01-000659 	gi|15618587|ref|NP_224873.1| hypothetical protein CPn0677 [Chlamydophila pneumoniae CWL029]: P-rich region from 80 to 122 corrected with score 45
>CPNE-CWL-01-000660 	gi|15618588|ref|NP_224874.1| hypothetical protein CPn0678 [Chlamydophila pneumoniae CWL029]: P-rich region from 137 to 189 corrected with score 52
>CPNE-CWL-01-000674 	gi|15618602|ref|NP_224888.1| cysteine desulfurase activator complex subunit SufB [Chlamydophila pneumoniae CWL029]: S-rich region from 334 to 428 corrected with score 41
>CPNE-CWL-01-000678 	gi|15618606|ref|NP_224892.1| 30S ribosomal protein S2 [Chlamydophila pneumoniae CWL029]: E-rich region from 251 to 266 corrected with score 40
>CPNE-CWL-01-000684 	gi|15618612|ref|NP_224898.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydophila pneumoniae CWL029]: K-rich region from 52 to 252 corrected with score 43
>CPNE-CWL-01-000684 	gi|15618612|ref|NP_224898.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydophila pneumoniae CWL029]: T-rich region from 732 to 802 corrected with score 40
>CPNE-CWL-01-000687 	gi|15618615|ref|NP_224901.1| hypothetical protein CPn0705 [Chlamydophila pneumoniae CWL029]: E-rich region from 22 to 87 corrected with score 57
>CPNE-CWL-01-000687 	gi|15618615|ref|NP_224901.1| hypothetical protein CPn0705 [Chlamydophila pneumoniae CWL029]: E-rich region from 249 to 277 corrected with score 47
>CPNE-CWL-01-000688 	gi|15618616|ref|NP_224902.1| hypothetical protein CPn0706 [Chlamydophila pneumoniae CWL029]: E-rich region from 13 to 149 corrected with score 97
>CPNE-CWL-01-000694 	gi|15618622|ref|NP_224908.1| FHA domain-containing protein [Chlamydophila pneumoniae CWL029]: E-rich region from 114 to 359 corrected with score 168
>CPNE-CWL-01-000694 	gi|15618622|ref|NP_224908.1| FHA domain-containing protein [Chlamydophila pneumoniae CWL029]: S-rich region from 118 to 363 corrected with score 54
>CPNE-CWL-01-000694 	gi|15618622|ref|NP_224908.1| FHA domain-containing protein [Chlamydophila pneumoniae CWL029]: E-rich region from 518 to 539 corrected with score 43
>CPNE-CWL-01-000708 	gi|15618636|ref|NP_224922.1| hypothetical protein CPn0726 [Chlamydophila pneumoniae CWL029]: S-rich region from 336 to 475 corrected with score 41
>CPNE-CWL-01-000709 	gi|15618637|ref|NP_224923.1| hypothetical protein CPn0727 [Chlamydophila pneumoniae CWL029]: Q-rich region from 818 to 847 corrected with score 45
>CPNE-CWL-01-000710 	gi|15618638|ref|NP_224924.1| hypothetical protein CPn0728 [Chlamydophila pneumoniae CWL029]: S-rich region from 22 to 632 corrected with score 136
>CPNE-CWL-01-000710 	gi|15618638|ref|NP_224924.1| hypothetical protein CPn0728 [Chlamydophila pneumoniae CWL029]: A-rich region from 391 to 457 corrected with score 73
>CPNE-CWL-01-000724 	gi|15618652|ref|NP_224938.1| hypothetical protein CPn0742 [Chlamydophila pneumoniae CWL029]: K-rich region from 119 to 138 corrected with score 45
>CPNE-CWL-01-000728 	gi|15618656|ref|NP_224942.1| hypothetical protein CPn0746 [Chlamydophila pneumoniae CWL029]: H-rich region from 274 to 279 corrected with score 40
>CPNE-CWL-01-000736 	gi|15618664|ref|NP_224950.1| hypothetical protein CPn0755 [Chlamydophila pneumoniae CWL029]: Q-rich region from 59 to 200 corrected with score 52
>CPNE-CWL-01-000750 	gi|15618678|ref|NP_224964.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila pneumoniae CWL029]: K-rich region from 737 to 784 corrected with score 71
>CPNE-CWL-01-000750 	gi|15618678|ref|NP_224964.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila pneumoniae CWL029]: E-rich region from 437 to 470 corrected with score 43
>CPNE-CWL-01-000764 	gi|15618692|ref|NP_224978.1| hypothetical protein CPn0783 [Chlamydophila pneumoniae CWL029]: P-rich region from 46 to 121 corrected with score 64
>CPNE-CWL-01-000789 	gi|15618717|ref|NP_225003.1| hypothetical protein CPn0808 [Chlamydophila pneumoniae CWL029]: S-rich region from 2 to 441 corrected with score 213
>CPNE-CWL-01-000789 	gi|15618717|ref|NP_225003.1| hypothetical protein CPn0808 [Chlamydophila pneumoniae CWL029]: A-rich region from 177 to 310 corrected with score 89
>CPNE-CWL-01-000790 	gi|15618718|ref|NP_225004.1| hypothetical protein CPn0809 [Chlamydophila pneumoniae CWL029]: A-rich region from 56 to 487 corrected with score 150
>CPNE-CWL-01-000790 	gi|15618718|ref|NP_225004.1| hypothetical protein CPn0809 [Chlamydophila pneumoniae CWL029]: S-rich region from 2 to 160 corrected with score 65
>CPNE-CWL-01-000792 	gi|15618720|ref|NP_225006.1| low calcium response protein H [Chlamydophila pneumoniae CWL029]: K-rich region from 186 to 231 corrected with score 48
>CPNE-CWL-01-000804 	gi|15618732|ref|NP_225018.1| Yop proteins translocation protein T [Chlamydophila pneumoniae CWL029]: M-rich region from 165 to 282 corrected with score 45
>CPNE-CWL-01-000806 	gi|15618734|ref|NP_225020.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]: L-rich region from 93 to 121 corrected with score 43
>CPNE-CWL-01-000806 	gi|15618734|ref|NP_225020.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]: L-rich region from 249 to 303 corrected with score 42
>CPNE-CWL-01-000809 	gi|15618737|ref|NP_225023.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae CWL029]: E-rich region from 287 to 333 corrected with score 50
>CPNE-CWL-01-000823 	gi|15618753|ref|NP_225039.1| GTP-binding protein EngA [Chlamydophila pneumoniae CWL029]: E-rich region from 166 to 187 corrected with score 51
>CPNE-CWL-01-000828 	gi|15618758|ref|NP_225044.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae CWL029]: E-rich region from 109 to 144 corrected with score 48
>CPNE-CWL-01-000831 	gi|15618761|ref|NP_225047.1| hypothetical protein CPn0852 [Chlamydophila pneumoniae CWL029]: Q-rich region from 707 to 742 corrected with score 46
>CPNE-CWL-01-000833 	gi|15618763|ref|NP_225049.1| Outer membrane protein B [Chlamydophila pneumoniae CWL029]: T-rich region from 87 to 137 corrected with score 52
>CPNE-CWL-01-000855 	gi|15618785|ref|NP_225071.1| D-alanine/glycine permease [Chlamydophila pneumoniae CWL029]: V-rich region from 295 to 321 corrected with score 42
>CPNE-CWL-01-000859 	gi|15618789|ref|NP_225075.1| cell division protein FtsK [Chlamydophila pneumoniae CWL029]: F-rich region from 57 to 84 corrected with score 45
>CPNE-CWL-01-000860 	gi|15618790|ref|NP_225076.1| hypothetical protein CPn0881 [Chlamydophila pneumoniae CWL029]: S-rich region from 6 to 87 corrected with score 45
>CPNE-CWL-01-000865 	gi|15618795|ref|NP_225081.1| histone-like developmental protein [Chlamydophila pneumoniae CWL029]: K-rich region from 4 to 123 corrected with score 110
>CPNE-CWL-01-000865 	gi|15618795|ref|NP_225081.1| histone-like developmental protein [Chlamydophila pneumoniae CWL029]: A-rich region from 67 to 109 corrected with score 40
>CPNE-CWL-01-000875 	gi|15618805|ref|NP_225091.1| hypothetical protein CPn0896 [Chlamydophila pneumoniae CWL029]: K-rich region from 2 to 36 corrected with score 45
>CPNE-CWL-01-000891 	gi|15618821|ref|NP_225107.1| hypothetical protein CPn0912 [Chlamydophila pneumoniae CWL029]: Q-rich region from 361 to 542 corrected with score 43
>CPNE-CWL-01-000904 	gi|15618834|ref|NP_225120.1| hypothetical protein CPn0925 [Chlamydophila pneumoniae CWL029]: P-rich region from 54 to 66 corrected with score 40
>CPNE-CWL-01-000914 	gi|15618844|ref|NP_225130.1| 50S ribosomal protein L34 [Chlamydophila pneumoniae CWL029]: R-rich region from 2 to 40 corrected with score 47
>CPNE-CWL-01-000916 	gi|15618846|ref|NP_225132.1| 30S ribosomal protein S14 [Chlamydophila pneumoniae CWL029]: K-rich region from 3 to 53 corrected with score 41
>CPNE-CWL-01-000940 	gi|15618870|ref|NP_225156.1| putative outer membrane protein D [Chlamydophila pneumoniae CWL029]: S-rich region from 125 to 933 corrected with score 82
>CPNE-CWL-01-000949 	gi|15618879|ref|NP_225165.1| transport permease [Chlamydophila pneumoniae CWL029]: I-rich region from 141 to 181 corrected with score 42
>CPNE-CWL-01-000959 	gi|15618889|ref|NP_225175.1| zinc metalloprotease [Chlamydophila pneumoniae CWL029]: E-rich region from 462 to 508 corrected with score 42
>CPNE-CWL-01-000968 	gi|15618898|ref|NP_225184.1| translation initiation factor IF-3 [Chlamydophila pneumoniae CWL029]: K-rich region from 71 to 117 corrected with score 41
>CPNE-CWL-01-000969 	gi|15618899|ref|NP_225185.1| 50S ribosomal protein L35 [Chlamydophila pneumoniae CWL029]: K-rich region from 3 to 47 corrected with score 44
>CPNE-CWL-01-000972 	gi|15618902|ref|NP_225188.1| hypothetical protein CPn0994 [Chlamydophila pneumoniae CWL029]: E-rich region from 94 to 142 corrected with score 42
>CPNE-CWL-01-000982 	gi|15618912|ref|NP_225198.1| hypothetical protein CPn1004 [Chlamydophila pneumoniae CWL029]: Q-rich region from 68 to 149 corrected with score 58
>CPNE-CWL-01-000983 	gi|15618913|ref|NP_225199.1| hypothetical protein CPn1005 [Chlamydophila pneumoniae CWL029]: N-rich region from 96 to 147 corrected with score 41
>CPNE-CWL-01-000984 	gi|15618914|ref|NP_225200.1| hypothetical protein CPn1006 [Chlamydophila pneumoniae CWL029]: Q-rich region from 43 to 141 corrected with score 52
>CPNE-CWL-01-000986 	gi|15618916|ref|NP_225202.1| hypothetical protein CPn1008 [Chlamydophila pneumoniae CWL029]: E-rich region from 131 to 424 corrected with score 42
>CPNE-CWL-01-000997 	gi|15618927|ref|NP_225213.1| hypothetical protein CPn1019 [Chlamydophila pneumoniae CWL029]: S-rich region from 92 to 290 corrected with score 118
>CPNE-CWL-01-000997 	gi|15618927|ref|NP_225213.1| hypothetical protein CPn1019 [Chlamydophila pneumoniae CWL029]: Q-rich region from 160 to 286 corrected with score 74
>CPNE-CWL-01-000998 	gi|15618928|ref|NP_225214.1| hypothetical protein CPn1020 [Chlamydophila pneumoniae CWL029]: Q-rich region from 89 to 248 corrected with score 64
>CPNE-CWL-01-001000 	gi|15618930|ref|NP_225216.1| hypothetical protein CPn1022 [Chlamydophila pneumoniae CWL029]: Q-rich region from 99 to 264 corrected with score 118
>CPNE-CWL-01-001000 	gi|15618930|ref|NP_225216.1| hypothetical protein CPn1022 [Chlamydophila pneumoniae CWL029]: S-rich region from 103 to 228 corrected with score 71
>CPNE-CWL-01-001000 	gi|15618930|ref|NP_225216.1| hypothetical protein CPn1022 [Chlamydophila pneumoniae CWL029]: K-rich region from 217 to 264 corrected with score 47
>CPNE-CWL-01-001001 	gi|15618931|ref|NP_225217.1| hypothetical protein CPn1023 [Chlamydophila pneumoniae CWL029]: Y-rich region from 56 to 74 corrected with score 52
>CPNE-CWL-01-001005 	gi|15618935|ref|NP_225221.1| hypothetical protein CPn1027 [Chlamydophila pneumoniae CWL029]: I-rich region from 33 to 93 corrected with score 46
>CPNE-CWL-01-001032 	gi|15618962|ref|NP_225248.1| hypothetical protein CPn1054 [Chlamydophila pneumoniae CWL029]: E-rich region from 392 to 567 corrected with score 71
>CPNE-CWL-01-001034 	gi|15618964|ref|NP_225250.1| hypothetical protein CPn1056 [Chlamydophila pneumoniae CWL029]: K-rich region from 155 to 225 corrected with score 49
>CPNE-CWL-01-001049 	gi|15618979|ref|NP_225265.1| hypothetical protein CPn1071 [Chlamydophila pneumoniae CWL029]: D-rich region from 441 to 454 corrected with score 43
>CPNE-J13-01-000006 	gi|15835542|ref|NP_300066.1| hypothetical protein CPj0007 [Chlamydophila pneumoniae J138]: E-rich region from 485 to 707 corrected with score 69
>CPNE-J13-01-000006 	gi|15835542|ref|NP_300066.1| hypothetical protein CPj0007 [Chlamydophila pneumoniae J138]: I-rich region from 146 to 170 corrected with score 41
>CPNE-J13-01-000008 	gi|15835544|ref|NP_300068.1| hypothetical protein CPj0009 [Chlamydophila pneumoniae J138]: E-rich region from 13 to 190 corrected with score 72
>CPNE-J13-01-000009 	gi|15835545|ref|NP_300069.1| hypothetical protein CPj0010 [Chlamydophila pneumoniae J138]: E-rich region from 355 to 530 corrected with score 71
>CPNE-J13-01-000010 	gi|15835546|ref|NP_300070.1| hypothetical protein CPj0011 [Chlamydophila pneumoniae J138]: I-rich region from 33 to 85 corrected with score 44
>CPNE-J13-01-000011 	gi|15835547|ref|NP_300071.1| hypothetical protein CPj0012 [Chlamydophila pneumoniae J138]: E-rich region from 99 to 273 corrected with score 78
>CPNE-J13-01-000011 	gi|15835547|ref|NP_300071.1| hypothetical protein CPj0012 [Chlamydophila pneumoniae J138]: K-rich region from 463 to 522 corrected with score 45
>CPNE-J13-01-000012 	gi|15835548|ref|NP_300072.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: S-rich region from 17 to 344 corrected with score 115
>CPNE-J13-01-000014 	gi|15835550|ref|NP_300074.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: S-rich region from 28 to 171 corrected with score 59
>CPNE-J13-01-000015 	gi|15835551|ref|NP_300075.1| Pmp_3 [Chlamydophila pneumoniae J138]: S-rich region from 4 to 402 corrected with score 122
>CPNE-J13-01-000016 	gi|15835552|ref|NP_300076.1| polymorphic outer membrane protein G family [Chlamydophila pneumoniae J138]: S-rich region from 3 to 407 corrected with score 123
>CPNE-J13-01-000019 	gi|15835555|ref|NP_300079.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: S-rich region from 14 to 452 corrected with score 67
>CPNE-J13-01-000024 	gi|15835560|ref|NP_300084.1| ABC transporter protein ATPase [Chlamydophila pneumoniae J138]: K-rich region from 240 to 301 corrected with score 41
>CPNE-J13-01-000027 	gi|15835563|ref|NP_300087.1| hypothetical protein CPj0026 [Chlamydophila pneumoniae J138]: S-rich region from 90 to 268 corrected with score 82
>CPNE-J13-01-000027 	gi|15835563|ref|NP_300087.1| hypothetical protein CPj0026 [Chlamydophila pneumoniae J138]: K-rich region from 183 to 245 corrected with score 50
>CPNE-J13-01-000027 	gi|15835563|ref|NP_300087.1| hypothetical protein CPj0026 [Chlamydophila pneumoniae J138]: I-rich region from 34 to 81 corrected with score 47
>CPNE-J13-01-000028 	gi|15835564|ref|NP_300088.1| Lon ATP-dependent protease [Chlamydophila pneumoniae J138]: E-rich region from 13 to 37 corrected with score 40
>CPNE-J13-01-000029 	gi|15835565|ref|NP_300089.1| hypothetical protein CPj0028 [Chlamydophila pneumoniae J138]: I-rich region from 73 to 101 corrected with score 43
>CPNE-J13-01-000032 	gi|15835568|ref|NP_300092.1| 30S ribosomal protein S21 [Chlamydophila pneumoniae J138]: K-rich region from 20 to 58 corrected with score 40
>CPNE-J13-01-000033 	gi|15835569|ref|NP_300093.1| heat shock protein J [Chlamydophila pneumoniae J138]: G-rich region from 67 to 133 corrected with score 61
>CPNE-J13-01-000035 	gi|15835571|ref|NP_300095.1| hypothetical protein CPj0034 [Chlamydophila pneumoniae J138]: P-rich region from 108 to 146 corrected with score 79
>CPNE-J13-01-000042 	gi|15835578|ref|NP_300102.1| hypothetical protein CPj0041 [Chlamydophila pneumoniae J138]: E-rich region from 255 to 447 corrected with score 61
>CPNE-J13-01-000044 	gi|15835580|ref|NP_300104.1| hypothetical protein CPj0043 [Chlamydophila pneumoniae J138]: E-rich region from 392 to 536 corrected with score 58
>CPNE-J13-01-000044 	gi|15835580|ref|NP_300104.1| hypothetical protein CPj0043 [Chlamydophila pneumoniae J138]: P-rich region from 4 to 14 corrected with score 41
>CPNE-J13-01-000045 	gi|15835581|ref|NP_300105.1| hypothetical protein CPj0044 [Chlamydophila pneumoniae J138]: K-rich region from 43 to 97 corrected with score 50
>CPNE-J13-01-000046 	gi|15835582|ref|NP_300106.1| hypothetical protein CPj0045 [Chlamydophila pneumoniae J138]: E-rich region from 351 to 460 corrected with score 62
>CPNE-J13-01-000046 	gi|15835582|ref|NP_300106.1| hypothetical protein CPj0045 [Chlamydophila pneumoniae J138]: K-rich region from 660 to 713 corrected with score 47
>CPNE-J13-01-000049 	gi|15835585|ref|NP_300109.1| hypothetical protein CPj0049 [Chlamydophila pneumoniae J138]: L-rich region from 105 to 139 corrected with score 49
>CPNE-J13-01-000050 	gi|15835586|ref|NP_300110.1| hypothetical protein CPj0050 [Chlamydophila pneumoniae J138]: L-rich region from 53 to 76 corrected with score 49
>CPNE-J13-01-000062 	gi|15835598|ref|NP_300122.1| hypothetical protein CPj0062 [Chlamydophila pneumoniae J138]: S-rich region from 3 to 424 corrected with score 91
>CPNE-J13-01-000062 	gi|15835598|ref|NP_300122.1| hypothetical protein CPj0062 [Chlamydophila pneumoniae J138]: K-rich region from 45 to 120 corrected with score 48
>CPNE-J13-01-000064 	gi|15835600|ref|NP_300124.1| hypothetical protein CPj0064 [Chlamydophila pneumoniae J138]: L-rich region from 47 to 68 corrected with score 40
>CPNE-J13-01-000065 	gi|15835601|ref|NP_300125.1| hypothetical protein CPj0065 [Chlamydophila pneumoniae J138]: V-rich region from 240 to 291 corrected with score 43
>CPNE-J13-01-000067 	gi|15835603|ref|NP_300127.1| hypothetical protein CPj0067 [Chlamydophila pneumoniae J138]: I-rich region from 34 to 83 corrected with score 49
>CPNE-J13-01-000068 	gi|15835604|ref|NP_300128.1| hypothetical protein CPj0068 [Chlamydophila pneumoniae J138]: E-rich region from 25 to 99 corrected with score 53
>CPNE-J13-01-000104 	gi|15835640|ref|NP_300164.1| hypothetical protein CPj0104 [Chlamydophila pneumoniae J138]: S-rich region from 240 to 271 corrected with score 40
>CPNE-J13-01-000125 	gi|15835661|ref|NP_300185.1| hypothetical protein CPj0125 [Chlamydophila pneumoniae J138]: E-rich region from 29 to 170 corrected with score 56
>CPNE-J13-01-000126 	gi|15835662|ref|NP_300186.1| hypothetical protein CPj0126 [Chlamydophila pneumoniae J138]: E-rich region from 357 to 463 corrected with score 48
>CPNE-J13-01-000129 	gi|15835665|ref|NP_300189.1| hypothetical protein CPj0130 [Chlamydophila pneumoniae J138]: L-rich region from 29 to 77 corrected with score 47
>CPNE-J13-01-000130 	gi|15835666|ref|NP_300190.1| hypothetical protein CPj0131 [Chlamydophila pneumoniae J138]: L-rich region from 34 to 81 corrected with score 48
>CPNE-J13-01-000143 	gi|15835679|ref|NP_300203.1| Clp protease ATPase [Chlamydophila pneumoniae J138]: E-rich region from 412 to 534 corrected with score 64
>CPNE-J13-01-000146 	gi|15835682|ref|NP_300206.1| hypothetical protein CPj0147 [Chlamydophila pneumoniae J138]: A-rich region from 2 to 88 corrected with score 43
>CPNE-J13-01-000149 	gi|15835685|ref|NP_300209.1| hypothetical protein CPj0150 [Chlamydophila pneumoniae J138]: E-rich region from 1398 to 1509 corrected with score 56
>CPNE-J13-01-000165 	gi|15835701|ref|NP_300225.1| hypothetical protein CPj0166 [Chlamydophila pneumoniae J138]: L-rich region from 29 to 82 corrected with score 63
>CPNE-J13-01-000173 	gi|15835709|ref|NP_300233.1| hypothetical protein CPj0174 [Chlamydophila pneumoniae J138]: I-rich region from 50 to 107 corrected with score 50
>CPNE-J13-01-000175 	gi|15835711|ref|NP_300235.1| hypothetical protein CPj0176 [Chlamydophila pneumoniae J138]: S-rich region from 121 to 154 corrected with score 41
>CPNE-J13-01-000185 	gi|15835721|ref|NP_300245.1| hypothetical protein CPj0186 [Chlamydophila pneumoniae J138]: Q-rich region from 219 to 336 corrected with score 64
>CPNE-J13-01-000211 	gi|15835747|ref|NP_300271.1| hypothetical protein CPj0212 [Chlamydophila pneumoniae J138]: L-rich region from 41 to 88 corrected with score 42
>CPNE-J13-01-000214 	gi|15835750|ref|NP_300274.1| hypothetical protein CPj0215 [Chlamydophila pneumoniae J138]: L-rich region from 31 to 86 corrected with score 44
>CPNE-J13-01-000224 	gi|15835760|ref|NP_300284.1| hypothetical protein CPj0225 [Chlamydophila pneumoniae J138]: K-rich region from 140 to 223 corrected with score 59
>CPNE-J13-01-000224 	gi|15835760|ref|NP_300284.1| hypothetical protein CPj0225 [Chlamydophila pneumoniae J138]: L-rich region from 32 to 89 corrected with score 43
>CPNE-J13-01-000229 	gi|15835765|ref|NP_300289.1| hypothetical protein CPj0230 [Chlamydophila pneumoniae J138]: K-rich region from 126 to 216 corrected with score 53
>CPNE-J13-01-000239 	gi|15835775|ref|NP_300299.1| hypothetical protein CPj0240 [Chlamydophila pneumoniae J138]: G-rich region from 316 to 364 corrected with score 81
>CPNE-J13-01-000239 	gi|15835775|ref|NP_300299.1| hypothetical protein CPj0240 [Chlamydophila pneumoniae J138]: P-rich region from 366 to 381 corrected with score 52
>CPNE-J13-01-000239 	gi|15835775|ref|NP_300299.1| hypothetical protein CPj0240 [Chlamydophila pneumoniae J138]: A-rich region from 164 to 237 corrected with score 47
>CPNE-J13-01-000241 	gi|15835777|ref|NP_300301.1| hypothetical protein CPj0242 [Chlamydophila pneumoniae J138]: V-rich region from 26 to 57 corrected with score 44
>CPNE-J13-01-000242 	gi|15835778|ref|NP_300302.1| hypothetical protein CPj0243 [Chlamydophila pneumoniae J138]: V-rich region from 19 to 60 corrected with score 40
>CPNE-J13-01-000245 	gi|15835781|ref|NP_300305.1| 30S ribosomal protein S9 [Chlamydophila pneumoniae J138]: K-rich region from 93 to 134 corrected with score 40
>CPNE-J13-01-000259 	gi|15835795|ref|NP_300319.1| protein translocase subunit [Chlamydophila pneumoniae J138]: K-rich region from 15 to 112 corrected with score 41
>CPNE-J13-01-000267 	gi|15835803|ref|NP_300327.1| hypothetical protein CPj0268 [Chlamydophila pneumoniae J138]: N-rich region from 53 to 125 corrected with score 44
>CPNE-J13-01-000276 	gi|15835812|ref|NP_300336.1| hypothetical protein CPj0277 [Chlamydophila pneumoniae J138]: V-rich region from 76 to 136 corrected with score 65
>CPNE-J13-01-000281 	gi|15835817|ref|NP_300341.1| amino acid transporter [Chlamydophila pneumoniae J138]: W-rich region from 81 to 98 corrected with score 40
>CPNE-J13-01-000290 	gi|15835826|ref|NP_300350.1| inclusion membrane protein B [Chlamydophila pneumoniae J138]: V-rich region from 99 to 172 corrected with score 47
>CPNE-J13-01-000291 	gi|15835827|ref|NP_300351.1| inclusion membrane protein C [Chlamydophila pneumoniae J138]: I-rich region from 128 to 151 corrected with score 46
>CPNE-J13-01-000300 	gi|15835836|ref|NP_300360.1| ompH-like outer membrane protein [Chlamydophila pneumoniae J138]: E-rich region from 33 to 144 corrected with score 57
>CPNE-J13-01-000316 	gi|15835852|ref|NP_300376.1| translation initiation factor IF-2 [Chlamydophila pneumoniae J138]: S-rich region from 33 to 110 corrected with score 76
>CPNE-J13-01-000316 	gi|15835852|ref|NP_300376.1| translation initiation factor IF-2 [Chlamydophila pneumoniae J138]: K-rich region from 150 to 295 corrected with score 52
>CPNE-J13-01-000322 	gi|15835858|ref|NP_300382.1| low calcium response D [Chlamydophila pneumoniae J138]: I-rich region from 27 to 141 corrected with score 50
>CPNE-J13-01-000323 	gi|15835859|ref|NP_300383.1| low calcium response E [Chlamydophila pneumoniae J138]: K-rich region from 59 to 91 corrected with score 49
>CPNE-J13-01-000323 	gi|15835859|ref|NP_300383.1| low calcium response E [Chlamydophila pneumoniae J138]: A-rich region from 2 to 36 corrected with score 40
>CPNE-J13-01-000329 	gi|15835865|ref|NP_300389.1| hypothetical protein CPj0330 [Chlamydophila pneumoniae J138]: K-rich region from 51 to 116 corrected with score 74
>CPNE-J13-01-000330 	gi|15835866|ref|NP_300390.1| hypothetical protein CPj0331 [Chlamydophila pneumoniae J138]: S-rich region from 4 to 463 corrected with score 167
>CPNE-J13-01-000330 	gi|15835866|ref|NP_300390.1| hypothetical protein CPj0331 [Chlamydophila pneumoniae J138]: G-rich region from 544 to 562 corrected with score 44
>CPNE-J13-01-000332 	gi|15835868|ref|NP_300392.1| LtuB protein [Chlamydophila pneumoniae J138]: K-rich region from 3 to 72 corrected with score 54
>CPNE-J13-01-000341 	gi|15835877|ref|NP_300401.1| metalloprotease [Chlamydophila pneumoniae J138]: F-rich region from 600 to 620 corrected with score 41
>CPNE-J13-01-000354 	gi|15835890|ref|NP_300414.1| hypothetical protein CPj0357 [Chlamydophila pneumoniae J138]: V-rich region from 30 to 75 corrected with score 40
>CPNE-J13-01-000356 	gi|15835892|ref|NP_300416.1| GTP-binding protein LepA [Chlamydophila pneumoniae J138]: K-rich region from 567 to 587 corrected with score 41
>CPNE-J13-01-000362 	gi|15835898|ref|NP_300422.1| hypothetical protein CPj0365 [Chlamydophila pneumoniae J138]: I-rich region from 33 to 78 corrected with score 44
>CPNE-J13-01-000363 	gi|15835899|ref|NP_300423.1| hypothetical protein CPj0366 [Chlamydophila pneumoniae J138]: V-rich region from 46 to 110 corrected with score 40
>CPNE-J13-01-000367 	gi|15835903|ref|NP_300427.1| hypothetical protein CPj0370 [Chlamydophila pneumoniae J138]: P-rich region from 83 to 127 corrected with score 46
>CPNE-J13-01-000368 	gi|15835904|ref|NP_300428.1| hypothetical protein CPj0371 [Chlamydophila pneumoniae J138]: I-rich region from 41 to 97 corrected with score 56
>CPNE-J13-01-000372 	gi|15835908|ref|NP_300432.1| hypothetical protein CPj0375 [Chlamydophila pneumoniae J138]: L-rich region from 42 to 103 corrected with score 45
>CPNE-J13-01-000376 	gi|15835912|ref|NP_300436.1| hypothetical protein CPj0379 [Chlamydophila pneumoniae J138]: E-rich region from 27 to 127 corrected with score 54
>CPNE-J13-01-000381 	gi|15835917|ref|NP_300441.1| histone-like protein 2 [Chlamydophila pneumoniae J138]: K-rich region from 5 to 157 corrected with score 126
>CPNE-J13-01-000381 	gi|15835917|ref|NP_300441.1| histone-like protein 2 [Chlamydophila pneumoniae J138]: A-rich region from 12 to 128 corrected with score 60
>CPNE-J13-01-000401 	gi|15835937|ref|NP_300461.1| hypothetical protein CPj0404 [Chlamydophila pneumoniae J138]: P-rich region from 266 to 290 corrected with score 41
>CPNE-J13-01-000402 	gi|15835938|ref|NP_300462.1| hypothetical protein CPj0405 [Chlamydophila pneumoniae J138]: S-rich region from 30 to 202 corrected with score 103
>CPNE-J13-01-000417 	gi|15835953|ref|NP_300477.1| hypothetical protein CPj0420 [Chlamydophila pneumoniae J138]: C-rich region from 10 to 16 corrected with score 42
>CPNE-J13-01-000419 	gi|15835955|ref|NP_300479.1| hypothetical protein CPj0422 [Chlamydophila pneumoniae J138]: D-rich region from 129 to 144 corrected with score 54
>CPNE-J13-01-000434 	gi|15835970|ref|NP_300494.1| ClpC protease [Chlamydophila pneumoniae J138]: S-rich region from 153 to 186 corrected with score 61
>CPNE-J13-01-000434 	gi|15835970|ref|NP_300494.1| ClpC protease [Chlamydophila pneumoniae J138]: E-rich region from 441 to 498 corrected with score 55
>CPNE-J13-01-000436 	gi|15835972|ref|NP_300496.1| hypothetical protein CPj0439 [Chlamydophila pneumoniae J138]: I-rich region from 46 to 99 corrected with score 46
>CPNE-J13-01-000439 	gi|15835975|ref|NP_300499.1| hypothetical protein CPj0442 [Chlamydophila pneumoniae J138]: P-rich region from 143 to 157 corrected with score 53
>CPNE-J13-01-000440 	gi|15835976|ref|NP_300500.1| hypothetical protein CPj0443 [Chlamydophila pneumoniae J138]: S-rich region from 195 to 404 corrected with score 77
>CPNE-J13-01-000440 	gi|15835976|ref|NP_300500.1| hypothetical protein CPj0443 [Chlamydophila pneumoniae J138]: Q-rich region from 346 to 380 corrected with score 62
>CPNE-J13-01-000441 	gi|15835977|ref|NP_300501.1| polymorphic outer membrane protein G/I family protein [Chlamydophila pneumoniae J138]: S-rich region from 10 to 680 corrected with score 268
>CPNE-J13-01-000441 	gi|15835977|ref|NP_300501.1| polymorphic outer membrane protein G/I family protein [Chlamydophila pneumoniae J138]: T-rich region from 45 to 549 corrected with score 104
>CPNE-J13-01-000441 	gi|15835977|ref|NP_300501.1| polymorphic outer membrane protein G/I family protein [Chlamydophila pneumoniae J138]: P-rich region from 731 to 753 corrected with score 40
>CPNE-J13-01-000442 	gi|15835978|ref|NP_300502.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: S-rich region from 2 to 593 corrected with score 129
>CPNE-J13-01-000443 	gi|15835979|ref|NP_300503.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: S-rich region from 21 to 555 corrected with score 180
>CPNE-J13-01-000444 	gi|15835980|ref|NP_300504.1| polymorphic outer membrane protein G/I family protein [Chlamydophila pneumoniae J138]: S-rich region from 11 to 527 corrected with score 150
>CPNE-J13-01-000446 	gi|15835982|ref|NP_300506.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: S-rich region from 11 to 517 corrected with score 154
>CPNE-J13-01-000446 	gi|15835982|ref|NP_300506.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: T-rich region from 550 to 598 corrected with score 51
>CPNE-J13-01-000447 	gi|15835983|ref|NP_300507.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: S-rich region from 11 to 502 corrected with score 134
>CPNE-J13-01-000449 	gi|15835985|ref|NP_300509.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: S-rich region from 64 to 490 corrected with score 94
>CPNE-J13-01-000449 	gi|15835985|ref|NP_300509.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: P-rich region from 295 to 326 corrected with score 55
>CPNE-J13-01-000449 	gi|15835985|ref|NP_300509.1| polymorphic outer membrane protein G family protein [Chlamydophila pneumoniae J138]: T-rich region from 475 to 649 corrected with score 50
>CPNE-J13-01-000450 	gi|15835986|ref|NP_300510.1| polymorphic outer membrane protein H family protein [Chlamydophila pneumoniae J138]: S-rich region from 46 to 458 corrected with score 85
>CPNE-J13-01-000461 	gi|15835997|ref|NP_300521.1| polymorphic outer membrane protein E family protein [Chlamydophila pneumoniae J138]: S-rich region from 97 to 351 corrected with score 52
>CPNE-J13-01-000461 	gi|15835997|ref|NP_300521.1| polymorphic outer membrane protein E family protein [Chlamydophila pneumoniae J138]: T-rich region from 467 to 534 corrected with score 48
>CPNE-J13-01-000462 	gi|15835998|ref|NP_300522.1| polymorphic outer membrane protein E family protein [Chlamydophila pneumoniae J138]: N-rich region from 129 to 288 corrected with score 60
>CPNE-J13-01-000466 	gi|15836002|ref|NP_300526.1| polymorphic outer membrane protein E/F family protein [Chlamydophila pneumoniae J138]: S-rich region from 672 to 800 corrected with score 54
>CPNE-J13-01-000467 	gi|15836003|ref|NP_300527.1| hypothetical protein CPj0472 [Chlamydophila pneumoniae J138]: S-rich region from 2 to 637 corrected with score 119
>CPNE-J13-01-000468 	gi|15836004|ref|NP_300528.1| hypothetical protein CPj0473 [Chlamydophila pneumoniae J138]: S-rich region from 7 to 487 corrected with score 109
>CPNE-J13-01-000469 	gi|15836005|ref|NP_300529.1| hypothetical protein CPj0474 [Chlamydophila pneumoniae J138]: V-rich region from 57 to 94 corrected with score 43
>CPNE-J13-01-000478 	gi|15836014|ref|NP_300538.1| hypothetical protein CPj0483 [Chlamydophila pneumoniae J138]: P-rich region from 77 to 164 corrected with score 174
>CPNE-J13-01-000494 	gi|15836030|ref|NP_300554.1| hypothetical protein CPj0499 [Chlamydophila pneumoniae J138]: E-rich region from 316 to 384 corrected with score 55
>CPNE-J13-01-000494 	gi|15836030|ref|NP_300554.1| hypothetical protein CPj0499 [Chlamydophila pneumoniae J138]: S-rich region from 2 to 86 corrected with score 46
>CPNE-J13-01-000497 	gi|15836033|ref|NP_300557.1| HSP-70 cofactor [Chlamydophila pneumoniae J138]: E-rich region from 7 to 63 corrected with score 55
>CPNE-J13-01-000498 	gi|15836034|ref|NP_300558.1| molecular chaperone DnaK [Chlamydophila pneumoniae J138]: E-rich region from 493 to 660 corrected with score 64
>CPNE-J13-01-000498 	gi|15836034|ref|NP_300558.1| molecular chaperone DnaK [Chlamydophila pneumoniae J138]: S-rich region from 599 to 643 corrected with score 46
>CPNE-J13-01-000499 	gi|15836035|ref|NP_300559.1| ribonuclease family protein [Chlamydophila pneumoniae J138]: K-rich region from 655 to 674 corrected with score 43
>CPNE-J13-01-000511 	gi|15836047|ref|NP_300571.1| hypothetical protein CPj0516 [Chlamydophila pneumoniae J138]: T-rich region from 154 to 207 corrected with score 43
>CPNE-J13-01-000512 	gi|15836048|ref|NP_300572.1| hypothetical protein CPj0517 [Chlamydophila pneumoniae J138]: I-rich region from 40 to 88 corrected with score 42
>CPNE-J13-01-000520 	gi|15836056|ref|NP_300580.1| hypothetical protein CPj0525 [Chlamydophila pneumoniae J138]: E-rich region from 25 to 174 corrected with score 56
>CPNE-J13-01-000522 	gi|15836058|ref|NP_300582.1| branched-chain alpha-keto acid dehydrogenase subunit E2 [Chlamydophila pneumoniae J138]: S-rich region from 82 to 108 corrected with score 40
>CPNE-J13-01-000535 	gi|15836071|ref|NP_300595.1| polymorphic membrane protein B family [Chlamydophila pneumoniae J138]: S-rich region from 24 to 1270 corrected with score 354
>CPNE-J13-01-000535 	gi|15836071|ref|NP_300595.1| polymorphic membrane protein B family [Chlamydophila pneumoniae J138]: A-rich region from 529 to 570 corrected with score 43
>CPNE-J13-01-000538 	gi|15836074|ref|NP_300598.1| metal transport protein [Chlamydophila pneumoniae J138]: L-rich region from 183 to 239 corrected with score 51
>CPNE-J13-01-000539 	gi|15836075|ref|NP_300599.1| GTPase ObgE [Chlamydophila pneumoniae J138]: G-rich region from 31 to 43 corrected with score 43
>CPNE-J13-01-000547 	gi|15836083|ref|NP_300607.1| 30S ribosomal protein S12 [Chlamydophila pneumoniae J138]: K-rich region from 9 to 51 corrected with score 41
>CPNE-J13-01-000559 	gi|15836095|ref|NP_300619.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila pneumoniae J138]: S-rich region from 136 to 244 corrected with score 48
>CPNE-J13-01-000567 	gi|15836103|ref|NP_300627.1| hypothetical protein CPj0572 [Chlamydophila pneumoniae J138]: S-rich region from 6 to 751 corrected with score 229
>CPNE-J13-01-000567 	gi|15836103|ref|NP_300627.1| hypothetical protein CPj0572 [Chlamydophila pneumoniae J138]: T-rich region from 554 to 664 corrected with score 111
>CPNE-J13-01-000567 	gi|15836103|ref|NP_300627.1| hypothetical protein CPj0572 [Chlamydophila pneumoniae J138]: T-rich region from 9 to 50 corrected with score 61
>CPNE-J13-01-000567 	gi|15836103|ref|NP_300627.1| hypothetical protein CPj0572 [Chlamydophila pneumoniae J138]: P-rich region from 449 to 461 corrected with score 48
>CPNE-J13-01-000571 	gi|15836107|ref|NP_300631.1| peptide chain release factor 2 [Chlamydophila pneumoniae J138]: Q-rich region from 255 to 296 corrected with score 40
>CPNE-J13-01-000581 	gi|15836117|ref|NP_300641.1| hypothetical protein CPj0585 [Chlamydophila pneumoniae J138]: Q-rich region from 226 to 650 corrected with score 146
>CPNE-J13-01-000581 	gi|15836117|ref|NP_300641.1| hypothetical protein CPj0585 [Chlamydophila pneumoniae J138]: E-rich region from 377 to 580 corrected with score 46
>CPNE-J13-01-000610 	gi|15836146|ref|NP_300670.1| ADP/ATP translocase [Chlamydophila pneumoniae J138]: I-rich region from 467 to 499 corrected with score 43
>CPNE-J13-01-000618 	gi|15836154|ref|NP_300678.1| hypothetical protein CPj0622 [Chlamydophila pneumoniae J138]: Q-rich region from 69 to 241 corrected with score 82
>CPNE-J13-01-000619 	gi|15836155|ref|NP_300679.1| hypothetical protein CPj0623 [Chlamydophila pneumoniae J138]: E-rich region from 109 to 191 corrected with score 66
>CPNE-J13-01-000619 	gi|15836155|ref|NP_300679.1| hypothetical protein CPj0623 [Chlamydophila pneumoniae J138]: K-rich region from 127 to 157 corrected with score 51
>CPNE-J13-01-000625 	gi|15836161|ref|NP_300685.1| preprotein translocase subunit SecY [Chlamydophila pneumoniae J138]: I-rich region from 230 to 251 corrected with score 44
>CPNE-J13-01-000626 	gi|15836162|ref|NP_300686.1| 50S ribosomal protein L15 [Chlamydophila pneumoniae J138]: G-rich region from 21 to 55 corrected with score 42
>CPNE-J13-01-000661 	gi|15836197|ref|NP_300721.1| hexosphosphate transport [Chlamydophila pneumoniae J138]: W-rich region from 127 to 139 corrected with score 40
>CPNE-J13-01-000661 	gi|15836197|ref|NP_300721.1| hexosphosphate transport [Chlamydophila pneumoniae J138]: Y-rich region from 27 to 47 corrected with score 40
>CPNE-J13-01-000668 	gi|15836204|ref|NP_300728.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae J138]: H-rich region from 172 to 187 corrected with score 41
>CPNE-J13-01-000673 	gi|15836209|ref|NP_300733.1| hypothetical protein CPj0677 [Chlamydophila pneumoniae J138]: S-rich region from 18 to 159 corrected with score 65
>CPNE-J13-01-000673 	gi|15836209|ref|NP_300733.1| hypothetical protein CPj0677 [Chlamydophila pneumoniae J138]: P-rich region from 80 to 122 corrected with score 45
>CPNE-J13-01-000674 	gi|15836210|ref|NP_300734.1| hypothetical protein CPj0678 [Chlamydophila pneumoniae J138]: P-rich region from 137 to 189 corrected with score 52
>CPNE-J13-01-000688 	gi|15836224|ref|NP_300748.1| cysteine desulfurase activator complex subunit SufB [Chlamydophila pneumoniae J138]: S-rich region from 334 to 428 corrected with score 41
>CPNE-J13-01-000692 	gi|15836228|ref|NP_300752.1| 30S ribosomal protein S2 [Chlamydophila pneumoniae J138]: E-rich region from 251 to 266 corrected with score 40
>CPNE-J13-01-000698 	gi|15836234|ref|NP_300758.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]: K-rich region from 52 to 252 corrected with score 43
>CPNE-J13-01-000698 	gi|15836234|ref|NP_300758.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]: T-rich region from 732 to 802 corrected with score 40
>CPNE-J13-01-000701 	gi|15836237|ref|NP_300761.1| hypothetical protein CPj0705 [Chlamydophila pneumoniae J138]: E-rich region from 22 to 87 corrected with score 57
>CPNE-J13-01-000701 	gi|15836237|ref|NP_300761.1| hypothetical protein CPj0705 [Chlamydophila pneumoniae J138]: E-rich region from 249 to 277 corrected with score 47
>CPNE-J13-01-000702 	gi|15836238|ref|NP_300762.1| hypothetical protein CPj0706 [Chlamydophila pneumoniae J138]: E-rich region from 13 to 149 corrected with score 97
>CPNE-J13-01-000708 	gi|15836244|ref|NP_300768.1| FHA domain-containing protein [Chlamydophila pneumoniae J138]: E-rich region from 114 to 359 corrected with score 168
>CPNE-J13-01-000708 	gi|15836244|ref|NP_300768.1| FHA domain-containing protein [Chlamydophila pneumoniae J138]: S-rich region from 118 to 363 corrected with score 54
>CPNE-J13-01-000708 	gi|15836244|ref|NP_300768.1| FHA domain-containing protein [Chlamydophila pneumoniae J138]: E-rich region from 518 to 539 corrected with score 43
>CPNE-J13-01-000722 	gi|15836258|ref|NP_300782.1| hypothetical protein CPj0726 [Chlamydophila pneumoniae J138]: S-rich region from 336 to 475 corrected with score 41
>CPNE-J13-01-000723 	gi|15836259|ref|NP_300783.1| hypothetical protein CPj0727 [Chlamydophila pneumoniae J138]: Q-rich region from 818 to 847 corrected with score 45
>CPNE-J13-01-000724 	gi|15836260|ref|NP_300784.1| hypothetical protein CPj0728 [Chlamydophila pneumoniae J138]: S-rich region from 22 to 632 corrected with score 136
>CPNE-J13-01-000724 	gi|15836260|ref|NP_300784.1| hypothetical protein CPj0728 [Chlamydophila pneumoniae J138]: A-rich region from 391 to 457 corrected with score 73
>CPNE-J13-01-000738 	gi|15836274|ref|NP_300798.1| hypothetical protein CPj0742 [Chlamydophila pneumoniae J138]: K-rich region from 119 to 138 corrected with score 45
>CPNE-J13-01-000742 	gi|15836278|ref|NP_300802.1| hypothetical protein CPj0746 [Chlamydophila pneumoniae J138]: H-rich region from 274 to 279 corrected with score 40
>CPNE-J13-01-000752 	gi|15836288|ref|NP_300812.1| hypothetical protein CPj0755 [Chlamydophila pneumoniae J138]: Q-rich region from 59 to 200 corrected with score 52
>CPNE-J13-01-000766 	gi|15836302|ref|NP_300826.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila pneumoniae J138]: K-rich region from 737 to 784 corrected with score 71
>CPNE-J13-01-000766 	gi|15836302|ref|NP_300826.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila pneumoniae J138]: E-rich region from 437 to 470 corrected with score 43
>CPNE-J13-01-000780 	gi|15836316|ref|NP_300840.1| hypothetical protein CPj0783 [Chlamydophila pneumoniae J138]: P-rich region from 46 to 121 corrected with score 64
>CPNE-J13-01-000805 	gi|15836341|ref|NP_300865.1| hypothetical protein CPj0808 [Chlamydophila pneumoniae J138]: S-rich region from 2 to 441 corrected with score 213
>CPNE-J13-01-000805 	gi|15836341|ref|NP_300865.1| hypothetical protein CPj0808 [Chlamydophila pneumoniae J138]: A-rich region from 177 to 310 corrected with score 89
>CPNE-J13-01-000806 	gi|15836342|ref|NP_300866.1| hypothetical protein CPj0809 [Chlamydophila pneumoniae J138]: A-rich region from 56 to 488 corrected with score 154
>CPNE-J13-01-000806 	gi|15836342|ref|NP_300866.1| hypothetical protein CPj0809 [Chlamydophila pneumoniae J138]: S-rich region from 2 to 160 corrected with score 65
>CPNE-J13-01-000808 	gi|15836344|ref|NP_300868.1| low calcium response protein H [Chlamydophila pneumoniae J138]: K-rich region from 186 to 231 corrected with score 48
>CPNE-J13-01-000820 	gi|15836356|ref|NP_300880.1| YopT tranlocation T [Chlamydophila pneumoniae J138]: M-rich region from 165 to 282 corrected with score 45
>CPNE-J13-01-000822 	gi|15836358|ref|NP_300882.1| type III secretion system protein [Chlamydophila pneumoniae J138]: L-rich region from 93 to 121 corrected with score 43
>CPNE-J13-01-000822 	gi|15836358|ref|NP_300882.1| type III secretion system protein [Chlamydophila pneumoniae J138]: L-rich region from 249 to 303 corrected with score 42
>CPNE-J13-01-000825 	gi|15836361|ref|NP_300885.1| Yop translocation J [Chlamydophila pneumoniae J138]: E-rich region from 287 to 333 corrected with score 50
>CPNE-J13-01-000841 	gi|15836377|ref|NP_300901.1| GTP-binding protein EngA [Chlamydophila pneumoniae J138]: E-rich region from 166 to 187 corrected with score 51
>CPNE-J13-01-000846 	gi|15836382|ref|NP_300906.1| SWI/SNF family helicase_2 [Chlamydophila pneumoniae J138]: E-rich region from 109 to 144 corrected with score 48
>CPNE-J13-01-000849 	gi|15836385|ref|NP_300909.1| hypothetical protein CPj0852 [Chlamydophila pneumoniae J138]: Q-rich region from 707 to 742 corrected with score 46
>CPNE-J13-01-000851 	gi|15836387|ref|NP_300911.1| outer membrane protein B [Chlamydophila pneumoniae J138]: T-rich region from 87 to 137 corrected with score 52
>CPNE-J13-01-000873 	gi|15836409|ref|NP_300933.1| D-alanine/glycine permease [Chlamydophila pneumoniae J138]: V-rich region from 295 to 321 corrected with score 42
>CPNE-J13-01-000877 	gi|15836413|ref|NP_300937.1| cell division protein ftsK [Chlamydophila pneumoniae J138]: F-rich region from 57 to 84 corrected with score 45
>CPNE-J13-01-000878 	gi|15836414|ref|NP_300938.1| hypothetical protein CPj0881 [Chlamydophila pneumoniae J138]: S-rich region from 6 to 87 corrected with score 45
>CPNE-J13-01-000883 	gi|15836419|ref|NP_300943.1| histone-like developmental protein [Chlamydophila pneumoniae J138]: K-rich region from 4 to 123 corrected with score 110
>CPNE-J13-01-000883 	gi|15836419|ref|NP_300943.1| histone-like developmental protein [Chlamydophila pneumoniae J138]: A-rich region from 67 to 109 corrected with score 40
>CPNE-J13-01-000893 	gi|15836429|ref|NP_300953.1| hypothetical protein CPj0896 [Chlamydophila pneumoniae J138]: K-rich region from 2 to 36 corrected with score 45
>CPNE-J13-01-000909 	gi|15836445|ref|NP_300969.1| hypothetical protein CPj0912 [Chlamydophila pneumoniae J138]: Q-rich region from 370 to 551 corrected with score 43
>CPNE-J13-01-000922 	gi|15836458|ref|NP_300982.1| hypothetical protein CPj0925 [Chlamydophila pneumoniae J138]: P-rich region from 54 to 66 corrected with score 40
>CPNE-J13-01-000932 	gi|15836468|ref|NP_300992.1| 50S ribosomal protein L34 [Chlamydophila pneumoniae J138]: R-rich region from 2 to 40 corrected with score 47
>CPNE-J13-01-000934 	gi|15836470|ref|NP_300994.1| 30S ribosomal protein S14 [Chlamydophila pneumoniae J138]: K-rich region from 3 to 53 corrected with score 41
>CPNE-J13-01-000960 	gi|15836496|ref|NP_301020.1| outer membrane protein D family protein [Chlamydophila pneumoniae J138]: S-rich region from 125 to 933 corrected with score 83
>CPNE-J13-01-000967 	gi|15836503|ref|NP_301027.1| transport permease [Chlamydophila pneumoniae J138]: I-rich region from 141 to 181 corrected with score 42
>CPNE-J13-01-000976 	gi|15836512|ref|NP_301036.1| zinc metalloprotease [Chlamydophila pneumoniae J138]: E-rich region from 462 to 508 corrected with score 42
>CPNE-J13-01-000985 	gi|15836521|ref|NP_301045.1| translation initiation factor IF-3 [Chlamydophila pneumoniae J138]: K-rich region from 71 to 117 corrected with score 41
>CPNE-J13-01-000986 	gi|15836522|ref|NP_301046.1| 50S ribosomal protein L35 [Chlamydophila pneumoniae J138]: K-rich region from 3 to 47 corrected with score 44
>CPNE-J13-01-000989 	gi|15836525|ref|NP_301049.1| hypothetical protein CPj0994 [Chlamydophila pneumoniae J138]: E-rich region from 94 to 142 corrected with score 42
>CPNE-J13-01-000999 	gi|15836535|ref|NP_301059.1| hypothetical protein CPj1004 [Chlamydophila pneumoniae J138]: Q-rich region from 68 to 149 corrected with score 58
>CPNE-J13-01-001000 	gi|15836536|ref|NP_301060.1| hypothetical protein CPj1005 [Chlamydophila pneumoniae J138]: N-rich region from 96 to 147 corrected with score 41
>CPNE-J13-01-001001 	gi|15836537|ref|NP_301061.1| hypothetical protein CPj1006 [Chlamydophila pneumoniae J138]: Q-rich region from 43 to 141 corrected with score 52
>CPNE-J13-01-001003 	gi|15836539|ref|NP_301063.1| hypothetical protein CPj1008 [Chlamydophila pneumoniae J138]: E-rich region from 131 to 424 corrected with score 42
>CPNE-J13-01-001014 	gi|15836550|ref|NP_301074.1| hypothetical protein CPj1019 [Chlamydophila pneumoniae J138]: S-rich region from 92 to 290 corrected with score 118
>CPNE-J13-01-001014 	gi|15836550|ref|NP_301074.1| hypothetical protein CPj1019 [Chlamydophila pneumoniae J138]: Q-rich region from 160 to 286 corrected with score 74
>CPNE-J13-01-001015 	gi|15836551|ref|NP_301075.1| hypothetical protein CPj1020 [Chlamydophila pneumoniae J138]: Q-rich region from 89 to 248 corrected with score 64
>CPNE-J13-01-001017 	gi|15836553|ref|NP_301077.1| hypothetical protein CPj1022 [Chlamydophila pneumoniae J138]: Q-rich region from 99 to 264 corrected with score 116
>CPNE-J13-01-001017 	gi|15836553|ref|NP_301077.1| hypothetical protein CPj1022 [Chlamydophila pneumoniae J138]: S-rich region from 103 to 228 corrected with score 71
>CPNE-J13-01-001017 	gi|15836553|ref|NP_301077.1| hypothetical protein CPj1022 [Chlamydophila pneumoniae J138]: K-rich region from 217 to 264 corrected with score 47
>CPNE-J13-01-001018 	gi|15836554|ref|NP_301078.1| hypothetical protein CPj1023 [Chlamydophila pneumoniae J138]: Y-rich region from 56 to 74 corrected with score 52
>CPNE-J13-01-001022 	gi|15836558|ref|NP_301082.1| hypothetical protein CPj1027 [Chlamydophila pneumoniae J138]: I-rich region from 33 to 92 corrected with score 44
>CPNE-J13-01-001051 	gi|15836587|ref|NP_301111.1| hypothetical protein CPj1056 [Chlamydophila pneumoniae J138]: K-rich region from 155 to 225 corrected with score 49
>CPNE-J13-01-001066 	gi|15836602|ref|NP_301126.1| hypothetical protein CPj1071 [Chlamydophila pneumoniae J138]: D-rich region from 441 to 454 corrected with score 43
>CPNE-LPC-01-000001 	gi|269303489|gb|ACZ33588.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: T-rich region from 26 to 67 corrected with score 51
>CPNE-LPC-01-000009 	gi|269303480|gb|ACZ33580.1| ribosomal protein L34 [Chlamydophila pneumoniae LPCoLN]: R-rich region from 2 to 40 corrected with score 47
>CPNE-LPC-01-000012 	gi|269303477|gb|ACZ33577.1| hypothetical protein CPK_ORF01117 [Chlamydophila pneumoniae LPCoLN]: E-rich region from 30 to 65 corrected with score 52
>CPNE-LPC-01-000027 	gi|269303462|gb|ACZ33562.1| conserved domain protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 226 to 654 corrected with score 156
>CPNE-LPC-01-000027 	gi|269303462|gb|ACZ33562.1| conserved domain protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 377 to 651 corrected with score 43
>CPNE-LPC-01-000039 	gi|269303450|gb|ACZ33550.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 6 to 986 corrected with score 355
>CPNE-LPC-01-000039 	gi|269303450|gb|ACZ33550.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: T-rich region from 765 to 899 corrected with score 150
>CPNE-LPC-01-000039 	gi|269303450|gb|ACZ33550.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: T-rich region from 9 to 53 corrected with score 61
>CPNE-LPC-01-000039 	gi|269303450|gb|ACZ33550.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: G-rich region from 534 to 560 corrected with score 50
>CPNE-LPC-01-000039 	gi|269303450|gb|ACZ33550.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 439 to 461 corrected with score 49
>CPNE-LPC-01-000050 	gi|269303439|gb|ACZ33539.1| protein-export membrane protein SecDF [Chlamydophila pneumoniae LPCoLN]: S-rich region from 136 to 244 corrected with score 41
>CPNE-LPC-01-000062 	gi|269303427|gb|ACZ33527.1| ribosomal protein S12 [Chlamydophila pneumoniae LPCoLN]: K-rich region from 9 to 51 corrected with score 41
>CPNE-LPC-01-000070 	gi|269303419|gb|ACZ33519.1| GTP-binding protein Obg/CgtA [Chlamydophila pneumoniae LPCoLN]: G-rich region from 31 to 43 corrected with score 43
>CPNE-LPC-01-000073 	gi|269303416|gb|ACZ33516.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: S-rich region from 24 to 1276 corrected with score 355
>CPNE-LPC-01-000073 	gi|269303416|gb|ACZ33516.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: P-rich region from 318 to 335 corrected with score 61
>CPNE-LPC-01-000073 	gi|269303416|gb|ACZ33516.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: A-rich region from 535 to 576 corrected with score 44
>CPNE-LPC-01-000073 	gi|269303416|gb|ACZ33516.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: T-rich region from 341 to 377 corrected with score 40
>CPNE-LPC-01-000086 	gi|269303403|gb|ACZ33503.1| 2-oxo acid dehydrogenase acyltransferase family protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 82 to 193 corrected with score 43
>CPNE-LPC-01-000088 	gi|269303401|gb|ACZ33501.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 25 to 174 corrected with score 56
>CPNE-LPC-01-000097 	gi|269303392|gb|ACZ33492.1| hypothetical protein CPK_ORF01031 [Chlamydophila pneumoniae LPCoLN]: I-rich region from 40 to 97 corrected with score 47
>CPNE-LPC-01-000108 	gi|269303381|gb|ACZ33481.1| 3'-5' exoribonuclease, VacB and RNase II family [Chlamydophila pneumoniae LPCoLN]: K-rich region from 638 to 657 corrected with score 43
>CPNE-LPC-01-000109 	gi|269303380|gb|ACZ33480.1| chaperone protein DnaK [Chlamydophila pneumoniae LPCoLN]: E-rich region from 493 to 660 corrected with score 63
>CPNE-LPC-01-000109 	gi|269303380|gb|ACZ33480.1| chaperone protein DnaK [Chlamydophila pneumoniae LPCoLN]: S-rich region from 599 to 643 corrected with score 43
>CPNE-LPC-01-000110 	gi|269303379|gb|ACZ33479.1| co-chaperone GrpE [Chlamydophila pneumoniae LPCoLN]: E-rich region from 7 to 63 corrected with score 55
>CPNE-LPC-01-000113 	gi|269303376|gb|ACZ33476.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 316 to 384 corrected with score 53
>CPNE-LPC-01-000128 	gi|269303361|gb|ACZ33461.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 67 to 166 corrected with score 217
>CPNE-LPC-01-000138 	gi|269303351|gb|ACZ33451.1| putative membrane protein [Chlamydophila pneumoniae LPCoLN]: V-rich region from 57 to 94 corrected with score 43
>CPNE-LPC-01-000139 	gi|269303350|gb|ACZ33450.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 7 to 450 corrected with score 92
>CPNE-LPC-01-000140 	gi|269303349|gb|ACZ33449.1| hypothetical protein CPK_ORF00987 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 2 to 637 corrected with score 117
>CPNE-LPC-01-000142 	gi|269303347|gb|ACZ33447.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: S-rich region from 7 to 373 corrected with score 55
>CPNE-LPC-01-000143 	gi|269303346|gb|ACZ33446.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: N-rich region from 147 to 306 corrected with score 55
>CPNE-LPC-01-000144 	gi|269303345|gb|ACZ33445.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: N-rich region from 187 to 369 corrected with score 55
>CPNE-LPC-01-000144 	gi|269303345|gb|ACZ33445.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: T-rich region from 469 to 534 corrected with score 44
>CPNE-LPC-01-000144 	gi|269303345|gb|ACZ33445.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: S-rich region from 690 to 731 corrected with score 41
>CPNE-LPC-01-000154 	gi|269303335|gb|ACZ33435.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: S-rich region from 46 to 520 corrected with score 77
>CPNE-LPC-01-000155 	gi|269303334|gb|ACZ33434.1| putative outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 64 to 579 corrected with score 105
>CPNE-LPC-01-000155 	gi|269303334|gb|ACZ33434.1| putative outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: P-rich region from 295 to 326 corrected with score 55
>CPNE-LPC-01-000157 	gi|269303332|gb|ACZ33432.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 11 to 502 corrected with score 132
>CPNE-LPC-01-000157 	gi|269303332|gb|ACZ33432.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: T-rich region from 573 to 590 corrected with score 44
>CPNE-LPC-01-000159 	gi|269303330|gb|ACZ33430.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 11 to 518 corrected with score 163
>CPNE-LPC-01-000159 	gi|269303330|gb|ACZ33430.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: T-rich region from 40 to 83 corrected with score 52
>CPNE-LPC-01-000159 	gi|269303330|gb|ACZ33430.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: T-rich region from 551 to 599 corrected with score 51
>CPNE-LPC-01-000162 	gi|269303327|gb|ACZ33427.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 11 to 527 corrected with score 154
>CPNE-LPC-01-000163 	gi|269303326|gb|ACZ33426.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 21 to 685 corrected with score 187
>CPNE-LPC-01-000164 	gi|269303325|gb|ACZ33425.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 2 to 592 corrected with score 125
>CPNE-LPC-01-000166 	gi|269303323|gb|ACZ33423.1| putative outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 10 to 809 corrected with score 332
>CPNE-LPC-01-000166 	gi|269303323|gb|ACZ33423.1| putative outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: T-rich region from 45 to 678 corrected with score 86
>CPNE-LPC-01-000166 	gi|269303323|gb|ACZ33423.1| putative outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: P-rich region from 860 to 882 corrected with score 40
>CPNE-LPC-01-000167 	gi|269303322|gb|ACZ33422.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 195 to 404 corrected with score 84
>CPNE-LPC-01-000167 	gi|269303322|gb|ACZ33422.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 346 to 383 corrected with score 63
>CPNE-LPC-01-000167 	gi|269303322|gb|ACZ33422.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: A-rich region from 61 to 147 corrected with score 41
>CPNE-LPC-01-000168 	gi|269303321|gb|ACZ33421.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 143 to 157 corrected with score 44
>CPNE-LPC-01-000171 	gi|269303318|gb|ACZ33418.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: I-rich region from 46 to 99 corrected with score 46
>CPNE-LPC-01-000172 	gi|269303317|gb|ACZ33417.1| negative regulator of genetic competence ClpC/MecB [Chlamydophila pneumoniae LPCoLN]: S-rich region from 153 to 186 corrected with score 61
>CPNE-LPC-01-000172 	gi|269303317|gb|ACZ33417.1| negative regulator of genetic competence ClpC/MecB [Chlamydophila pneumoniae LPCoLN]: E-rich region from 441 to 498 corrected with score 55
>CPNE-LPC-01-000189 	gi|269303300|gb|ACZ33400.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: D-rich region from 129 to 144 corrected with score 54
>CPNE-LPC-01-000193 	gi|269303296|gb|ACZ33396.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: C-rich region from 10 to 16 corrected with score 42
>CPNE-LPC-01-000208 	gi|269303281|gb|ACZ33381.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 20 to 187 corrected with score 102
>CPNE-LPC-01-000208 	gi|269303281|gb|ACZ33381.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 552 to 576 corrected with score 41
>CPNE-LPC-01-000228 	gi|269303261|gb|ACZ33361.1| putative membrane protein [Chlamydophila pneumoniae LPCoLN]: V-rich region from 16 to 176 corrected with score 55
>CPNE-LPC-01-000234 	gi|269303255|gb|ACZ33355.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 27 to 127 corrected with score 54
>CPNE-LPC-01-000237 	gi|269303252|gb|ACZ33352.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: L-rich region from 42 to 103 corrected with score 43
>CPNE-LPC-01-000243 	gi|269303246|gb|ACZ33346.1| hypothetical protein CPK_ORF00879 [Chlamydophila pneumoniae LPCoLN]: I-rich region from 39 to 95 corrected with score 56
>CPNE-LPC-01-000244 	gi|269303245|gb|ACZ33345.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 83 to 127 corrected with score 46
>CPNE-LPC-01-000249 	gi|269303240|gb|ACZ33340.1| hypothetical protein CPK_ORF00873 [Chlamydophila pneumoniae LPCoLN]: I-rich region from 38 to 83 corrected with score 44
>CPNE-LPC-01-000255 	gi|269303234|gb|ACZ33334.1| GTP-binding protein LepA [Chlamydophila pneumoniae LPCoLN]: K-rich region from 567 to 587 corrected with score 41
>CPNE-LPC-01-000258 	gi|269303231|gb|ACZ33331.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: I-rich region from 28 to 75 corrected with score 43
>CPNE-LPC-01-000272 	gi|269303217|gb|ACZ33317.1| putative RIP metalloprotease RseP [Chlamydophila pneumoniae LPCoLN]: F-rich region from 600 to 620 corrected with score 41
>CPNE-LPC-01-000280 	gi|269303209|gb|ACZ33309.1| late transcription unit B protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 3 to 72 corrected with score 54
>CPNE-LPC-01-000281 	gi|269303208|gb|ACZ33308.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 4 to 463 corrected with score 169
>CPNE-LPC-01-000281 	gi|269303208|gb|ACZ33308.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: G-rich region from 544 to 562 corrected with score 44
>CPNE-LPC-01-000282 	gi|269303207|gb|ACZ33307.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 51 to 116 corrected with score 75
>CPNE-LPC-01-000290 	gi|269303199|gb|ACZ33299.1| type III secretion regulator YopN/LcrE/InvE/MxiC [Chlamydophila pneumoniae LPCoLN]: K-rich region from 59 to 91 corrected with score 49
>CPNE-LPC-01-000290 	gi|269303199|gb|ACZ33299.1| type III secretion regulator YopN/LcrE/InvE/MxiC [Chlamydophila pneumoniae LPCoLN]: A-rich region from 2 to 36 corrected with score 40
>CPNE-LPC-01-000291 	gi|269303198|gb|ACZ33298.1| type III secretion protein AscV [Chlamydophila pneumoniae LPCoLN]: I-rich region from 27 to 141 corrected with score 50
>CPNE-LPC-01-000291 	gi|269303198|gb|ACZ33298.1| type III secretion protein AscV [Chlamydophila pneumoniae LPCoLN]: G-rich region from 334 to 360 corrected with score 40
>CPNE-LPC-01-000297 	gi|269303192|gb|ACZ33292.1| translation initiation factor IF-2 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 22 to 99 corrected with score 76
>CPNE-LPC-01-000297 	gi|269303192|gb|ACZ33292.1| translation initiation factor IF-2 [Chlamydophila pneumoniae LPCoLN]: K-rich region from 139 to 284 corrected with score 52
>CPNE-LPC-01-000313 	gi|269303176|gb|ACZ33276.1| outer membrane protein, OmpH family [Chlamydophila pneumoniae LPCoLN]: E-rich region from 33 to 144 corrected with score 57
>CPNE-LPC-01-000322 	gi|269303167|gb|ACZ33267.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: I-rich region from 127 to 150 corrected with score 46
>CPNE-LPC-01-000323 	gi|269303166|gb|ACZ33266.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: V-rich region from 99 to 172 corrected with score 45
>CPNE-LPC-01-000330 	gi|269303159|gb|ACZ33259.1| amino acid permease family protein [Chlamydophila pneumoniae LPCoLN]: W-rich region from 81 to 98 corrected with score 40
>CPNE-LPC-01-000331 	gi|269303158|gb|ACZ33258.1| hypothetical protein CPK_ORF00791 [Chlamydophila pneumoniae LPCoLN]: T-rich region from 262 to 297 corrected with score 47
>CPNE-LPC-01-000336 	gi|269303153|gb|ACZ33253.1| putative lipoprotein [Chlamydophila pneumoniae LPCoLN]: V-rich region from 76 to 136 corrected with score 65
>CPNE-LPC-01-000346 	gi|269303143|gb|ACZ33243.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 374 to 395 corrected with score 41
>CPNE-LPC-01-000346 	gi|269303143|gb|ACZ33243.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: N-rich region from 336 to 366 corrected with score 40
>CPNE-LPC-01-000353 	gi|269303136|gb|ACZ33236.1| SEC-C domain protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 15 to 112 corrected with score 42
>CPNE-LPC-01-000365 	gi|269303124|gb|ACZ33224.1| ribosomal protein S9 [Chlamydophila pneumoniae LPCoLN]: K-rich region from 93 to 134 corrected with score 40
>CPNE-LPC-01-000368 	gi|269303121|gb|ACZ33221.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: V-rich region from 19 to 60 corrected with score 40
>CPNE-LPC-01-000371 	gi|269303118|gb|ACZ33218.1| hypothetical protein CPK_ORF00751 [Chlamydophila pneumoniae LPCoLN]: V-rich region from 26 to 57 corrected with score 44
>CPNE-LPC-01-000373 	gi|269303116|gb|ACZ33216.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 362 to 388 corrected with score 82
>CPNE-LPC-01-000373 	gi|269303116|gb|ACZ33216.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: G-rich region from 312 to 360 corrected with score 79
>CPNE-LPC-01-000373 	gi|269303116|gb|ACZ33216.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: A-rich region from 160 to 233 corrected with score 51
>CPNE-LPC-01-000382 	gi|269303107|gb|ACZ33207.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 126 to 216 corrected with score 52
>CPNE-LPC-01-000387 	gi|269303102|gb|ACZ33202.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 140 to 223 corrected with score 59
>CPNE-LPC-01-000400 	gi|269303089|gb|ACZ33189.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: L-rich region from 31 to 86 corrected with score 42
>CPNE-LPC-01-000403 	gi|269303086|gb|ACZ33186.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: L-rich region from 39 to 86 corrected with score 42
>CPNE-LPC-01-000428 	gi|269303061|gb|ACZ33161.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 154 to 336 corrected with score 71
>CPNE-LPC-01-000428 	gi|269303061|gb|ACZ33161.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 352 to 382 corrected with score 44
>CPNE-LPC-01-000435 	gi|269303054|gb|ACZ33154.1| MAC/perforin domain protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 384 to 450 corrected with score 55
>CPNE-LPC-01-000435 	gi|269303054|gb|ACZ33154.1| MAC/perforin domain protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 528 to 561 corrected with score 41
>CPNE-LPC-01-000436 	gi|269303053|gb|ACZ33153.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: I-rich region from 48 to 105 corrected with score 50
>CPNE-LPC-01-000437 	gi|269303052|gb|ACZ33152.1| hypothetical protein CPK_ORF00683 [Chlamydophila pneumoniae LPCoLN]: L-rich region from 26 to 76 corrected with score 44
>CPNE-LPC-01-000438 	gi|269303051|gb|ACZ33151.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 147 to 171 corrected with score 86
>CPNE-LPC-01-000439 	gi|269303050|gb|ACZ33150.1| hypothetical protein CPK_ORF00681 [Chlamydophila pneumoniae LPCoLN]: L-rich region from 29 to 82 corrected with score 63
>CPNE-LPC-01-000456 	gi|269303033|gb|ACZ33133.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 1398 to 1509 corrected with score 57
>CPNE-LPC-01-000464 	gi|269303025|gb|ACZ33125.1| chaperone ClpB [Chlamydophila pneumoniae LPCoLN]: E-rich region from 412 to 534 corrected with score 64
>CPNE-LPC-01-000477 	gi|269303012|gb|ACZ33112.1| hypothetical protein CPK_ORF00643 [Chlamydophila pneumoniae LPCoLN]: L-rich region from 34 to 81 corrected with score 44
>CPNE-LPC-01-000478 	gi|269303011|gb|ACZ33111.1| conserved domain protein [Chlamydophila pneumoniae LPCoLN]: L-rich region from 29 to 77 corrected with score 47
>CPNE-LPC-01-000482 	gi|269303007|gb|ACZ33107.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: L-rich region from 36 to 92 corrected with score 43
>CPNE-LPC-01-000482 	gi|269303007|gb|ACZ33107.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 395 to 501 corrected with score 42
>CPNE-LPC-01-000483 	gi|269303006|gb|ACZ33106.1| hypothetical protein CPK_ORF00637 [Chlamydophila pneumoniae LPCoLN]: E-rich region from 29 to 170 corrected with score 61
>CPNE-LPC-01-000484 	gi|269303005|gb|ACZ33105.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 330 to 399 corrected with score 42
>CPNE-LPC-01-000502 	gi|269302987|gb|ACZ33087.1| conserved domain protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 132 to 209 corrected with score 64
>CPNE-LPC-01-000505 	gi|269302984|gb|ACZ33084.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 240 to 272 corrected with score 44
>CPNE-LPC-01-000525 	gi|269302964|gb|ACZ33064.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 18 to 74 corrected with score 40
>CPNE-LPC-01-000545 	gi|269302944|gb|ACZ33044.1| conserved domain protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 54 to 99 corrected with score 48
>CPNE-LPC-01-000546 	gi|269302943|gb|ACZ33043.1| hypothetical protein CPK_ORF00573 [Chlamydophila pneumoniae LPCoLN]: I-rich region from 34 to 83 corrected with score 47
>CPNE-LPC-01-000549 	gi|269302940|gb|ACZ33040.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: V-rich region from 247 to 298 corrected with score 46
>CPNE-LPC-01-000553 	gi|269302936|gb|ACZ33036.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 3 to 424 corrected with score 90
>CPNE-LPC-01-000553 	gi|269302936|gb|ACZ33036.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 45 to 120 corrected with score 48
>CPNE-LPC-01-000553 	gi|269302936|gb|ACZ33036.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 206 to 360 corrected with score 42
>CPNE-LPC-01-000566 	gi|269302923|gb|ACZ33023.1| hypothetical protein CPK_ORF00553 [Chlamydophila pneumoniae LPCoLN]: L-rich region from 127 to 160 corrected with score 51
>CPNE-LPC-01-000567 	gi|269302922|gb|ACZ33022.1| hypothetical protein CPK_ORF00552 [Chlamydophila pneumoniae LPCoLN]: L-rich region from 102 to 136 corrected with score 49
>CPNE-LPC-01-000570 	gi|269302919|gb|ACZ33019.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 330 to 729 corrected with score 68
>CPNE-LPC-01-000571 	gi|269302918|gb|ACZ33018.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 351 to 460 corrected with score 58
>CPNE-LPC-01-000571 	gi|269302918|gb|ACZ33018.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 660 to 713 corrected with score 47
>CPNE-LPC-01-000572 	gi|269302917|gb|ACZ33017.1| IncA family protein, authentic frameshift [Chlamydophila pneumoniae LPCoLN]: K-rich region from 733 to 787 corrected with score 56
>CPNE-LPC-01-000572 	gi|269302917|gb|ACZ33017.1| IncA family protein, authentic frameshift [Chlamydophila pneumoniae LPCoLN]: E-rich region from 424 to 534 corrected with score 47
>CPNE-LPC-01-000573 	gi|269302916|gb|ACZ33016.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 386 to 476 corrected with score 47
>CPNE-LPC-01-000581 	gi|269302908|gb|ACZ33008.1| hypothetical protein CPK_ORF00537 [Chlamydophila pneumoniae LPCoLN]: P-rich region from 108 to 153 corrected with score 91
>CPNE-LPC-01-000583 	gi|269302906|gb|ACZ33006.1| chaperone protein DnaJ [Chlamydophila pneumoniae LPCoLN]: G-rich region from 67 to 133 corrected with score 61
>CPNE-LPC-01-000584 	gi|269302905|gb|ACZ33005.1| ribosomal protein S21 [Chlamydophila pneumoniae LPCoLN]: K-rich region from 20 to 58 corrected with score 40
>CPNE-LPC-01-000588 	gi|269302901|gb|ACZ33001.1| hypothetical protein CPK_ORF00530 [Chlamydophila pneumoniae LPCoLN]: I-rich region from 73 to 101 corrected with score 43
>CPNE-LPC-01-000590 	gi|269302899|gb|ACZ32999.1| ATP-dependent protease La [Chlamydophila pneumoniae LPCoLN]: E-rich region from 13 to 37 corrected with score 40
>CPNE-LPC-01-000591 	gi|269302898|gb|ACZ32998.1| hypothetical protein CPK_ORF00527 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 90 to 268 corrected with score 81
>CPNE-LPC-01-000591 	gi|269302898|gb|ACZ32998.1| hypothetical protein CPK_ORF00527 [Chlamydophila pneumoniae LPCoLN]: K-rich region from 183 to 245 corrected with score 54
>CPNE-LPC-01-000591 	gi|269302898|gb|ACZ32998.1| hypothetical protein CPK_ORF00527 [Chlamydophila pneumoniae LPCoLN]: I-rich region from 34 to 81 corrected with score 47
>CPNE-LPC-01-000594 	gi|269302895|gb|ACZ32995.1| ABC transporter, ATP-binding protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 240 to 301 corrected with score 41
>CPNE-LPC-01-000600 	gi|269302889|gb|ACZ32989.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 3 to 407 corrected with score 129
>CPNE-LPC-01-000601 	gi|269302888|gb|ACZ32988.1| outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 28 to 557 corrected with score 160
>CPNE-LPC-01-000602 	gi|269302887|gb|ACZ32987.1| putative outer membrane protein 5 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 17 to 344 corrected with score 120
>CPNE-LPC-01-000603 	gi|269302886|gb|ACZ32986.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 350 to 524 corrected with score 78
>CPNE-LPC-01-000603 	gi|269302886|gb|ACZ32986.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 714 to 773 corrected with score 45
>CPNE-LPC-01-000603 	gi|269302886|gb|ACZ32986.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: I-rich region from 33 to 85 corrected with score 44
>CPNE-LPC-01-000604 	gi|269302885|gb|ACZ32985.1| hypothetical protein CPK_ORF00512 [Chlamydophila pneumoniae LPCoLN]: E-rich region from 57 to 199 corrected with score 91
>CPNE-LPC-01-000606 	gi|269302883|gb|ACZ32983.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 366 to 477 corrected with score 56
>CPNE-LPC-01-000619 	gi|269302870|gb|ACZ32970.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 238 to 248 corrected with score 44
>CPNE-LPC-01-000619 	gi|269302870|gb|ACZ32970.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: D-rich region from 439 to 474 corrected with score 41
>CPNE-LPC-01-000634 	gi|269302855|gb|ACZ32955.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 86 to 148 corrected with score 43
>CPNE-LPC-01-000634 	gi|269302855|gb|ACZ32955.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 418 to 513 corrected with score 43
>CPNE-LPC-01-000634 	gi|269302855|gb|ACZ32955.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 748 to 816 corrected with score 43
>CPNE-LPC-01-000635 	gi|269302854|gb|ACZ32954.1| IncA family protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 355 to 633 corrected with score 72
>CPNE-LPC-01-000660 	gi|269302829|gb|ACZ32929.1| hypothetical protein CPK_ORF00454 [Chlamydophila pneumoniae LPCoLN]: I-rich region from 33 to 92 corrected with score 44
>CPNE-LPC-01-000663 	gi|269302826|gb|ACZ32926.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Y-rich region from 56 to 74 corrected with score 52
>CPNE-LPC-01-000665 	gi|269302824|gb|ACZ32924.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 99 to 264 corrected with score 118
>CPNE-LPC-01-000665 	gi|269302824|gb|ACZ32924.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 103 to 228 corrected with score 71
>CPNE-LPC-01-000665 	gi|269302824|gb|ACZ32924.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 217 to 264 corrected with score 47
>CPNE-LPC-01-000667 	gi|269302822|gb|ACZ32922.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 89 to 248 corrected with score 64
>CPNE-LPC-01-000668 	gi|269302821|gb|ACZ32921.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 92 to 290 corrected with score 122
>CPNE-LPC-01-000668 	gi|269302821|gb|ACZ32921.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 160 to 286 corrected with score 72
>CPNE-LPC-01-000678 	gi|269302811|gb|ACZ32911.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 127 to 420 corrected with score 44
>CPNE-LPC-01-000681 	gi|269302808|gb|ACZ32908.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 43 to 119 corrected with score 51
>CPNE-LPC-01-000682 	gi|269302807|gb|ACZ32907.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: N-rich region from 96 to 147 corrected with score 41
>CPNE-LPC-01-000683 	gi|269302806|gb|ACZ32906.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 68 to 149 corrected with score 60
>CPNE-LPC-01-000693 	gi|269302796|gb|ACZ32896.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 94 to 142 corrected with score 42
>CPNE-LPC-01-000697 	gi|269302792|gb|ACZ32892.1| ribosomal protein L35 [Chlamydophila pneumoniae LPCoLN]: K-rich region from 3 to 47 corrected with score 44
>CPNE-LPC-01-000698 	gi|269302791|gb|ACZ32891.1| translation initiation factor IF-3 [Chlamydophila pneumoniae LPCoLN]: K-rich region from 71 to 117 corrected with score 41
>CPNE-LPC-01-000707 	gi|269302782|gb|ACZ32882.1| peptidase, M16 (pitrilysin) family [Chlamydophila pneumoniae LPCoLN]: E-rich region from 462 to 508 corrected with score 45
>CPNE-LPC-01-000728 	gi|269302761|gb|ACZ32861.1| putative lipoprotein [Chlamydophila pneumoniae LPCoLN]: I-rich region from 141 to 181 corrected with score 42
>CPNE-LPC-01-000735 	gi|269302754|gb|ACZ32854.1| polymorphic outer membrane protein family [Chlamydophila pneumoniae LPCoLN]: S-rich region from 125 to 933 corrected with score 85
>CPNE-LPC-01-000762 	gi|269302727|gb|ACZ32827.1| ribosomal protein S14 [Chlamydophila pneumoniae LPCoLN]: K-rich region from 3 to 53 corrected with score 41
>CPNE-LPC-01-000777 	gi|269302712|gb|ACZ32812.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 45 to 66 corrected with score 43
>CPNE-LPC-01-000788 	gi|269302701|gb|ACZ32801.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 370 to 551 corrected with score 43
>CPNE-LPC-01-000794 	gi|269302695|gb|ACZ32795.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: D-rich region from 88 to 136 corrected with score 43
>CPNE-LPC-01-000804 	gi|269302685|gb|ACZ32785.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 2 to 33 corrected with score 44
>CPNE-LPC-01-000816 	gi|269302673|gb|ACZ32773.1| histone H1-like protein Hc1 [Chlamydophila pneumoniae LPCoLN]: K-rich region from 4 to 123 corrected with score 107
>CPNE-LPC-01-000816 	gi|269302673|gb|ACZ32773.1| histone H1-like protein Hc1 [Chlamydophila pneumoniae LPCoLN]: A-rich region from 67 to 109 corrected with score 41
>CPNE-LPC-01-000821 	gi|269302668|gb|ACZ32768.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 6 to 87 corrected with score 53
>CPNE-LPC-01-000823 	gi|269302666|gb|ACZ32766.1| putative DNA translocase FtsK [Chlamydophila pneumoniae LPCoLN]: F-rich region from 57 to 84 corrected with score 45
>CPNE-LPC-01-000827 	gi|269302662|gb|ACZ32762.1| sodium:alanine symporter family protein [Chlamydophila pneumoniae LPCoLN]: V-rich region from 295 to 321 corrected with score 42
>CPNE-LPC-01-000850 	gi|269302639|gb|ACZ32739.1| putative outer membrane protein [Chlamydophila pneumoniae LPCoLN]: T-rich region from 87 to 137 corrected with score 52
>CPNE-LPC-01-000851 	gi|269302638|gb|ACZ32738.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 707 to 742 corrected with score 46
>CPNE-LPC-01-000854 	gi|269302635|gb|ACZ32735.1| SNF2/helicase domain protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 109 to 144 corrected with score 48
>CPNE-LPC-01-000859 	gi|269302630|gb|ACZ32730.1| putative GTP-binding protein Era [Chlamydophila pneumoniae LPCoLN]: E-rich region from 166 to 185 corrected with score 41
>CPNE-LPC-01-000871 	gi|269302618|gb|ACZ32718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Chlamydophila pneumoniae LPCoLN]: E-rich region from 287 to 333 corrected with score 50
>CPNE-LPC-01-000874 	gi|269302615|gb|ACZ32715.1| type III secretion apparatus protein, YscR/HrcR family [Chlamydophila pneumoniae LPCoLN]: L-rich region from 93 to 121 corrected with score 43
>CPNE-LPC-01-000874 	gi|269302615|gb|ACZ32715.1| type III secretion apparatus protein, YscR/HrcR family [Chlamydophila pneumoniae LPCoLN]: L-rich region from 249 to 303 corrected with score 42
>CPNE-LPC-01-000876 	gi|269302613|gb|ACZ32713.1| bacterial export protein, fliR/mopE/spaR family [Chlamydophila pneumoniae LPCoLN]: M-rich region from 165 to 282 corrected with score 45
>CPNE-LPC-01-000887 	gi|269302602|gb|ACZ32702.1| type III secretion low calcium response chaperone LcrH/SycD [Chlamydophila pneumoniae LPCoLN]: K-rich region from 186 to 231 corrected with score 48
>CPNE-LPC-01-000889 	gi|269302600|gb|ACZ32700.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: A-rich region from 56 to 488 corrected with score 154
>CPNE-LPC-01-000889 	gi|269302600|gb|ACZ32700.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 2 to 160 corrected with score 65
>CPNE-LPC-01-000890 	gi|269302599|gb|ACZ32699.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 2 to 441 corrected with score 217
>CPNE-LPC-01-000890 	gi|269302599|gb|ACZ32699.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: A-rich region from 177 to 310 corrected with score 90
>CPNE-LPC-01-000905 	gi|269302584|gb|ACZ32684.1| extracellular repeat, HAF family/autotransporter beta-domain protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 81 to 366 corrected with score 52
>CPNE-LPC-01-000917 	gi|269302572|gb|ACZ32672.1| tolA protein-like protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 46 to 121 corrected with score 65
>CPNE-LPC-01-000932 	gi|269302557|gb|ACZ32657.1| DNA topoisomerase I [Chlamydophila pneumoniae LPCoLN]: K-rich region from 737 to 784 corrected with score 69
>CPNE-LPC-01-000932 	gi|269302557|gb|ACZ32657.1| DNA topoisomerase I [Chlamydophila pneumoniae LPCoLN]: E-rich region from 437 to 470 corrected with score 42
>CPNE-LPC-01-000945 	gi|269302544|gb|ACZ32644.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 59 to 200 corrected with score 52
>CPNE-LPC-01-000954 	gi|269302535|gb|ACZ32635.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: H-rich region from 274 to 279 corrected with score 40
>CPNE-LPC-01-000958 	gi|269302531|gb|ACZ32631.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 119 to 138 corrected with score 45
>CPNE-LPC-01-000973 	gi|269302516|gb|ACZ32616.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 22 to 632 corrected with score 136
>CPNE-LPC-01-000973 	gi|269302516|gb|ACZ32616.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: A-rich region from 391 to 457 corrected with score 74
>CPNE-LPC-01-000974 	gi|269302515|gb|ACZ32615.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 818 to 847 corrected with score 45
>CPNE-LPC-01-000975 	gi|269302514|gb|ACZ32614.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: S-rich region from 336 to 520 corrected with score 42
>CPNE-LPC-01-000991 	gi|269302498|gb|ACZ32598.1| type III secretion apparatus protein, YscD/HrpQ family [Chlamydophila pneumoniae LPCoLN]: E-rich region from 114 to 359 corrected with score 176
>CPNE-LPC-01-000991 	gi|269302498|gb|ACZ32598.1| type III secretion apparatus protein, YscD/HrpQ family [Chlamydophila pneumoniae LPCoLN]: S-rich region from 118 to 363 corrected with score 60
>CPNE-LPC-01-000991 	gi|269302498|gb|ACZ32598.1| type III secretion apparatus protein, YscD/HrpQ family [Chlamydophila pneumoniae LPCoLN]: E-rich region from 518 to 539 corrected with score 43
>CPNE-LPC-01-000996 	gi|269302493|gb|ACZ32593.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 13 to 149 corrected with score 97
>CPNE-LPC-01-000997 	gi|269302492|gb|ACZ32592.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 2 to 87 corrected with score 53
>CPNE-LPC-01-000997 	gi|269302492|gb|ACZ32592.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 249 to 277 corrected with score 47
>CPNE-LPC-01-001000 	gi|269302489|gb|ACZ32589.1| type II/III secretion system protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 52 to 252 corrected with score 52
>CPNE-LPC-01-001000 	gi|269302489|gb|ACZ32589.1| type II/III secretion system protein [Chlamydophila pneumoniae LPCoLN]: T-rich region from 732 to 802 corrected with score 40
>CPNE-LPC-01-001006 	gi|269302483|gb|ACZ32583.1| ribosomal protein S2 [Chlamydophila pneumoniae LPCoLN]: E-rich region from 251 to 266 corrected with score 40
>CPNE-LPC-01-001011 	gi|269302478|gb|ACZ32578.1| FeS assembly protein SufB [Chlamydophila pneumoniae LPCoLN]: S-rich region from 334 to 428 corrected with score 41
>CPNE-LPC-01-001027 	gi|269302462|gb|ACZ32562.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: P-rich region from 137 to 189 corrected with score 50
>CPNE-LPC-01-001028 	gi|269302461|gb|ACZ32561.1| hypothetical protein CPK_ORF00077 [Chlamydophila pneumoniae LPCoLN]: P-rich region from 80 to 122 corrected with score 54
>CPNE-LPC-01-001028 	gi|269302461|gb|ACZ32561.1| hypothetical protein CPK_ORF00077 [Chlamydophila pneumoniae LPCoLN]: S-rich region from 18 to 137 corrected with score 51
>CPNE-LPC-01-001033 	gi|269302456|gb|ACZ32556.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila pneumoniae LPCoLN]: H-rich region from 172 to 187 corrected with score 41
>CPNE-LPC-01-001040 	gi|269302449|gb|ACZ32549.1| regulatory protein UhpC-like protein [Chlamydophila pneumoniae LPCoLN]: W-rich region from 127 to 139 corrected with score 40
>CPNE-LPC-01-001040 	gi|269302449|gb|ACZ32549.1| regulatory protein UhpC-like protein [Chlamydophila pneumoniae LPCoLN]: Y-rich region from 27 to 47 corrected with score 40
>CPNE-LPC-01-001075 	gi|269302414|gb|ACZ32514.1| ribosomal protein L15 [Chlamydophila pneumoniae LPCoLN]: G-rich region from 21 to 55 corrected with score 42
>CPNE-LPC-01-001076 	gi|269302413|gb|ACZ32513.1| preprotein translocase, SecY subunit [Chlamydophila pneumoniae LPCoLN]: I-rich region from 230 to 251 corrected with score 44
>CPNE-LPC-01-001082 	gi|269302407|gb|ACZ32507.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: E-rich region from 109 to 191 corrected with score 66
>CPNE-LPC-01-001082 	gi|269302407|gb|ACZ32507.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: K-rich region from 127 to 157 corrected with score 51
>CPNE-LPC-01-001083 	gi|269302406|gb|ACZ32506.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]: Q-rich region from 69 to 241 corrected with score 82
>CPNE-LPC-01-001092 	gi|269302397|gb|ACZ32497.1| ADP/ATP carrier protein family [Chlamydophila pneumoniae LPCoLN]: I-rich region from 467 to 499 corrected with score 43
>CPNE-TW1-01-000007 	gi|33241343|ref|NP_876284.1| hypothetical protein CpB0008 [Chlamydophila pneumoniae TW-183]: E-rich region from 565 to 787 corrected with score 69
>CPNE-TW1-01-000007 	gi|33241343|ref|NP_876284.1| hypothetical protein CpB0008 [Chlamydophila pneumoniae TW-183]: I-rich region from 116 to 140 corrected with score 41
>CPNE-TW1-01-000007 	gi|33241343|ref|NP_876284.1| hypothetical protein CpB0008 [Chlamydophila pneumoniae TW-183]: I-rich region from 226 to 250 corrected with score 41
>CPNE-TW1-01-000009 	gi|33241345|ref|NP_876286.1| hypothetical protein CpB0010 [Chlamydophila pneumoniae TW-183]: E-rich region from 13 to 190 corrected with score 72
>CPNE-TW1-01-000011 	gi|33241347|ref|NP_876288.1| hypothetical protein CpB0012 [Chlamydophila pneumoniae TW-183]: E-rich region from 269 to 444 corrected with score 71
>CPNE-TW1-01-000012 	gi|33241348|ref|NP_876289.1| hypothetical protein CpB0013 [Chlamydophila pneumoniae TW-183]: I-rich region from 33 to 85 corrected with score 44
>CPNE-TW1-01-000013 	gi|33241349|ref|NP_876290.1| hypothetical protein CpB0014 [Chlamydophila pneumoniae TW-183]: E-rich region from 99 to 273 corrected with score 78
>CPNE-TW1-01-000013 	gi|33241349|ref|NP_876290.1| hypothetical protein CpB0014 [Chlamydophila pneumoniae TW-183]: K-rich region from 463 to 522 corrected with score 45
>CPNE-TW1-01-000014 	gi|33241350|ref|NP_876291.1| outer membrane protein 7 [Chlamydophila pneumoniae TW-183]: S-rich region from 24 to 351 corrected with score 115
>CPNE-TW1-01-000016 	gi|33241352|ref|NP_876293.1| to outer membrane protein 5 [Chlamydophila pneumoniae TW-183]: S-rich region from 19 to 162 corrected with score 59
>CPNE-TW1-01-000017 	gi|33241353|ref|NP_876294.1| outer membrane protein 5 [Chlamydophila pneumoniae TW-183]: S-rich region from 4 to 402 corrected with score 122
>CPNE-TW1-01-000018 	gi|33241354|ref|NP_876295.1| outer membrane protein 5 [Chlamydophila pneumoniae TW-183]: S-rich region from 3 to 407 corrected with score 123
>CPNE-TW1-01-000021 	gi|33241357|ref|NP_876298.1| outer membrane protein 11 [Chlamydophila pneumoniae TW-183]: S-rich region from 14 to 452 corrected with score 67
>CPNE-TW1-01-000026 	gi|33241362|ref|NP_876303.1| putative ABC transporter protein ATPase [Chlamydophila pneumoniae TW-183]: K-rich region from 244 to 305 corrected with score 41
>CPNE-TW1-01-000029 	gi|33241365|ref|NP_876306.1| hypothetical protein CpB0030 [Chlamydophila pneumoniae TW-183]: S-rich region from 90 to 268 corrected with score 82
>CPNE-TW1-01-000029 	gi|33241365|ref|NP_876306.1| hypothetical protein CpB0030 [Chlamydophila pneumoniae TW-183]: K-rich region from 183 to 245 corrected with score 53
>CPNE-TW1-01-000029 	gi|33241365|ref|NP_876306.1| hypothetical protein CpB0030 [Chlamydophila pneumoniae TW-183]: I-rich region from 34 to 81 corrected with score 47
>CPNE-TW1-01-000030 	gi|33241366|ref|NP_876307.1| lon ATP-dependent proteinase [Chlamydophila pneumoniae TW-183]: E-rich region from 13 to 37 corrected with score 40
>CPNE-TW1-01-000031 	gi|33241367|ref|NP_876308.1| hypothetical protein CpB0032 [Chlamydophila pneumoniae TW-183]: I-rich region from 73 to 101 corrected with score 43
>CPNE-TW1-01-000034 	gi|33241370|ref|NP_876311.1| 30S ribosomal protein S21 [Chlamydophila pneumoniae TW-183]: K-rich region from 20 to 58 corrected with score 40
>CPNE-TW1-01-000035 	gi|33241371|ref|NP_876312.1| heat shock protein dnaJ [Chlamydophila pneumoniae TW-183]: G-rich region from 67 to 133 corrected with score 61
>CPNE-TW1-01-000037 	gi|33241373|ref|NP_876314.1| hypothetical protein CpB0038 [Chlamydophila pneumoniae TW-183]: P-rich region from 108 to 146 corrected with score 79
>CPNE-TW1-01-000044 	gi|33241380|ref|NP_876321.1| hypothetical protein CpB0045 [Chlamydophila pneumoniae TW-183]: E-rich region from 255 to 447 corrected with score 61
>CPNE-TW1-01-000046 	gi|33241382|ref|NP_876323.1| HB3/HB4 fusion protein [Chlamydophila pneumoniae TW-183]: E-rich region from 351 to 460 corrected with score 62
>CPNE-TW1-01-000046 	gi|33241382|ref|NP_876323.1| HB3/HB4 fusion protein [Chlamydophila pneumoniae TW-183]: K-rich region from 660 to 713 corrected with score 47
>CPNE-TW1-01-000049 	gi|33241385|ref|NP_876326.1| hypothetical protein CpB0050 [Chlamydophila pneumoniae TW-183]: L-rich region from 105 to 139 corrected with score 49
>CPNE-TW1-01-000050 	gi|33241386|ref|NP_876327.1| hypothetical protein CpB0051 [Chlamydophila pneumoniae TW-183]: L-rich region from 53 to 85 corrected with score 49
>CPNE-TW1-01-000062 	gi|33241398|ref|NP_876339.1| hypothetical protein CpB0063 [Chlamydophila pneumoniae TW-183]: S-rich region from 3 to 424 corrected with score 91
>CPNE-TW1-01-000062 	gi|33241398|ref|NP_876339.1| hypothetical protein CpB0063 [Chlamydophila pneumoniae TW-183]: K-rich region from 45 to 120 corrected with score 48
>CPNE-TW1-01-000063 	gi|33241399|ref|NP_876340.1| hypothetical protein CpB0064 [Chlamydophila pneumoniae TW-183]: L-rich region from 45 to 82 corrected with score 49
>CPNE-TW1-01-000064 	gi|33241400|ref|NP_876341.1| hypothetical protein CpB0065 [Chlamydophila pneumoniae TW-183]: L-rich region from 47 to 68 corrected with score 40
>CPNE-TW1-01-000065 	gi|33241401|ref|NP_876342.1| hypothetical protein CpB0066 [Chlamydophila pneumoniae TW-183]: V-rich region from 247 to 298 corrected with score 43
>CPNE-TW1-01-000067 	gi|33241403|ref|NP_876344.1| hypothetical protein CpB0068 [Chlamydophila pneumoniae TW-183]: I-rich region from 34 to 83 corrected with score 49
>CPNE-TW1-01-000068 	gi|33241404|ref|NP_876345.1| hypothetical protein CpB0069 [Chlamydophila pneumoniae TW-183]: E-rich region from 25 to 99 corrected with score 53
>CPNE-TW1-01-000103 	gi|33241439|ref|NP_876380.1| hypothetical protein CpB0104 [Chlamydophila pneumoniae TW-183]: S-rich region from 240 to 271 corrected with score 40
>CPNE-TW1-01-000125 	gi|33241461|ref|NP_876402.1| hypothetical protein CpB0126 [Chlamydophila pneumoniae TW-183]: E-rich region from 29 to 170 corrected with score 59
>CPNE-TW1-01-000127 	gi|33241463|ref|NP_876404.1| hypothetical protein CpB0128 [Chlamydophila pneumoniae TW-183]: E-rich region from 357 to 463 corrected with score 48
>CPNE-TW1-01-000130 	gi|33241466|ref|NP_876407.1| hypothetical protein CpB0131 [Chlamydophila pneumoniae TW-183]: L-rich region from 29 to 77 corrected with score 47
>CPNE-TW1-01-000131 	gi|33241467|ref|NP_876408.1| hypothetical protein CpB0132 [Chlamydophila pneumoniae TW-183]: L-rich region from 30 to 77 corrected with score 48
>CPNE-TW1-01-000144 	gi|33241480|ref|NP_876421.1| ClpB [Chlamydophila pneumoniae TW-183]: E-rich region from 415 to 537 corrected with score 64
>CPNE-TW1-01-000147 	gi|33241483|ref|NP_876424.1| hypothetical protein CpB0148 [Chlamydophila pneumoniae TW-183]: A-rich region from 2 to 88 corrected with score 43
>CPNE-TW1-01-000150 	gi|33241486|ref|NP_876427.1| hypothetical protein CpB0151 [Chlamydophila pneumoniae TW-183]: E-rich region from 1398 to 1509 corrected with score 56
>CPNE-TW1-01-000166 	gi|33241502|ref|NP_876443.1| hypothetical protein CpB0167 [Chlamydophila pneumoniae TW-183]: L-rich region from 29 to 82 corrected with score 63
>CPNE-TW1-01-000176 	gi|33241512|ref|NP_876453.1| hypothetical protein CpB0177 [Chlamydophila pneumoniae TW-183]: I-rich region from 58 to 115 corrected with score 50
>CPNE-TW1-01-000178 	gi|33241514|ref|NP_876455.1| hypothetical protein CpB0179 [Chlamydophila pneumoniae TW-183]: S-rich region from 121 to 154 corrected with score 41
>CPNE-TW1-01-000188 	gi|33241524|ref|NP_876465.1| inclusion membrane protein A [Chlamydophila pneumoniae TW-183]: Q-rich region from 219 to 336 corrected with score 64
>CPNE-TW1-01-000215 	gi|33241551|ref|NP_876492.1| hypothetical protein CpB0216 [Chlamydophila pneumoniae TW-183]: L-rich region from 45 to 92 corrected with score 42
>CPNE-TW1-01-000218 	gi|33241554|ref|NP_876495.1| hypothetical protein CpB0219 [Chlamydophila pneumoniae TW-183]: L-rich region from 31 to 86 corrected with score 44
>CPNE-TW1-01-000230 	gi|33241566|ref|NP_876507.1| hypothetical protein CpB0231 [Chlamydophila pneumoniae TW-183]: K-rich region from 140 to 223 corrected with score 59
>CPNE-TW1-01-000230 	gi|33241566|ref|NP_876507.1| hypothetical protein CpB0231 [Chlamydophila pneumoniae TW-183]: L-rich region from 32 to 89 corrected with score 43
>CPNE-TW1-01-000235 	gi|33241571|ref|NP_876512.1| hypothetical protein CpB0236 [Chlamydophila pneumoniae TW-183]: K-rich region from 126 to 216 corrected with score 53
>CPNE-TW1-01-000245 	gi|33241581|ref|NP_876522.1| hypothetical protein CpB0246 [Chlamydophila pneumoniae TW-183]: G-rich region from 316 to 364 corrected with score 81
>CPNE-TW1-01-000245 	gi|33241581|ref|NP_876522.1| hypothetical protein CpB0246 [Chlamydophila pneumoniae TW-183]: P-rich region from 366 to 381 corrected with score 52
>CPNE-TW1-01-000245 	gi|33241581|ref|NP_876522.1| hypothetical protein CpB0246 [Chlamydophila pneumoniae TW-183]: A-rich region from 164 to 237 corrected with score 47
>CPNE-TW1-01-000247 	gi|33241583|ref|NP_876524.1| hypothetical protein CpB0248 [Chlamydophila pneumoniae TW-183]: V-rich region from 26 to 57 corrected with score 44
>CPNE-TW1-01-000248 	gi|33241584|ref|NP_876525.1| hypothetical protein CpB0249 [Chlamydophila pneumoniae TW-183]: V-rich region from 19 to 60 corrected with score 40
>CPNE-TW1-01-000252 	gi|33241588|ref|NP_876529.1| 30S ribosomal protein S9 [Chlamydophila pneumoniae TW-183]: K-rich region from 93 to 134 corrected with score 40
>CPNE-TW1-01-000266 	gi|33241602|ref|NP_876543.1| YecA [Chlamydophila pneumoniae TW-183]: K-rich region from 20 to 117 corrected with score 41
>CPNE-TW1-01-000274 	gi|33241610|ref|NP_876551.1| hypothetical protein CpB0275 [Chlamydophila pneumoniae TW-183]: N-rich region from 39 to 111 corrected with score 44
>CPNE-TW1-01-000284 	gi|33241620|ref|NP_876561.1| hypothetical protein CpB0285 [Chlamydophila pneumoniae TW-183]: V-rich region from 76 to 136 corrected with score 65
>CPNE-TW1-01-000289 	gi|33241625|ref|NP_876566.1| extreme acid resistance protein xasA [Chlamydophila pneumoniae TW-183]: W-rich region from 81 to 98 corrected with score 40
>CPNE-TW1-01-000299 	gi|33241635|ref|NP_876576.1| inclusion membrane protein B [Chlamydophila pneumoniae TW-183]: V-rich region from 99 to 172 corrected with score 47
>CPNE-TW1-01-000300 	gi|33241636|ref|NP_876577.1| inclusion membrane protein C [Chlamydophila pneumoniae TW-183]: I-rich region from 128 to 151 corrected with score 46
>CPNE-TW1-01-000309 	gi|33241645|ref|NP_876586.1| OmpH-like outer membrane protein [Chlamydophila pneumoniae TW-183]: E-rich region from 33 to 144 corrected with score 57
>CPNE-TW1-01-000326 	gi|33241662|ref|NP_876603.1| translation initiation factor IF-2 [Chlamydophila pneumoniae TW-183]: S-rich region from 39 to 116 corrected with score 76
>CPNE-TW1-01-000326 	gi|33241662|ref|NP_876603.1| translation initiation factor IF-2 [Chlamydophila pneumoniae TW-183]: K-rich region from 156 to 301 corrected with score 52
>CPNE-TW1-01-000326 	gi|33241662|ref|NP_876603.1| translation initiation factor IF-2 [Chlamydophila pneumoniae TW-183]: K-rich region from 2 to 61 corrected with score 42
>CPNE-TW1-01-000332 	gi|33241668|ref|NP_876609.1| low calcium response D [Chlamydophila pneumoniae TW-183]: I-rich region from 27 to 141 corrected with score 50
>CPNE-TW1-01-000333 	gi|33241669|ref|NP_876610.1| CopN [Chlamydophila pneumoniae TW-183]: K-rich region from 59 to 91 corrected with score 49
>CPNE-TW1-01-000333 	gi|33241669|ref|NP_876610.1| CopN [Chlamydophila pneumoniae TW-183]: A-rich region from 2 to 36 corrected with score 40
>CPNE-TW1-01-000339 	gi|33241675|ref|NP_876616.1| hypothetical protein CpB0340 [Chlamydophila pneumoniae TW-183]: K-rich region from 51 to 116 corrected with score 74
>CPNE-TW1-01-000340 	gi|33241676|ref|NP_876617.1| hypothetical protein CpB0341 [Chlamydophila pneumoniae TW-183]: S-rich region from 4 to 463 corrected with score 167
>CPNE-TW1-01-000340 	gi|33241676|ref|NP_876617.1| hypothetical protein CpB0341 [Chlamydophila pneumoniae TW-183]: G-rich region from 544 to 562 corrected with score 44
>CPNE-TW1-01-000341 	gi|33241677|ref|NP_876618.1| LtuB [Chlamydophila pneumoniae TW-183]: K-rich region from 3 to 72 corrected with score 54
>CPNE-TW1-01-000348 	gi|33241684|ref|NP_876625.1| putative metalloproteinase [Chlamydophila pneumoniae TW-183]: F-rich region from 600 to 620 corrected with score 41
>CPNE-TW1-01-000362 	gi|33241698|ref|NP_876639.1| hypothetical protein CpB0365 [Chlamydophila pneumoniae TW-183]: V-rich region from 30 to 75 corrected with score 40
>CPNE-TW1-01-000365 	gi|33241701|ref|NP_876642.1| GTP-binding protein LepA [Chlamydophila pneumoniae TW-183]: K-rich region from 567 to 587 corrected with score 41
>CPNE-TW1-01-000372 	gi|33241708|ref|NP_876649.1| hypothetical protein CpB0375 [Chlamydophila pneumoniae TW-183]: I-rich region from 38 to 83 corrected with score 44
>CPNE-TW1-01-000374 	gi|33241710|ref|NP_876651.1| hypothetical protein CpB0377 [Chlamydophila pneumoniae TW-183]: V-rich region from 46 to 110 corrected with score 40
>CPNE-TW1-01-000379 	gi|33241715|ref|NP_876656.1| hypothetical protein CpB0382 [Chlamydophila pneumoniae TW-183]: P-rich region from 83 to 127 corrected with score 46
>CPNE-TW1-01-000380 	gi|33241716|ref|NP_876657.1| hypothetical protein CpB0383 [Chlamydophila pneumoniae TW-183]: I-rich region from 41 to 97 corrected with score 56
>CPNE-TW1-01-000384 	gi|33241720|ref|NP_876661.1| hypothetical protein CpB0387 [Chlamydophila pneumoniae TW-183]: L-rich region from 42 to 103 corrected with score 43
>CPNE-TW1-01-000388 	gi|33241724|ref|NP_876665.1| hypothetical protein CpB0391 [Chlamydophila pneumoniae TW-183]: E-rich region from 27 to 127 corrected with score 54
>CPNE-TW1-01-000393 	gi|33241729|ref|NP_876670.1| putative histone-like protein 2 [Chlamydophila pneumoniae TW-183]: K-rich region from 5 to 157 corrected with score 126
>CPNE-TW1-01-000393 	gi|33241729|ref|NP_876670.1| putative histone-like protein 2 [Chlamydophila pneumoniae TW-183]: A-rich region from 12 to 128 corrected with score 60
>CPNE-TW1-01-000414 	gi|33241750|ref|NP_876691.1| hypothetical protein CpB0417 [Chlamydophila pneumoniae TW-183]: P-rich region from 248 to 272 corrected with score 41
>CPNE-TW1-01-000415 	gi|33241751|ref|NP_876692.1| hypothetical protein CpB0418 [Chlamydophila pneumoniae TW-183]: S-rich region from 20 to 192 corrected with score 103
>CPNE-TW1-01-000433 	gi|33241769|ref|NP_876710.1| hypothetical protein CpB0436 [Chlamydophila pneumoniae TW-183]: C-rich region from 10 to 16 corrected with score 42
>CPNE-TW1-01-000435 	gi|33241771|ref|NP_876712.1| hypothetical protein CpB0438 [Chlamydophila pneumoniae TW-183]: D-rich region from 129 to 144 corrected with score 54
>CPNE-TW1-01-000450 	gi|33241786|ref|NP_876727.1| class III stress response-related ATPase [Chlamydophila pneumoniae TW-183]: S-rich region from 153 to 186 corrected with score 61
>CPNE-TW1-01-000450 	gi|33241786|ref|NP_876727.1| class III stress response-related ATPase [Chlamydophila pneumoniae TW-183]: E-rich region from 441 to 498 corrected with score 55
>CPNE-TW1-01-000452 	gi|33241788|ref|NP_876729.1| hypothetical protein CpB0455 [Chlamydophila pneumoniae TW-183]: I-rich region from 17 to 70 corrected with score 41
>CPNE-TW1-01-000455 	gi|33241791|ref|NP_876732.1| hypothetical protein CpB0458 [Chlamydophila pneumoniae TW-183]: P-rich region from 143 to 157 corrected with score 53
>CPNE-TW1-01-000456 	gi|33241792|ref|NP_876733.1| hypothetical protein CpB0459 [Chlamydophila pneumoniae TW-183]: S-rich region from 195 to 404 corrected with score 77
>CPNE-TW1-01-000456 	gi|33241792|ref|NP_876733.1| hypothetical protein CpB0459 [Chlamydophila pneumoniae TW-183]: Q-rich region from 346 to 380 corrected with score 62
>CPNE-TW1-01-000457 	gi|33241793|ref|NP_876734.1| Omp11 [Chlamydophila pneumoniae TW-183]: S-rich region from 10 to 811 corrected with score 330
>CPNE-TW1-01-000457 	gi|33241793|ref|NP_876734.1| Omp11 [Chlamydophila pneumoniae TW-183]: T-rich region from 45 to 680 corrected with score 100
>CPNE-TW1-01-000457 	gi|33241793|ref|NP_876734.1| Omp11 [Chlamydophila pneumoniae TW-183]: P-rich region from 862 to 884 corrected with score 40
>CPNE-TW1-01-000459 	gi|33241795|ref|NP_876736.1| Omp5 [Chlamydophila pneumoniae TW-183]: S-rich region from 2 to 593 corrected with score 129
>CPNE-TW1-01-000460 	gi|33241796|ref|NP_876737.1| outer membrane protein 11 [Chlamydophila pneumoniae TW-183]: S-rich region from 21 to 555 corrected with score 180
>CPNE-TW1-01-000461 	gi|33241797|ref|NP_876738.1| outer membrane protein 10 [Chlamydophila pneumoniae TW-183]: S-rich region from 11 to 527 corrected with score 150
>CPNE-TW1-01-000464 	gi|33241800|ref|NP_876741.1| outer membrane protein 5 [Chlamydophila pneumoniae TW-183]: S-rich region from 11 to 516 corrected with score 154
>CPNE-TW1-01-000464 	gi|33241800|ref|NP_876741.1| outer membrane protein 5 [Chlamydophila pneumoniae TW-183]: T-rich region from 549 to 597 corrected with score 51
>CPNE-TW1-01-000465 	gi|33241801|ref|NP_876742.1| outer membrane protein 4 [Chlamydophila pneumoniae TW-183]: S-rich region from 11 to 502 corrected with score 134
>CPNE-TW1-01-000467 	gi|33241803|ref|NP_876744.1| outer membrane protein 14 [Chlamydophila pneumoniae TW-183]: S-rich region from 64 to 490 corrected with score 94
>CPNE-TW1-01-000467 	gi|33241803|ref|NP_876744.1| outer membrane protein 14 [Chlamydophila pneumoniae TW-183]: P-rich region from 295 to 326 corrected with score 55
>CPNE-TW1-01-000467 	gi|33241803|ref|NP_876744.1| outer membrane protein 14 [Chlamydophila pneumoniae TW-183]: T-rich region from 475 to 649 corrected with score 50
>CPNE-TW1-01-000468 	gi|33241804|ref|NP_876745.1| outer membrane protein 11 [Chlamydophila pneumoniae TW-183]: S-rich region from 46 to 458 corrected with score 84
>CPNE-TW1-01-000481 	gi|33241817|ref|NP_876758.1| outer membrane protein 11 [Chlamydophila pneumoniae TW-183]: S-rich region from 90 to 344 corrected with score 49
>CPNE-TW1-01-000481 	gi|33241817|ref|NP_876758.1| outer membrane protein 11 [Chlamydophila pneumoniae TW-183]: T-rich region from 460 to 527 corrected with score 48
>CPNE-TW1-01-000482 	gi|33241818|ref|NP_876759.1| outer membrane protein 5 [Chlamydophila pneumoniae TW-183]: N-rich region from 147 to 306 corrected with score 60
>CPNE-TW1-01-000486 	gi|33241822|ref|NP_876763.1| outer membrane protein 11 [Chlamydophila pneumoniae TW-183]: S-rich region from 672 to 800 corrected with score 54
>CPNE-TW1-01-000487 	gi|33241823|ref|NP_876764.1| hypothetical protein CpB0490 [Chlamydophila pneumoniae TW-183]: S-rich region from 2 to 637 corrected with score 119
>CPNE-TW1-01-000488 	gi|33241824|ref|NP_876765.1| hypothetical protein CpB0491 [Chlamydophila pneumoniae TW-183]: S-rich region from 7 to 427 corrected with score 82
>CPNE-TW1-01-000489 	gi|33241825|ref|NP_876766.1| hypothetical protein CpB0492 [Chlamydophila pneumoniae TW-183]: F-rich region from 14 to 52 corrected with score 45
>CPNE-TW1-01-000490 	gi|33241826|ref|NP_876767.1| hypothetical protein CpB0493 [Chlamydophila pneumoniae TW-183]: V-rich region from 45 to 82 corrected with score 43
>CPNE-TW1-01-000498 	gi|33241834|ref|NP_876775.1| hypothetical protein CpB0503 [Chlamydophila pneumoniae TW-183]: P-rich region from 67 to 154 corrected with score 174
>CPNE-TW1-01-000514 	gi|33241850|ref|NP_876791.1| hypothetical protein CpB0519 [Chlamydophila pneumoniae TW-183]: E-rich region from 316 to 384 corrected with score 55
>CPNE-TW1-01-000514 	gi|33241850|ref|NP_876791.1| hypothetical protein CpB0519 [Chlamydophila pneumoniae TW-183]: S-rich region from 2 to 86 corrected with score 46
>CPNE-TW1-01-000517 	gi|33241853|ref|NP_876794.1| hypothetical protein CpB0522 [Chlamydophila pneumoniae TW-183]: E-rich region from 7 to 63 corrected with score 55
>CPNE-TW1-01-000518 	gi|33241854|ref|NP_876795.1| molecular chaperone DnaK [Chlamydophila pneumoniae TW-183]: E-rich region from 493 to 660 corrected with score 64
>CPNE-TW1-01-000518 	gi|33241854|ref|NP_876795.1| molecular chaperone DnaK [Chlamydophila pneumoniae TW-183]: S-rich region from 599 to 643 corrected with score 46
>CPNE-TW1-01-000520 	gi|33241856|ref|NP_876797.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183]: K-rich region from 655 to 674 corrected with score 43
>CPNE-TW1-01-000532 	gi|33241868|ref|NP_876809.1| hypothetical protein CpB0537 [Chlamydophila pneumoniae TW-183]: T-rich region from 173 to 226 corrected with score 43
>CPNE-TW1-01-000533 	gi|33241869|ref|NP_876810.1| hypothetical protein CpB0538 [Chlamydophila pneumoniae TW-183]: I-rich region from 40 to 88 corrected with score 40
>CPNE-TW1-01-000541 	gi|33241877|ref|NP_876818.1| hypothetical protein CpB0546 [Chlamydophila pneumoniae TW-183]: E-rich region from 25 to 174 corrected with score 56
>CPNE-TW1-01-000543 	gi|33241879|ref|NP_876820.1| branched-chain alpha-keto acid dehydrogenase subunit E2 [Chlamydophila pneumoniae TW-183]: S-rich region from 82 to 108 corrected with score 40
>CPNE-TW1-01-000556 	gi|33241892|ref|NP_876833.1| outer membrane protein omp5 [Chlamydophila pneumoniae TW-183]: S-rich region from 24 to 1270 corrected with score 354
>CPNE-TW1-01-000556 	gi|33241892|ref|NP_876833.1| outer membrane protein omp5 [Chlamydophila pneumoniae TW-183]: A-rich region from 529 to 570 corrected with score 43
>CPNE-TW1-01-000559 	gi|33241895|ref|NP_876836.1| iron transport protein [Chlamydophila pneumoniae TW-183]: L-rich region from 185 to 241 corrected with score 51
>CPNE-TW1-01-000560 	gi|33241896|ref|NP_876837.1| GTPase ObgE [Chlamydophila pneumoniae TW-183]: G-rich region from 31 to 43 corrected with score 43
>CPNE-TW1-01-000568 	gi|33241904|ref|NP_876845.1| 30S ribosomal protein S12 [Chlamydophila pneumoniae TW-183]: K-rich region from 9 to 51 corrected with score 41
>CPNE-TW1-01-000581 	gi|33241917|ref|NP_876858.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila pneumoniae TW-183]: S-rich region from 136 to 244 corrected with score 48
>CPNE-TW1-01-000589 	gi|33241925|ref|NP_876866.1| hypothetical protein CpB0594 [Chlamydophila pneumoniae TW-183]: S-rich region from 6 to 751 corrected with score 229
>CPNE-TW1-01-000589 	gi|33241925|ref|NP_876866.1| hypothetical protein CpB0594 [Chlamydophila pneumoniae TW-183]: T-rich region from 554 to 664 corrected with score 111
>CPNE-TW1-01-000589 	gi|33241925|ref|NP_876866.1| hypothetical protein CpB0594 [Chlamydophila pneumoniae TW-183]: T-rich region from 9 to 50 corrected with score 61
>CPNE-TW1-01-000589 	gi|33241925|ref|NP_876866.1| hypothetical protein CpB0594 [Chlamydophila pneumoniae TW-183]: P-rich region from 449 to 461 corrected with score 48
>CPNE-TW1-01-000593 	gi|33241929|ref|NP_876870.1| peptide chain release factor 2 [Chlamydophila pneumoniae TW-183]: Q-rich region from 158 to 199 corrected with score 40
>CPNE-TW1-01-000604 	gi|33241940|ref|NP_876881.1| hypothetical protein CpB0609 [Chlamydophila pneumoniae TW-183]: Q-rich region from 189 to 613 corrected with score 146
>CPNE-TW1-01-000604 	gi|33241940|ref|NP_876881.1| hypothetical protein CpB0609 [Chlamydophila pneumoniae TW-183]: E-rich region from 340 to 543 corrected with score 46
>CPNE-TW1-01-000633 	gi|33241969|ref|NP_876910.1| plastidic ATP/ADP-transporter [Chlamydophila pneumoniae TW-183]: I-rich region from 467 to 499 corrected with score 43
>CPNE-TW1-01-000643 	gi|33241979|ref|NP_876920.1| hypothetical protein CpB0648 [Chlamydophila pneumoniae TW-183]: Q-rich region from 69 to 241 corrected with score 82
>CPNE-TW1-01-000644 	gi|33241980|ref|NP_876921.1| hypothetical protein CpB0649 [Chlamydophila pneumoniae TW-183]: E-rich region from 109 to 191 corrected with score 66
>CPNE-TW1-01-000644 	gi|33241980|ref|NP_876921.1| hypothetical protein CpB0649 [Chlamydophila pneumoniae TW-183]: K-rich region from 127 to 157 corrected with score 51
>CPNE-TW1-01-000650 	gi|33241986|ref|NP_876927.1| preprotein translocase subunit SecY [Chlamydophila pneumoniae TW-183]: I-rich region from 230 to 251 corrected with score 44
>CPNE-TW1-01-000651 	gi|33241987|ref|NP_876928.1| 50S ribosomal protein L15 [Chlamydophila pneumoniae TW-183]: G-rich region from 21 to 55 corrected with score 42
>CPNE-TW1-01-000686 	gi|33242022|ref|NP_876963.1| hexose phosphate transport system regulatory protein [Chlamydophila pneumoniae TW-183]: W-rich region from 127 to 139 corrected with score 40
>CPNE-TW1-01-000686 	gi|33242022|ref|NP_876963.1| hexose phosphate transport system regulatory protein [Chlamydophila pneumoniae TW-183]: Y-rich region from 27 to 47 corrected with score 40
>CPNE-TW1-01-000693 	gi|33242029|ref|NP_876970.1| serine-type D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae TW-183]: H-rich region from 172 to 187 corrected with score 41
>CPNE-TW1-01-000699 	gi|33242035|ref|NP_876976.1| hypothetical protein CpB0704 [Chlamydophila pneumoniae TW-183]: S-rich region from 18 to 159 corrected with score 65
>CPNE-TW1-01-000699 	gi|33242035|ref|NP_876976.1| hypothetical protein CpB0704 [Chlamydophila pneumoniae TW-183]: P-rich region from 80 to 122 corrected with score 45
>CPNE-TW1-01-000700 	gi|33242036|ref|NP_876977.1| hypothetical protein CpB0705 [Chlamydophila pneumoniae TW-183]: P-rich region from 98 to 150 corrected with score 52
>CPNE-TW1-01-000714 	gi|33242050|ref|NP_876991.1| cysteine desulfurase activator complex subunit SufB [Chlamydophila pneumoniae TW-183]: S-rich region from 334 to 428 corrected with score 41
>CPNE-TW1-01-000718 	gi|33242054|ref|NP_876995.1| 30S ribosomal protein S2 [Chlamydophila pneumoniae TW-183]: E-rich region from 251 to 266 corrected with score 40
>CPNE-TW1-01-000724 	gi|33242060|ref|NP_877001.1| outer membrane secretion protein Q [Chlamydophila pneumoniae TW-183]: K-rich region from 52 to 252 corrected with score 43
>CPNE-TW1-01-000724 	gi|33242060|ref|NP_877001.1| outer membrane secretion protein Q [Chlamydophila pneumoniae TW-183]: T-rich region from 732 to 802 corrected with score 40
>CPNE-TW1-01-000727 	gi|33242063|ref|NP_877004.1| hypothetical protein CpB0732 [Chlamydophila pneumoniae TW-183]: E-rich region from 22 to 87 corrected with score 57
>CPNE-TW1-01-000727 	gi|33242063|ref|NP_877004.1| hypothetical protein CpB0732 [Chlamydophila pneumoniae TW-183]: E-rich region from 249 to 277 corrected with score 47
>CPNE-TW1-01-000728 	gi|33242064|ref|NP_877005.1| hypothetical protein CpB0733 [Chlamydophila pneumoniae TW-183]: E-rich region from 13 to 149 corrected with score 97
>CPNE-TW1-01-000734 	gi|33242070|ref|NP_877011.1| forkhead domain-containing protein [Chlamydophila pneumoniae TW-183]: E-rich region from 114 to 354 corrected with score 160
>CPNE-TW1-01-000734 	gi|33242070|ref|NP_877011.1| forkhead domain-containing protein [Chlamydophila pneumoniae TW-183]: S-rich region from 118 to 358 corrected with score 51
>CPNE-TW1-01-000734 	gi|33242070|ref|NP_877011.1| forkhead domain-containing protein [Chlamydophila pneumoniae TW-183]: E-rich region from 513 to 534 corrected with score 43
>CPNE-TW1-01-000749 	gi|33242085|ref|NP_877026.1| hypothetical protein CpB0754 [Chlamydophila pneumoniae TW-183]: S-rich region from 336 to 475 corrected with score 41
>CPNE-TW1-01-000750 	gi|33242086|ref|NP_877027.1| hypothetical protein CpB0755 [Chlamydophila pneumoniae TW-183]: Q-rich region from 818 to 847 corrected with score 45
>CPNE-TW1-01-000751 	gi|33242087|ref|NP_877028.1| hypothetical protein CpB0756 [Chlamydophila pneumoniae TW-183]: S-rich region from 22 to 632 corrected with score 136
>CPNE-TW1-01-000751 	gi|33242087|ref|NP_877028.1| hypothetical protein CpB0756 [Chlamydophila pneumoniae TW-183]: A-rich region from 391 to 457 corrected with score 73
>CPNE-TW1-01-000765 	gi|33242101|ref|NP_877042.1| hypothetical protein CpB0770 [Chlamydophila pneumoniae TW-183]: K-rich region from 124 to 143 corrected with score 45
>CPNE-TW1-01-000769 	gi|33242105|ref|NP_877046.1| hypothetical protein CpB0774 [Chlamydophila pneumoniae TW-183]: H-rich region from 274 to 279 corrected with score 40
>CPNE-TW1-01-000778 	gi|33242114|ref|NP_877055.1| hypothetical protein CpB0783 [Chlamydophila pneumoniae TW-183]: Q-rich region from 59 to 200 corrected with score 52
>CPNE-TW1-01-000792 	gi|33242128|ref|NP_877069.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila pneumoniae TW-183]: K-rich region from 737 to 784 corrected with score 71
>CPNE-TW1-01-000792 	gi|33242128|ref|NP_877069.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydophila pneumoniae TW-183]: E-rich region from 437 to 470 corrected with score 43
>CPNE-TW1-01-000806 	gi|33242142|ref|NP_877083.1| hypothetical protein CpB0811 [Chlamydophila pneumoniae TW-183]: P-rich region from 46 to 121 corrected with score 64
>CPNE-TW1-01-000832 	gi|33242168|ref|NP_877109.1| hypothetical protein CpB0837 [Chlamydophila pneumoniae TW-183]: S-rich region from 2 to 441 corrected with score 213
>CPNE-TW1-01-000832 	gi|33242168|ref|NP_877109.1| hypothetical protein CpB0837 [Chlamydophila pneumoniae TW-183]: A-rich region from 177 to 310 corrected with score 89
>CPNE-TW1-01-000833 	gi|33242169|ref|NP_877110.1| hypothetical protein CpB0838 [Chlamydophila pneumoniae TW-183]: A-rich region from 56 to 488 corrected with score 154
>CPNE-TW1-01-000833 	gi|33242169|ref|NP_877110.1| hypothetical protein CpB0838 [Chlamydophila pneumoniae TW-183]: S-rich region from 2 to 160 corrected with score 65
>CPNE-TW1-01-000835 	gi|33242171|ref|NP_877112.1| LcrH [Chlamydophila pneumoniae TW-183]: K-rich region from 186 to 231 corrected with score 48
>CPNE-TW1-01-000847 	gi|33242183|ref|NP_877124.1| YOP proteins translocation protein T [Chlamydophila pneumoniae TW-183]: M-rich region from 165 to 282 corrected with score 45
>CPNE-TW1-01-000849 	gi|33242185|ref|NP_877126.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]: L-rich region from 93 to 121 corrected with score 43
>CPNE-TW1-01-000849 	gi|33242185|ref|NP_877126.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]: L-rich region from 249 to 303 corrected with score 42
>CPNE-TW1-01-000852 	gi|33242188|ref|NP_877129.1| secretion protein [Chlamydophila pneumoniae TW-183]: E-rich region from 287 to 333 corrected with score 50
>CPNE-TW1-01-000868 	gi|33242204|ref|NP_877145.1| GTP-binding protein EngA [Chlamydophila pneumoniae TW-183]: E-rich region from 166 to 187 corrected with score 51
>CPNE-TW1-01-000873 	gi|33242209|ref|NP_877150.1| swf/snf helicase [Chlamydophila pneumoniae TW-183]: E-rich region from 109 to 144 corrected with score 48
>CPNE-TW1-01-000876 	gi|33242212|ref|NP_877153.1| hypothetical protein CpB0881 [Chlamydophila pneumoniae TW-183]: Q-rich region from 707 to 742 corrected with score 46
>CPNE-TW1-01-000878 	gi|33242214|ref|NP_877155.1| major outer membrane protein [Chlamydophila pneumoniae TW-183]: T-rich region from 83 to 133 corrected with score 52
>CPNE-TW1-01-000900 	gi|33242236|ref|NP_877177.1| D-alanine/glycine transport protein, sodium-dependent [Chlamydophila pneumoniae TW-183]: V-rich region from 295 to 321 corrected with score 42
>CPNE-TW1-01-000904 	gi|33242240|ref|NP_877181.1| DNA translocase SpoIIIE [Chlamydophila pneumoniae TW-183]: F-rich region from 57 to 84 corrected with score 45
>CPNE-TW1-01-000911 	gi|33242247|ref|NP_877188.1| histone H1-like protein [Chlamydophila pneumoniae TW-183]: K-rich region from 14 to 114 corrected with score 107
>CPNE-TW1-01-000911 	gi|33242247|ref|NP_877188.1| histone H1-like protein [Chlamydophila pneumoniae TW-183]: A-rich region from 58 to 100 corrected with score 40
>CPNE-TW1-01-000922 	gi|33242258|ref|NP_877199.1| hypothetical protein CpB0927 [Chlamydophila pneumoniae TW-183]: K-rich region from 2 to 36 corrected with score 45
>CPNE-TW1-01-000939 	gi|33242275|ref|NP_877216.1| hypothetical protein CpB0944 [Chlamydophila pneumoniae TW-183]: Q-rich region from 370 to 551 corrected with score 43
>CPNE-TW1-01-000952 	gi|33242288|ref|NP_877229.1| hypothetical protein CpB0957 [Chlamydophila pneumoniae TW-183]: P-rich region from 54 to 66 corrected with score 40
>CPNE-TW1-01-000964 	gi|33242300|ref|NP_877241.1| 50S ribosomal protein L34 [Chlamydophila pneumoniae TW-183]: R-rich region from 2 to 40 corrected with score 47
>CPNE-TW1-01-000966 	gi|33242302|ref|NP_877243.1| 30S ribosomal protein S14 [Chlamydophila pneumoniae TW-183]: K-rich region from 3 to 53 corrected with score 41
>CPNE-TW1-01-000995 	gi|33242331|ref|NP_877272.1| outer membrane protein 11 [Chlamydophila pneumoniae TW-183]: S-rich region from 103 to 911 corrected with score 82
>CPNE-TW1-01-001002 	gi|33242338|ref|NP_877279.1| putative transport permease [Chlamydophila pneumoniae TW-183]: I-rich region from 141 to 181 corrected with score 42
>CPNE-TW1-01-001013 	gi|33242349|ref|NP_877290.1| putative zinc metalloproteinase [Chlamydophila pneumoniae TW-183]: E-rich region from 462 to 508 corrected with score 42
>CPNE-TW1-01-001023 	gi|33242359|ref|NP_877300.1| translation initiation factor IF-3 [Chlamydophila pneumoniae TW-183]: K-rich region from 37 to 83 corrected with score 41
>CPNE-TW1-01-001024 	gi|33242360|ref|NP_877301.1| 50S ribosomal protein L35 [Chlamydophila pneumoniae TW-183]: K-rich region from 3 to 47 corrected with score 44
>CPNE-TW1-01-001027 	gi|33242363|ref|NP_877304.1| hypothetical protein CpB1033 [Chlamydophila pneumoniae TW-183]: E-rich region from 94 to 142 corrected with score 42
>CPNE-TW1-01-001037 	gi|33242373|ref|NP_877314.1| hypothetical protein CpB1042 [Chlamydophila pneumoniae TW-183]: Q-rich region from 68 to 149 corrected with score 58
>CPNE-TW1-01-001038 	gi|33242374|ref|NP_877315.1| hypothetical protein CpB1043 [Chlamydophila pneumoniae TW-183]: N-rich region from 96 to 147 corrected with score 41
>CPNE-TW1-01-001039 	gi|33242375|ref|NP_877316.1| hypothetical protein CpB1044 [Chlamydophila pneumoniae TW-183]: Q-rich region from 11 to 109 corrected with score 52
>CPNE-TW1-01-001041 	gi|33242377|ref|NP_877318.1| hypothetical protein CpB1047 [Chlamydophila pneumoniae TW-183]: E-rich region from 131 to 424 corrected with score 42
>CPNE-TW1-01-001052 	gi|33242388|ref|NP_877329.1| hypothetical protein CpB1057 [Chlamydophila pneumoniae TW-183]: S-rich region from 46 to 244 corrected with score 118
>CPNE-TW1-01-001052 	gi|33242388|ref|NP_877329.1| hypothetical protein CpB1057 [Chlamydophila pneumoniae TW-183]: Q-rich region from 114 to 240 corrected with score 74
>CPNE-TW1-01-001054 	gi|33242390|ref|NP_877331.1| hypothetical protein CpB1058 [Chlamydophila pneumoniae TW-183]: Q-rich region from 89 to 248 corrected with score 64
>CPNE-TW1-01-001056 	gi|33242392|ref|NP_877333.1| hypothetical protein CpB1061 [Chlamydophila pneumoniae TW-183]: Q-rich region from 99 to 264 corrected with score 118
>CPNE-TW1-01-001056 	gi|33242392|ref|NP_877333.1| hypothetical protein CpB1061 [Chlamydophila pneumoniae TW-183]: S-rich region from 103 to 228 corrected with score 71
>CPNE-TW1-01-001056 	gi|33242392|ref|NP_877333.1| hypothetical protein CpB1061 [Chlamydophila pneumoniae TW-183]: K-rich region from 217 to 264 corrected with score 47
>CPNE-TW1-01-001057 	gi|33242393|ref|NP_877334.1| hypothetical protein CpB1062 [Chlamydophila pneumoniae TW-183]: Y-rich region from 56 to 74 corrected with score 52
>CPNE-TW1-01-001061 	gi|33242397|ref|NP_877338.1| hypothetical protein CpB1066 [Chlamydophila pneumoniae TW-183]: I-rich region from 33 to 92 corrected with score 44
>CPNE-TW1-01-001092 	gi|33242428|ref|NP_877369.1| hypothetical protein CpB1098 [Chlamydophila pneumoniae TW-183]: K-rich region from 155 to 225 corrected with score 49
>CPNE-TW1-01-001110 	gi|33242446|ref|NP_877387.1| hypothetical protein CpB1116 [Chlamydophila pneumoniae TW-183]: D-rich region from 441 to 454 corrected with score 43
>CPRO-UWE-01-000017 	gi|46445652|ref|YP_007017.1| hypothetical protein pc0018 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 11 to 521 corrected with score 232
>CPRO-UWE-01-000027 	gi|46445662|ref|YP_007027.1| hypothetical protein pc0028 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 53 to 66 corrected with score 44
>CPRO-UWE-01-000029 	gi|46445664|ref|YP_007029.1| 60 kDa chaperonin (GroEL) [Candidatus Protochlamydia amoebophila UWE25]: G-rich region from 532 to 555 corrected with score 51
>CPRO-UWE-01-000037 	gi|46445672|ref|YP_007037.1| hypothetical protein pc0038 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 416 to 511 corrected with score 47
>CPRO-UWE-01-000042 	gi|46445677|ref|YP_007042.1| hypothetical protein pc0043 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 315 to 435 corrected with score 101
>CPRO-UWE-01-000048 	gi|46445683|ref|YP_007048.1| hypothetical protein pc0049 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 126 to 178 corrected with score 41
>CPRO-UWE-01-000055 	gi|46445690|ref|YP_007055.1| hypothetical protein pc0056 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 321 to 439 corrected with score 82
>CPRO-UWE-01-000066 	gi|46445701|ref|YP_007066.1| hypothetical protein pc0067 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 68 to 138 corrected with score 53
>CPRO-UWE-01-000070 	gi|46445705|ref|YP_007070.1| fused DNA topoisomerase I/SWI domain-containing protein [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 747 to 790 corrected with score 66
>CPRO-UWE-01-000083 	gi|46445718|ref|YP_007083.1| hypothetical protein pc0084 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 79 to 183 corrected with score 49
>CPRO-UWE-01-000100 	gi|46445735|ref|YP_007100.1| putative oligopeptide transport system permease protein, oppC [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 197 to 262 corrected with score 44
>CPRO-UWE-01-000106 	gi|46445741|ref|YP_007106.1| hypothetical protein pc0107 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 12 to 252 corrected with score 101
>CPRO-UWE-01-000113 	gi|46445748|ref|YP_007113.1| putative batE protein [Candidatus Protochlamydia amoebophila UWE25]: F-rich region from 136 to 155 corrected with score 42
>CPRO-UWE-01-000116 	gi|46445751|ref|YP_007116.1| hypothetical protein pc0117 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 362 to 557 corrected with score 41
>CPRO-UWE-01-000131 	gi|46445766|ref|YP_007131.1| 30S ribosomal protein S20 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 3 to 95 corrected with score 48
>CPRO-UWE-01-000135 	gi|46445770|ref|YP_007135.1| 30S ribosomal protein S2 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 239 to 272 corrected with score 45
>CPRO-UWE-01-000137 	gi|46445772|ref|YP_007137.1| hypothetical protein pc0138 [Candidatus Protochlamydia amoebophila UWE25]: G-rich region from 135 to 217 corrected with score 73
>CPRO-UWE-01-000145 	gi|46445780|ref|YP_007145.1| preprotein translocase subunit SecA [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 962 to 988 corrected with score 47
>CPRO-UWE-01-000149 	gi|46445784|ref|YP_007149.1| hypothetical protein pc0150 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 35 to 79 corrected with score 48
>CPRO-UWE-01-000155 	gi|46445790|ref|YP_007155.1| hypothetical protein pc0156 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 181 to 224 corrected with score 45
>CPRO-UWE-01-000173 	gi|46445808|ref|YP_007173.1| excinuclease ABC subunit B [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 600 to 669 corrected with score 44
>CPRO-UWE-01-000177 	gi|46445812|ref|YP_007177.1| hypothetical protein pc0178 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 242 to 270 corrected with score 41
>CPRO-UWE-01-000179 	gi|46445814|ref|YP_007179.1| hypothetical protein pc0180 [Candidatus Protochlamydia amoebophila UWE25]: F-rich region from 187 to 249 corrected with score 42
>CPRO-UWE-01-000181 	gi|46445816|ref|YP_007181.1| ABC transporter [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 121 to 178 corrected with score 45
>CPRO-UWE-01-000183 	gi|46445818|ref|YP_007183.1| hypothetical protein pc0184 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 133 to 212 corrected with score 80
>CPRO-UWE-01-000184 	gi|46445819|ref|YP_007184.1| hypothetical protein pc0185 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 14 to 84 corrected with score 45
>CPRO-UWE-01-000184 	gi|46445819|ref|YP_007184.1| hypothetical protein pc0185 [Candidatus Protochlamydia amoebophila UWE25]: F-rich region from 91 to 144 corrected with score 41
>CPRO-UWE-01-000201 	gi|46445836|ref|YP_007201.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25]: T-rich region from 28 to 63 corrected with score 64
>CPRO-UWE-01-000201 	gi|46445836|ref|YP_007201.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 105 to 142 corrected with score 46
>CPRO-UWE-01-000202 	gi|46445837|ref|YP_007202.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 39 to 95 corrected with score 43
>CPRO-UWE-01-000218 	gi|46445853|ref|YP_007218.1| GTPase ObgE [Candidatus Protochlamydia amoebophila UWE25]: G-rich region from 31 to 43 corrected with score 44
>CPRO-UWE-01-000258 	gi|46445893|ref|YP_007258.1| putative ABC transporter permease ytgD [Candidatus Protochlamydia amoebophila UWE25]: I-rich region from 178 to 314 corrected with score 42
>CPRO-UWE-01-000263 	gi|46445898|ref|YP_007263.1| hypothetical protein pc0264 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 1343 to 1789 corrected with score 98
>CPRO-UWE-01-000309 	gi|46445944|ref|YP_007309.1| hypothetical protein pc0310 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 96 to 120 corrected with score 53
>CPRO-UWE-01-000321 	gi|46445956|ref|YP_007321.1| GTP-binding protein LepA [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 565 to 586 corrected with score 41
>CPRO-UWE-01-000333 	gi|46445968|ref|YP_007333.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 74 to 163 corrected with score 40
>CPRO-UWE-01-000347 	gi|46445982|ref|YP_007347.1| hypothetical protein pc0348 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 162 to 284 corrected with score 68
>CPRO-UWE-01-000347 	gi|46445982|ref|YP_007347.1| hypothetical protein pc0348 [Candidatus Protochlamydia amoebophila UWE25]: G-rich region from 593 to 608 corrected with score 42
>CPRO-UWE-01-000349 	gi|46445984|ref|YP_007349.1| DNA topoisomerase IV subunit B [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 352 to 384 corrected with score 43
>CPRO-UWE-01-000365 	gi|46446000|ref|YP_007365.1| nucleoside-diphosphate kinase [Candidatus Protochlamydia amoebophila UWE25]: D-rich region from 36 to 61 corrected with score 74
>CPRO-UWE-01-000377 	gi|46446012|ref|YP_007377.1| hypothetical protein pc0378 [Candidatus Protochlamydia amoebophila UWE25]: C-rich region from 260 to 287 corrected with score 42
>CPRO-UWE-01-000380 	gi|46446015|ref|YP_007380.1| putative glutathione-regulated potassium-efflux system protein [Candidatus Protochlamydia amoebophila UWE25]: V-rich region from 111 to 349 corrected with score 62
>CPRO-UWE-01-000385 	gi|46446020|ref|YP_007385.1| hypothetical protein pc0386 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 96 to 192 corrected with score 55
>CPRO-UWE-01-000389 	gi|46446024|ref|YP_007389.1| hypothetical protein pc0390 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 314 to 444 corrected with score 48
>CPRO-UWE-01-000398 	gi|46446033|ref|YP_007398.1| putative eucaryotic myosin heavy chain [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 119 to 503 corrected with score 169
>CPRO-UWE-01-000398 	gi|46446033|ref|YP_007398.1| putative eucaryotic myosin heavy chain [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 304 to 540 corrected with score 42
>CPRO-UWE-01-000398 	gi|46446033|ref|YP_007398.1| putative eucaryotic myosin heavy chain [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 681 to 730 corrected with score 42
>CPRO-UWE-01-000432 	gi|46446067|ref|YP_007432.1| DNA-directed RNA polymerase subunit alpha [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 348 to 371 corrected with score 44
>CPRO-UWE-01-000436 	gi|46446071|ref|YP_007436.1| hypothetical protein pc0437 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 101 to 375 corrected with score 117
>CPRO-UWE-01-000440 	gi|46446075|ref|YP_007440.1| hypothetical protein pc0441 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 324 to 388 corrected with score 84
>CPRO-UWE-01-000440 	gi|46446075|ref|YP_007440.1| hypothetical protein pc0441 [Candidatus Protochlamydia amoebophila UWE25]: D-rich region from 307 to 321 corrected with score 62
>CPRO-UWE-01-000445 	gi|46446080|ref|YP_007445.1| hypothetical protein pc0446 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 25 to 174 corrected with score 55
>CPRO-UWE-01-000451 	gi|46446086|ref|YP_007451.1| hypothetical protein pc0452 [Candidatus Protochlamydia amoebophila UWE25]: F-rich region from 21 to 40 corrected with score 49
>CPRO-UWE-01-000455 	gi|46446090|ref|YP_007455.1| hypothetical protein pc0456 [Candidatus Protochlamydia amoebophila UWE25]: P-rich region from 202 to 218 corrected with score 76
>CPRO-UWE-01-000455 	gi|46446090|ref|YP_007455.1| hypothetical protein pc0456 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 118 to 175 corrected with score 42
>CPRO-UWE-01-000461 	gi|46446096|ref|YP_007461.1| putative endopeptidase (ATP-dependent serine protease) La [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 581 to 613 corrected with score 44
>CPRO-UWE-01-000466 	gi|46446101|ref|YP_007466.1| 30S ribosomal protein S21 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 14 to 59 corrected with score 48
>CPRO-UWE-01-000467 	gi|46446102|ref|YP_007467.1| heat shock protein dnaJ [Candidatus Protochlamydia amoebophila UWE25]: G-rich region from 74 to 131 corrected with score 64
>CPRO-UWE-01-000469 	gi|46446104|ref|YP_007469.1| putative multifunctional cell division protein ftsK [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 232 to 368 corrected with score 49
>CPRO-UWE-01-000471 	gi|46446106|ref|YP_007471.1| hypothetical protein pc0472 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 380 to 444 corrected with score 43
>CPRO-UWE-01-000477 	gi|46446112|ref|YP_007477.1| DNA polymerase III subunits gamma and tau [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 384 to 487 corrected with score 48
>CPRO-UWE-01-000478 	gi|46446113|ref|YP_007478.1| hypothetical protein pc0479 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 67 to 118 corrected with score 40
>CPRO-UWE-01-000490 	gi|46446125|ref|YP_007490.1| hypothetical protein pc0491 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 26 to 88 corrected with score 64
>CPRO-UWE-01-000521 	gi|46446156|ref|YP_007521.1| hypothetical protein pc0522 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 45 to 74 corrected with score 43
>CPRO-UWE-01-000547 	gi|46446182|ref|YP_007547.1| putative peptide chain release factor 2 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 58 to 116 corrected with score 46
>CPRO-UWE-01-000550 	gi|46446185|ref|YP_007550.1| multidrug ABC transporter [Candidatus Protochlamydia amoebophila UWE25]: V-rich region from 342 to 499 corrected with score 52
>CPRO-UWE-01-000567 	gi|46446202|ref|YP_007567.1| putative NADH-ubiquinone oxidoreductase chain J [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 15 to 79 corrected with score 44
>CPRO-UWE-01-000592 	gi|46446227|ref|YP_007592.1| hypothetical protein pc0593 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 184 to 329 corrected with score 62
>CPRO-UWE-01-000602 	gi|46446237|ref|YP_007602.1| 50S ribosomal protein L7/L12 [Candidatus Protochlamydia amoebophila UWE25]: A-rich region from 36 to 69 corrected with score 45
>CPRO-UWE-01-000615 	gi|46446250|ref|YP_007615.1| putative 60 kDa cysteine-rich outer membrane protein [Candidatus Protochlamydia amoebophila UWE25]: C-rich region from 295 to 333 corrected with score 41
>CPRO-UWE-01-000626 	gi|46446261|ref|YP_007626.1| hypothetical protein pc0627 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 51 to 114 corrected with score 49
>CPRO-UWE-01-000632 	gi|46446267|ref|YP_007632.1| putative acriflavin resistance protein D [Candidatus Protochlamydia amoebophila UWE25]: I-rich region from 853 to 932 corrected with score 46
>CPRO-UWE-01-000637 	gi|46446272|ref|YP_007637.1| hypothetical protein pc0638 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 91 to 109 corrected with score 41
>CPRO-UWE-01-000639 	gi|46446274|ref|YP_007639.1| cell division protein FtsH [Candidatus Protochlamydia amoebophila UWE25]: P-rich region from 892 to 897 corrected with score 42
>CPRO-UWE-01-000645 	gi|46446280|ref|YP_007645.1| hypothetical protein pc0646 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 40 to 122 corrected with score 41
>CPRO-UWE-01-000646 	gi|46446281|ref|YP_007646.1| hypothetical protein pc0647 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 149 to 226 corrected with score 45
>CPRO-UWE-01-000650 	gi|46446285|ref|YP_007650.1| 50S ribosomal protein L31 type B [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 60 to 117 corrected with score 47
>CPRO-UWE-01-000651 	gi|46446286|ref|YP_007651.1| peptide chain release factor 1 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 258 to 297 corrected with score 45
>CPRO-UWE-01-000673 	gi|46446308|ref|YP_007673.1| hypothetical protein pc0674 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 154 to 277 corrected with score 46
>CPRO-UWE-01-000674 	gi|46446309|ref|YP_007674.1| hypothetical protein pc0675 [Candidatus Protochlamydia amoebophila UWE25]: H-rich region from 295 to 305 corrected with score 44
>CPRO-UWE-01-000695 	gi|46446330|ref|YP_007695.1| hypothetical protein pc0696 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 90 to 129 corrected with score 40
>CPRO-UWE-01-000727 	gi|46446362|ref|YP_007727.1| endopeptidase Clp ATP-binding chain [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 425 to 535 corrected with score 68
>CPRO-UWE-01-000746 	gi|46446381|ref|YP_007746.1| hypothetical protein pc0747 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 89 to 116 corrected with score 49
>CPRO-UWE-01-000747 	gi|46446382|ref|YP_007747.1| hypothetical protein pc0748 [Candidatus Protochlamydia amoebophila UWE25]: A-rich region from 9 to 74 corrected with score 49
>CPRO-UWE-01-000747 	gi|46446382|ref|YP_007747.1| hypothetical protein pc0748 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 24 to 100 corrected with score 44
>CPRO-UWE-01-000748 	gi|46446383|ref|YP_007748.1| type III secretion pathway protein SctV [Candidatus Protochlamydia amoebophila UWE25]: I-rich region from 30 to 91 corrected with score 45
>CPRO-UWE-01-000749 	gi|46446384|ref|YP_007749.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25]: V-rich region from 71 to 201 corrected with score 41
>CPRO-UWE-01-000760 	gi|46446395|ref|YP_007760.1| translation initiation factor IF-2 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 24 to 319 corrected with score 115
>CPRO-UWE-01-000760 	gi|46446395|ref|YP_007760.1| translation initiation factor IF-2 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 31 to 142 corrected with score 54
>CPRO-UWE-01-000763 	gi|46446398|ref|YP_007763.1| 30S ribosomal protein S1 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 564 to 587 corrected with score 44
>CPRO-UWE-01-000778 	gi|46446413|ref|YP_007778.1| hypothetical protein pc0779 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 158 to 608 corrected with score 210
>CPRO-UWE-01-000785 	gi|46446420|ref|YP_007785.1| hypothetical protein pc0786 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 90 to 105 corrected with score 40
>CPRO-UWE-01-000789 	gi|46446424|ref|YP_007789.1| hypothetical protein pc0790 [Candidatus Protochlamydia amoebophila UWE25]: T-rich region from 59 to 242 corrected with score 103
>CPRO-UWE-01-000804 	gi|46446439|ref|YP_007804.1| hypothetical protein pc0805 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 529 to 573 corrected with score 65
>CPRO-UWE-01-000804 	gi|46446439|ref|YP_007804.1| hypothetical protein pc0805 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 12 to 171 corrected with score 63
>CPRO-UWE-01-000815 	gi|46446450|ref|YP_007815.1| hypothetical protein pc0816 [Candidatus Protochlamydia amoebophila UWE25]: I-rich region from 567 to 591 corrected with score 43
>CPRO-UWE-01-000815 	gi|46446450|ref|YP_007815.1| hypothetical protein pc0816 [Candidatus Protochlamydia amoebophila UWE25]: I-rich region from 18 to 44 corrected with score 42
>CPRO-UWE-01-000840 	gi|46446475|ref|YP_007840.1| hypothetical protein pc0841 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 4 to 67 corrected with score 45
>CPRO-UWE-01-000865 	gi|46446500|ref|YP_007865.1| hypothetical protein pc0866 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 26 to 57 corrected with score 50
>CPRO-UWE-01-000875 	gi|46446510|ref|YP_007875.1| hypothetical protein pc0876 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 34 to 56 corrected with score 45
>CPRO-UWE-01-000877 	gi|46446512|ref|YP_007877.1| L-serine ammonia-lyase [Candidatus Protochlamydia amoebophila UWE25]: A-rich region from 326 to 377 corrected with score 41
>CPRO-UWE-01-000896 	gi|46446531|ref|YP_007896.1| hypothetical protein pc0897 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 1 to 50 corrected with score 41
>CPRO-UWE-01-000898 	gi|46446533|ref|YP_007898.1| hypothetical protein pc0899 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 113 to 452 corrected with score 86
>CPRO-UWE-01-000904 	gi|46446539|ref|YP_007904.1| hypothetical protein pc0905 [Candidatus Protochlamydia amoebophila UWE25]: P-rich region from 215 to 233 corrected with score 67
>CPRO-UWE-01-000904 	gi|46446539|ref|YP_007904.1| hypothetical protein pc0905 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 128 to 312 corrected with score 49
>CPRO-UWE-01-000937 	gi|46446572|ref|YP_007937.1| hypothetical protein pc0938 [Candidatus Protochlamydia amoebophila UWE25]: T-rich region from 436 to 3078 corrected with score 923
>CPRO-UWE-01-000937 	gi|46446572|ref|YP_007937.1| hypothetical protein pc0938 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 2677 to 2791 corrected with score 43
>CPRO-UWE-01-000945 	gi|46446580|ref|YP_007945.1| hypothetical protein pc0946 [Candidatus Protochlamydia amoebophila UWE25]: Y-rich region from 68 to 154 corrected with score 50
>CPRO-UWE-01-000953 	gi|46446588|ref|YP_007953.1| hypothetical protein pc0954 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 3 to 118 corrected with score 48
>CPRO-UWE-01-000962 	gi|46446597|ref|YP_007962.1| hypothetical protein pc0963 [Candidatus Protochlamydia amoebophila UWE25]: Y-rich region from 32 to 81 corrected with score 116
>CPRO-UWE-01-000962 	gi|46446597|ref|YP_007962.1| hypothetical protein pc0963 [Candidatus Protochlamydia amoebophila UWE25]: H-rich region from 27 to 54 corrected with score 73
>CPRO-UWE-01-000964 	gi|46446599|ref|YP_007964.1| hypothetical protein pc0965 [Candidatus Protochlamydia amoebophila UWE25]: F-rich region from 4 to 73 corrected with score 86
>CPRO-UWE-01-000965 	gi|46446600|ref|YP_007965.1| hypothetical protein pc0966 [Candidatus Protochlamydia amoebophila UWE25]: F-rich region from 14 to 72 corrected with score 54
>CPRO-UWE-01-000977 	gi|46446612|ref|YP_007977.1| hypothetical protein pc0978 [Candidatus Protochlamydia amoebophila UWE25]: C-rich region from 24 to 51 corrected with score 56
>CPRO-UWE-01-000977 	gi|46446612|ref|YP_007977.1| hypothetical protein pc0978 [Candidatus Protochlamydia amoebophila UWE25]: H-rich region from 11 to 22 corrected with score 54
>CPRO-UWE-01-000977 	gi|46446612|ref|YP_007977.1| hypothetical protein pc0978 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 2 to 49 corrected with score 40
>CPRO-UWE-01-000987 	gi|46446622|ref|YP_007987.1| hypothetical protein pc0988 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 16 to 81 corrected with score 43
>CPRO-UWE-01-000992 	gi|46446627|ref|YP_007992.1| hypothetical protein pc0993 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 4 to 80 corrected with score 42
>CPRO-UWE-01-001005 	gi|46446640|ref|YP_008005.1| hypothetical protein pc1006 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 2 to 83 corrected with score 58
>CPRO-UWE-01-001005 	gi|46446640|ref|YP_008005.1| hypothetical protein pc1006 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 510 to 551 corrected with score 43
>CPRO-UWE-01-001008 	gi|46446643|ref|YP_008008.1| hypothetical protein pc1009 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 23 to 113 corrected with score 50
>CPRO-UWE-01-001010 	gi|46446645|ref|YP_008010.1| hypothetical protein pc1011 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 510 to 646 corrected with score 51
>CPRO-UWE-01-001047 	gi|46446682|ref|YP_008047.1| putative ribonuclease R [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 729 to 775 corrected with score 63
>CPRO-UWE-01-001055 	gi|46446690|ref|YP_008055.1| hypothetical protein pc1056 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 47 to 187 corrected with score 84
>CPRO-UWE-01-001056 	gi|46446691|ref|YP_008056.1| hypothetical protein pc1057 [Candidatus Protochlamydia amoebophila UWE25]: D-rich region from 648 to 665 corrected with score 47
>CPRO-UWE-01-001070 	gi|46446705|ref|YP_008070.1| hypothetical protein pc1071 [Candidatus Protochlamydia amoebophila UWE25]: T-rich region from 317 to 376 corrected with score 51
>CPRO-UWE-01-001076 	gi|46446711|ref|YP_008076.1| hypothetical protein pc1077 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 174 to 208 corrected with score 62
>CPRO-UWE-01-001080 	gi|46446715|ref|YP_008080.1| putative inner membrane protein translocase component YidC [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 53 to 81 corrected with score 51
>CPRO-UWE-01-001084 	gi|46446719|ref|YP_008084.1| hypothetical protein pc1085 [Candidatus Protochlamydia amoebophila UWE25]: H-rich region from 8 to 21 corrected with score 50
>CPRO-UWE-01-001085 	gi|46446720|ref|YP_008085.1| hypothetical protein pc1086 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 55 to 270 corrected with score 110
>CPRO-UWE-01-001085 	gi|46446720|ref|YP_008085.1| hypothetical protein pc1086 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 159 to 277 corrected with score 45
>CPRO-UWE-01-001086 	gi|46446721|ref|YP_008086.1| hypothetical protein pc1087 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 58 to 312 corrected with score 84
>CPRO-UWE-01-001088 	gi|46446723|ref|YP_008088.1| dihydrolipoamide S-succinyltransferase, (2-oxogluturate dehydrogenase complex E2 component), sucB [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 93 to 178 corrected with score 46
>CPRO-UWE-01-001093 	gi|46446728|ref|YP_008093.1| hypothetical protein pc1094 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 156 to 202 corrected with score 44
>CPRO-UWE-01-001094 	gi|46446729|ref|YP_008094.1| hypothetical protein pc1095 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 30 to 134 corrected with score 61
>CPRO-UWE-01-001105 	gi|46446740|ref|YP_008105.1| isoamylase [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 446 to 479 corrected with score 42
>CPRO-UWE-01-001123 	gi|46446758|ref|YP_008123.1| putative calcium-dependent protein kinase 9 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 16 to 76 corrected with score 46
>CPRO-UWE-01-001126 	gi|46446761|ref|YP_008126.1| hypothetical protein pc1127 [Candidatus Protochlamydia amoebophila UWE25]: F-rich region from 4 to 22 corrected with score 42
>CPRO-UWE-01-001171 	gi|46446806|ref|YP_008171.1| hypothetical protein pc1172 [Candidatus Protochlamydia amoebophila UWE25]: G-rich region from 92 to 154 corrected with score 45
>CPRO-UWE-01-001188 	gi|46446823|ref|YP_008188.1| cytochrome o ubiquinol oxidase chain II cyoA [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 8 to 75 corrected with score 43
>CPRO-UWE-01-001207 	gi|46446842|ref|YP_008207.1| hypothetical protein pc1208 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 654 to 761 corrected with score 49
>CPRO-UWE-01-001207 	gi|46446842|ref|YP_008207.1| hypothetical protein pc1208 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 88 to 197 corrected with score 49
>CPRO-UWE-01-001217 	gi|46446852|ref|YP_008217.1| hypothetical protein pc1218 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 92 to 191 corrected with score 42
>CPRO-UWE-01-001223 	gi|46446858|ref|YP_008223.1| hypothetical protein pc1224 [Candidatus Protochlamydia amoebophila UWE25]: P-rich region from 68 to 111 corrected with score 60
>CPRO-UWE-01-001241 	gi|46446876|ref|YP_008241.1| hypothetical protein pc1242 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 318 to 569 corrected with score 67
>CPRO-UWE-01-001241 	gi|46446876|ref|YP_008241.1| hypothetical protein pc1242 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 4 to 76 corrected with score 64
>CPRO-UWE-01-001272 	gi|46446907|ref|YP_008272.1| hypothetical protein pc1273 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 50 to 329 corrected with score 90
>CPRO-UWE-01-001281 	gi|46446916|ref|YP_008281.1| hypothetical protein pc1282 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 364 to 628 corrected with score 61
>CPRO-UWE-01-001307 	gi|46446942|ref|YP_008307.1| putative Poly(A) polymerase [Candidatus Protochlamydia amoebophila UWE25]: H-rich region from 396 to 419 corrected with score 40
>CPRO-UWE-01-001320 	gi|46446955|ref|YP_008320.1| hypothetical protein pc1321 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 152 to 253 corrected with score 43
>CPRO-UWE-01-001340 	gi|46446975|ref|YP_008340.1| hypothetical protein pc1341 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 1535 to 1751 corrected with score 41
>CPRO-UWE-01-001342 	gi|46446977|ref|YP_008342.1| putative ADP/ATP translocase [Candidatus Protochlamydia amoebophila UWE25]: F-rich region from 71 to 113 corrected with score 50
>CPRO-UWE-01-001354 	gi|46446989|ref|YP_008354.1| hypothetical protein pc1355 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 668 to 788 corrected with score 66
>CPRO-UWE-01-001354 	gi|46446989|ref|YP_008354.1| hypothetical protein pc1355 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 30 to 125 corrected with score 59
>CPRO-UWE-01-001357 	gi|46446992|ref|YP_008357.1| hypothetical protein pc1358 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 81 to 133 corrected with score 55
>CPRO-UWE-01-001362 	gi|46446997|ref|YP_008362.1| hypothetical protein pc1363 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 123 to 182 corrected with score 47
>CPRO-UWE-01-001373 	gi|46447008|ref|YP_008373.1| hypothetical protein pc1374 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 103 to 144 corrected with score 44
>CPRO-UWE-01-001379 	gi|46447014|ref|YP_008379.1| hypothetical protein pc1380 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 141 to 257 corrected with score 92
>CPRO-UWE-01-001379 	gi|46447014|ref|YP_008379.1| hypothetical protein pc1380 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 467 to 717 corrected with score 54
>CPRO-UWE-01-001379 	gi|46447014|ref|YP_008379.1| hypothetical protein pc1380 [Candidatus Protochlamydia amoebophila UWE25]: A-rich region from 279 to 324 corrected with score 43
>CPRO-UWE-01-001384 	gi|46447019|ref|YP_008384.1| hypothetical protein pc1385 [Candidatus Protochlamydia amoebophila UWE25]: A-rich region from 396 to 612 corrected with score 105
>CPRO-UWE-01-001384 	gi|46447019|ref|YP_008384.1| hypothetical protein pc1385 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 344 to 383 corrected with score 46
>CPRO-UWE-01-001391 	gi|46447026|ref|YP_008391.1| hypothetical protein pc1392 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 5 to 56 corrected with score 50
>CPRO-UWE-01-001397 	gi|46447032|ref|YP_008397.1| hypothetical protein pc1398 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 9 to 140 corrected with score 101
>CPRO-UWE-01-001397 	gi|46447032|ref|YP_008397.1| hypothetical protein pc1398 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 13 to 151 corrected with score 44
>CPRO-UWE-01-001398 	gi|46447033|ref|YP_008398.1| hypothetical protein pc1399 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 41 to 175 corrected with score 50
>CPRO-UWE-01-001398 	gi|46447033|ref|YP_008398.1| hypothetical protein pc1399 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 312 to 330 corrected with score 45
>CPRO-UWE-01-001399 	gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 278 to 359 corrected with score 101
>CPRO-UWE-01-001399 	gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25]: D-rich region from 303 to 335 corrected with score 54
>CPRO-UWE-01-001419 	gi|46447054|ref|YP_008419.1| hypothetical protein pc1420 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 2 to 31 corrected with score 42
>CPRO-UWE-01-001424 	gi|46447059|ref|YP_008424.1| putative F pilus assembly protein traB [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 50 to 101 corrected with score 50
>CPRO-UWE-01-001427 	gi|46447062|ref|YP_008427.1| hypothetical protein pc1428 [Candidatus Protochlamydia amoebophila UWE25]: Y-rich region from 9 to 37 corrected with score 40
>CPRO-UWE-01-001434 	gi|46447069|ref|YP_008434.1| hypothetical protein pc1435 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 71 to 146 corrected with score 49
>CPRO-UWE-01-001437 	gi|46447072|ref|YP_008437.1| putative F pilus assembly protein traF [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 37 to 108 corrected with score 42
>CPRO-UWE-01-001439 	gi|46447074|ref|YP_008439.1| putative conjugative transfer protein traG [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 438 to 734 corrected with score 106
>CPRO-UWE-01-001439 	gi|46447074|ref|YP_008439.1| putative conjugative transfer protein traG [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 697 to 915 corrected with score 53
>CPRO-UWE-01-001454 	gi|46447089|ref|YP_008454.1| hypothetical protein pc1455 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 1383 to 1847 corrected with score 132
>CPRO-UWE-01-001458 	gi|46447093|ref|YP_008458.1| hypothetical protein pc1459 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 102 to 134 corrected with score 53
>CPRO-UWE-01-001461 	gi|46447096|ref|YP_008461.1| hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 120 to 152 corrected with score 43
>CPRO-UWE-01-001466 	gi|46447101|ref|YP_008466.1| hypothetical protein pc1467 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 11 to 68 corrected with score 45
>CPRO-UWE-01-001474 	gi|46447109|ref|YP_008474.1| putative component D of type II secretion pathway [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 2 to 220 corrected with score 57
>CPRO-UWE-01-001477 	gi|46447112|ref|YP_008477.1| putative sulfate transport protein [Candidatus Protochlamydia amoebophila UWE25]: Y-rich region from 234 to 255 corrected with score 42
>CPRO-UWE-01-001479 	gi|46447114|ref|YP_008479.1| hypothetical protein pc1480 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 449 to 487 corrected with score 44
>CPRO-UWE-01-001486 	gi|46447121|ref|YP_008486.1| putative chromosome segregation SMC protein [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 172 to 937 corrected with score 222
>CPRO-UWE-01-001486 	gi|46447121|ref|YP_008486.1| putative chromosome segregation SMC protein [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 210 to 485 corrected with score 60
>CPRO-UWE-01-001497 	gi|46447132|ref|YP_008497.1| heat shock protein GrpE [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 3 to 82 corrected with score 50
>CPRO-UWE-01-001498 	gi|46447133|ref|YP_008498.1| molecular chaperone DnaK [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 497 to 653 corrected with score 86
>CPRO-UWE-01-001507 	gi|46447142|ref|YP_008507.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 73 to 133 corrected with score 41
>CPRO-UWE-01-001510 	gi|46447145|ref|YP_008510.1| endopeptidase ATP-binding chain clpC [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 433 to 500 corrected with score 57
>CPRO-UWE-01-001523 	gi|46447158|ref|YP_008523.1| hypothetical protein pc1524 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 32 to 113 corrected with score 48
>CPRO-UWE-01-001539 	gi|46447174|ref|YP_008539.1| hypothetical protein pc1540 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 167 to 244 corrected with score 42
>CPRO-UWE-01-001544 	gi|46447179|ref|YP_008544.1| histone H1-like protein [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 22 to 128 corrected with score 82
>CPRO-UWE-01-001544 	gi|46447179|ref|YP_008544.1| histone H1-like protein [Candidatus Protochlamydia amoebophila UWE25]: A-rich region from 67 to 131 corrected with score 64
>CPRO-UWE-01-001553 	gi|46447188|ref|YP_008553.1| hypothetical protein pc1554 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 62 to 155 corrected with score 52
>CPRO-UWE-01-001554 	gi|46447189|ref|YP_008554.1| hypothetical protein pc1555 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 127 to 184 corrected with score 55
>CPRO-UWE-01-001571 	gi|46447206|ref|YP_008571.1| putative tylosin resistance protein [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 518 to 620 corrected with score 51
>CPRO-UWE-01-001571 	gi|46447206|ref|YP_008571.1| putative tylosin resistance protein [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 533 to 566 corrected with score 44
>CPRO-UWE-01-001573 	gi|46447208|ref|YP_008573.1| hypothetical protein pc1574 [Candidatus Protochlamydia amoebophila UWE25]: F-rich region from 6 to 24 corrected with score 41
>CPRO-UWE-01-001574 	gi|46447209|ref|YP_008574.1| hypothetical protein pc1575 [Candidatus Protochlamydia amoebophila UWE25]: D-rich region from 48 to 121 corrected with score 295
>CPRO-UWE-01-001579 	gi|46447214|ref|YP_008579.1| hypothetical protein pc1580 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 149 to 203 corrected with score 40
>CPRO-UWE-01-001601 	gi|46447236|ref|YP_008601.1| hypothetical protein pc1602 [Candidatus Protochlamydia amoebophila UWE25]: P-rich region from 75 to 94 corrected with score 48
>CPRO-UWE-01-001601 	gi|46447236|ref|YP_008601.1| hypothetical protein pc1602 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 252 to 304 corrected with score 41
>CPRO-UWE-01-001605 	gi|46447240|ref|YP_008605.1| 30S ribosomal protein S14 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 3 to 45 corrected with score 43
>CPRO-UWE-01-001617 	gi|46447252|ref|YP_008617.1| hypothetical protein pc1618 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 11 to 68 corrected with score 40
>CPRO-UWE-01-001626 	gi|46447261|ref|YP_008626.1| hypothetical protein pc1627 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 55 to 145 corrected with score 47
>CPRO-UWE-01-001626 	gi|46447261|ref|YP_008626.1| hypothetical protein pc1627 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 1 to 54 corrected with score 41
>CPRO-UWE-01-001642 	gi|46447277|ref|YP_008642.1| hypothetical protein pc1643 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 164 to 230 corrected with score 46
>CPRO-UWE-01-001664 	gi|46447299|ref|YP_008664.1| hypothetical protein pc1665 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 50 to 78 corrected with score 43
>CPRO-UWE-01-001671 	gi|46447306|ref|YP_008671.1| putative H>-transporting two-sector ATPase (chain b, atpF) [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 35 to 158 corrected with score 55
>CPRO-UWE-01-001681 	gi|229221136|ref|YP_008681.2| V-type ATP synthase subunit E [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 5 to 105 corrected with score 48
>CPRO-UWE-01-001683 	gi|46447318|ref|YP_008683.1| hypothetical protein pc1684 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 73 to 98 corrected with score 43
>CPRO-UWE-01-001685 	gi|46447320|ref|YP_008685.1| hypothetical protein pc1686 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 79 to 118 corrected with score 40
>CPRO-UWE-01-001693 	gi|46447328|ref|YP_008693.1| hypothetical protein pc1694 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 490 to 566 corrected with score 42
>CPRO-UWE-01-001715 	gi|46447350|ref|YP_008715.1| hypothetical protein pc1716 [Candidatus Protochlamydia amoebophila UWE25]: D-rich region from 523 to 591 corrected with score 61
>CPRO-UWE-01-001715 	gi|46447350|ref|YP_008715.1| hypothetical protein pc1716 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 42 to 166 corrected with score 61
>CPRO-UWE-01-001726 	gi|46447361|ref|YP_008726.1| hypothetical protein pc1727 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 42 to 106 corrected with score 50
>CPRO-UWE-01-001729 	gi|46447364|ref|YP_008729.1| hypothetical protein pc1730 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 68 to 160 corrected with score 41
>CPRO-UWE-01-001735 	gi|46447370|ref|YP_008735.1| hypothetical protein pc1736 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 51 to 107 corrected with score 45
>CPRO-UWE-01-001738 	gi|46447373|ref|YP_008738.1| hypothetical protein pc1739 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 542 to 605 corrected with score 46
>CPRO-UWE-01-001744 	gi|46447379|ref|YP_008744.1| hypothetical protein pc1745 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 5 to 117 corrected with score 53
>CPRO-UWE-01-001763 	gi|46447398|ref|YP_008763.1| hypothetical protein pc1764 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 5 to 195 corrected with score 53
>CPRO-UWE-01-001769 	gi|46447404|ref|YP_008769.1| hypothetical protein pc1770 [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 86 to 191 corrected with score 62
>CPRO-UWE-01-001806 	gi|46447441|ref|YP_008806.1| putative zinc ABC transporter membrane protein [Candidatus Protochlamydia amoebophila UWE25]: L-rich region from 236 to 294 corrected with score 63
>CPRO-UWE-01-001807 	gi|46447442|ref|YP_008807.1| hypothetical protein pc1808 [Candidatus Protochlamydia amoebophila UWE25]: H-rich region from 31 to 71 corrected with score 97
>CPRO-UWE-01-001807 	gi|46447442|ref|YP_008807.1| hypothetical protein pc1808 [Candidatus Protochlamydia amoebophila UWE25]: G-rich region from 29 to 88 corrected with score 56
>CPRO-UWE-01-001807 	gi|46447442|ref|YP_008807.1| hypothetical protein pc1808 [Candidatus Protochlamydia amoebophila UWE25]: Y-rich region from 67 to 100 corrected with score 62
>CPRO-UWE-01-001814 	gi|46447449|ref|YP_008814.1| putative fibronectin/fibrinogen binding protein [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 163 to 333 corrected with score 40
>CPRO-UWE-01-001820 	gi|46447455|ref|YP_008820.1| hypothetical protein pc1821 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 25 to 145 corrected with score 130
>CPRO-UWE-01-001820 	gi|46447455|ref|YP_008820.1| hypothetical protein pc1821 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 25 to 85 corrected with score 58
>CPRO-UWE-01-001835 	gi|46447470|ref|YP_008835.1| putative histone H1-like protein [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 6 to 202 corrected with score 150
>CPRO-UWE-01-001835 	gi|46447470|ref|YP_008835.1| putative histone H1-like protein [Candidatus Protochlamydia amoebophila UWE25]: A-rich region from 34 to 190 corrected with score 103
>CPRO-UWE-01-001835 	gi|46447470|ref|YP_008835.1| putative histone H1-like protein [Candidatus Protochlamydia amoebophila UWE25]: T-rich region from 56 to 196 corrected with score 64
>CPRO-UWE-01-001848 	gi|46447483|ref|YP_008848.1| putative tolA protein of Tol-Pal system [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 99 to 239 corrected with score 136
>CPRO-UWE-01-001859 	gi|46447494|ref|YP_008859.1| hypothetical protein pc1860 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 161 to 215 corrected with score 42
>CPRO-UWE-01-001861 	gi|46447496|ref|YP_008861.1| hypothetical protein pc1862 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 17 to 140 corrected with score 91
>CPRO-UWE-01-001862 	gi|46447497|ref|YP_008862.1| hypothetical protein pc1863 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 72 to 141 corrected with score 101
>CPRO-UWE-01-001862 	gi|46447497|ref|YP_008862.1| hypothetical protein pc1863 [Candidatus Protochlamydia amoebophila UWE25]: T-rich region from 19 to 144 corrected with score 54
>CPRO-UWE-01-001863 	gi|46447498|ref|YP_008863.1| hypothetical protein pc1864 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 53 to 155 corrected with score 97
>CPRO-UWE-01-001863 	gi|46447498|ref|YP_008863.1| hypothetical protein pc1864 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 35 to 187 corrected with score 42
>CPRO-UWE-01-001874 	gi|46447509|ref|YP_008874.1| hypothetical protein pc1875 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 147 to 192 corrected with score 47
>CPRO-UWE-01-001875 	gi|46447510|ref|YP_008875.1| putative ribosome recycling factor (ribosome releasing factor) [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 108 to 179 corrected with score 47
>CPRO-UWE-01-001897 	gi|46447532|ref|YP_008897.1| putative protein of the general secretion pathway [Candidatus Protochlamydia amoebophila UWE25]: P-rich region from 411 to 426 corrected with score 41
>CPRO-UWE-01-001899 	gi|46447534|ref|YP_008899.1| hypothetical protein pc1900 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 2 to 76 corrected with score 46
>CPRO-UWE-01-001901 	gi|46447536|ref|YP_008901.1| hypothetical protein pc1902 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 12 to 76 corrected with score 43
>CPRO-UWE-01-001908 	gi|46447543|ref|YP_008908.1| hypothetical protein pc1909 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 91 to 219 corrected with score 69
>CPRO-UWE-01-001909 	gi|46447544|ref|YP_008909.1| hypothetical protein pc1910 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 24 to 162 corrected with score 50
>CPRO-UWE-01-001934 	gi|46447569|ref|YP_008934.1| hypothetical protein pc1935 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 4 to 81 corrected with score 45
>CPRO-UWE-01-001936 	gi|46447571|ref|YP_008936.1| hypothetical protein pc1937 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 51 to 130 corrected with score 51
>CPRO-UWE-01-001943 	gi|46447578|ref|YP_008943.1| hypothetical protein pc1944 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 684 to 775 corrected with score 44
>CPRO-UWE-01-001943 	gi|46447578|ref|YP_008943.1| hypothetical protein pc1944 [Candidatus Protochlamydia amoebophila UWE25]: W-rich region from 578 to 583 corrected with score 41
>CPRO-UWE-01-001946 	gi|46447581|ref|YP_008946.1| hypothetical protein pc1947 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 652 to 768 corrected with score 60
>CPRO-UWE-01-001946 	gi|46447581|ref|YP_008946.1| hypothetical protein pc1947 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 29 to 145 corrected with score 55
>CPRO-UWE-01-001957 	gi|46447592|ref|YP_008957.1| putative metalloproteinase [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 181 to 322 corrected with score 73
>CPRO-UWE-01-001965 	gi|46447600|ref|YP_008965.1| hypothetical protein pc1966 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 1210 to 1258 corrected with score 53
>CPRO-UWE-01-001967 	gi|46447602|ref|YP_008967.1| hypothetical protein pc1968 [Candidatus Protochlamydia amoebophila UWE25]: S-rich region from 62 to 109 corrected with score 41
>CPRO-UWE-01-001971 	gi|46447606|ref|YP_008971.1| hypothetical protein pc1972 [Candidatus Protochlamydia amoebophila UWE25]: K-rich region from 589 to 646 corrected with score 55
>CPRO-UWE-01-001984 	gi|46447619|ref|YP_008984.1| hypothetical protein pc1985 [Candidatus Protochlamydia amoebophila UWE25]: P-rich region from 172 to 224 corrected with score 142
>CPRO-UWE-01-002016 	gi|46447651|ref|YP_009016.1| hypothetical protein pc2017 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 52 to 310 corrected with score 104
>CPRO-UWE-01-002016 	gi|46447651|ref|YP_009016.1| hypothetical protein pc2017 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 114 to 215 corrected with score 63
>CPRO-UWE-01-002021 	gi|46447656|ref|YP_009021.1| hypothetical protein pc2022 [Candidatus Protochlamydia amoebophila UWE25]: Q-rich region from 110 to 372 corrected with score 102
>CPRO-UWE-01-002021 	gi|46447656|ref|YP_009021.1| hypothetical protein pc2022 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 242 to 372 corrected with score 42
>CPRO-UWE-01-002022 	gi|46447657|ref|YP_009022.1| hypothetical protein pc2023 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 90 to 402 corrected with score 133
>CPRO-UWE-01-002022 	gi|46447657|ref|YP_009022.1| hypothetical protein pc2023 [Candidatus Protochlamydia amoebophila UWE25]: N-rich region from 56 to 104 corrected with score 45
>CPRO-UWE-01-002026 	gi|46447661|ref|YP_009026.1| hypothetical protein pc2027 [Candidatus Protochlamydia amoebophila UWE25]: E-rich region from 35 to 299 corrected with score 63
>CPSI-01D-01-000000 	gi|334693791|gb|AEG87009.1| hypothetical protein CPS0A_1095 [Chlamydophila psittaci 01DC11]: H-rich region from 274 to 279 corrected with score 40
>CPSI-01D-01-000008 	gi|334693783|gb|AEG87001.1| 30S ribosomal protein S20 [Chlamydophila psittaci 01DC11]: K-rich region from 4 to 45 corrected with score 44
>CPSI-01D-01-000009 	gi|334693782|gb|AEG87000.1| putative inner membrane protein [Chlamydophila psittaci 01DC11]: Q-rich region from 92 to 245 corrected with score 54
>CPSI-01D-01-000022 	gi|334693769|gb|AEG86987.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila psittaci 01DC11]: K-rich region from 743 to 783 corrected with score 60
>CPSI-01D-01-000022 	gi|334693769|gb|AEG86987.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila psittaci 01DC11]: T-rich region from 729 to 781 corrected with score 46
>CPSI-01D-01-000036 	gi|334693755|gb|AEG86973.1| putative exported TonB protein [Chlamydophila psittaci 01DC11]: K-rich region from 62 to 127 corrected with score 51
>CPSI-01D-01-000045 	gi|334693746|gb|AEG86964.1| putative membrane protein [Chlamydophila psittaci 01DC11]: V-rich region from 33 to 76 corrected with score 55
>CPSI-01D-01-000056 	gi|334693735|gb|AEG86953.1| outer protein D1 [Chlamydophila psittaci 01DC11]: A-rich region from 14 to 389 corrected with score 184
>CPSI-01D-01-000056 	gi|334693735|gb|AEG86953.1| outer protein D1 [Chlamydophila psittaci 01DC11]: S-rich region from 55 to 95 corrected with score 62
>CPSI-01D-01-000056 	gi|334693735|gb|AEG86953.1| outer protein D1 [Chlamydophila psittaci 01DC11]: Q-rich region from 376 to 433 corrected with score 56
>CPSI-01D-01-000057 	gi|334693734|gb|AEG86952.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: A-rich region from 51 to 361 corrected with score 149
>CPSI-01D-01-000058 	gi|334693733|gb|AEG86951.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: T-rich region from 8 to 34 corrected with score 41
>CPSI-01D-01-000059 	gi|334693732|gb|AEG86950.1| type III secretion chaperone low calcium response protein [Chlamydophila psittaci 01DC11]: K-rich region from 178 to 227 corrected with score 48
>CPSI-01D-01-000070 	gi|334693721|gb|AEG86939.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: L-rich region from 105 to 134 corrected with score 43
>CPSI-01D-01-000071 	gi|334693720|gb|AEG86938.1| putative type III secretion inner membrane protein [Chlamydophila psittaci 01DC11]: M-rich region from 165 to 257 corrected with score 47
>CPSI-01D-01-000073 	gi|334693718|gb|AEG86936.1| secretion and cellular translocation protein R [Chlamydophila psittaci 01DC11]: L-rich region from 92 to 120 corrected with score 43
>CPSI-01D-01-000073 	gi|334693718|gb|AEG86936.1| secretion and cellular translocation protein R [Chlamydophila psittaci 01DC11]: M-rich region from 248 to 302 corrected with score 42
>CPSI-01D-01-000076 	gi|334693715|gb|AEG86933.1| putative type III secretion system protein [Chlamydophila psittaci 01DC11]: E-rich region from 287 to 328 corrected with score 51
>CPSI-01D-01-000088 	gi|334693703|gb|AEG86921.1| ribosome-associated GTPase [Chlamydophila psittaci 01DC11]: E-rich region from 166 to 210 corrected with score 47
>CPSI-01D-01-000093 	gi|334693698|gb|AEG86916.1| SNF2 family helicase [Chlamydophila psittaci 01DC11]: E-rich region from 6 to 47 corrected with score 43
>CPSI-01D-01-000098 	gi|334693693|gb|AEG86911.1| outer membrane protein ompB [Chlamydophila psittaci 01DC11]: S-rich region from 12 to 140 corrected with score 40
>CPSI-01D-01-000119 	gi|334693672|gb|AEG86890.1| putative lipoprotein [Chlamydophila psittaci 01DC11]: K-rich region from 29 to 91 corrected with score 43
>CPSI-01D-01-000129 	gi|334693662|gb|AEG86880.1| histone H1-like protein HC1 [Chlamydophila psittaci 01DC11]: K-rich region from 4 to 123 corrected with score 110
>CPSI-01D-01-000129 	gi|334693662|gb|AEG86880.1| histone H1-like protein HC1 [Chlamydophila psittaci 01DC11]: A-rich region from 67 to 120 corrected with score 49
>CPSI-01D-01-000145 	gi|334693646|gb|AEG86864.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: P-rich region from 94 to 116 corrected with score 44
>CPSI-01D-01-000155 	gi|334693636|gb|AEG86854.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: Q-rich region from 379 to 552 corrected with score 42
>CPSI-01D-01-000174 	gi|334693617|gb|AEG86835.1| 30S ribosomal protein S14 [Chlamydophila psittaci 01DC11]: K-rich region from 3 to 53 corrected with score 48
>CPSI-01D-01-000176 	gi|334693615|gb|AEG86833.1| excinuclease ABC subunit C [Chlamydophila psittaci 01DC11]: S-rich region from 591 to 627 corrected with score 68
>CPSI-01D-01-000200 	gi|334693591|gb|AEG86809.1| polymorphic outer membrane protein D family [Chlamydophila psittaci 01DC11]: S-rich region from 177 to 862 corrected with score 104
>CPSI-01D-01-000203 	gi|334693588|gb|AEG86806.1| conserved membrane protein [Chlamydophila psittaci 01DC11]: L-rich region from 59 to 93 corrected with score 41
>CPSI-01D-01-000204 	gi|334693587|gb|AEG86805.1| putative TMH-family membrane protein [Chlamydophila psittaci 01DC11]: V-rich region from 27 to 76 corrected with score 41
>CPSI-01D-01-000205 	gi|334693586|gb|AEG86804.1| putative incA family protein [Chlamydophila psittaci 01DC11]: Q-rich region from 85 to 290 corrected with score 99
>CPSI-01D-01-000206 	gi|334693585|gb|AEG86803.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 92 to 763 corrected with score 137
>CPSI-01D-01-000208 	gi|334693583|gb|AEG86801.1| putative TMH-family membrane protein [Chlamydophila psittaci 01DC11]: Q-rich region from 147 to 421 corrected with score 44
>CPSI-01D-01-000209 	gi|334693582|gb|AEG86800.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 86 to 234 corrected with score 77
>CPSI-01D-01-000209 	gi|334693582|gb|AEG86800.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: I-rich region from 28 to 75 corrected with score 49
>CPSI-01D-01-000210 	gi|334693581|gb|AEG86799.1| putative TMH-family membrane protein [Chlamydophila psittaci 01DC11]: Q-rich region from 105 to 289 corrected with score 73
>CPSI-01D-01-000210 	gi|334693581|gb|AEG86799.1| putative TMH-family membrane protein [Chlamydophila psittaci 01DC11]: I-rich region from 27 to 78 corrected with score 51
>CPSI-01D-01-000211 	gi|334693580|gb|AEG86798.1| putative TMH-family membrane protein [Chlamydophila psittaci 01DC11]: I-rich region from 27 to 74 corrected with score 46
>CPSI-01D-01-000233 	gi|334693558|gb|AEG86776.1| 50S ribosomal protein L35 [Chlamydophila psittaci 01DC11]: K-rich region from 3 to 47 corrected with score 43
>CPSI-01D-01-000236 	gi|334693555|gb|AEG86773.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 126 to 175 corrected with score 66
>CPSI-01D-01-000246 	gi|334693545|gb|AEG86763.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: Q-rich region from 87 to 138 corrected with score 52
>CPSI-01D-01-000248 	gi|334693543|gb|AEG86761.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: Q-rich region from 49 to 125 corrected with score 47
>CPSI-01D-01-000250 	gi|334693541|gb|AEG86759.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 130 to 416 corrected with score 48
>CPSI-01D-01-000262 	gi|334693529|gb|AEG86747.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 2 to 223 corrected with score 103
>CPSI-01D-01-000262 	gi|334693529|gb|AEG86747.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 232 to 277 corrected with score 56
>CPSI-01D-01-000263 	gi|334693528|gb|AEG86746.1| conserved membrane protein [Chlamydophila psittaci 01DC11]: S-rich region from 21 to 243 corrected with score 48
>CPSI-01D-01-000265 	gi|334693526|gb|AEG86744.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: Q-rich region from 111 to 314 corrected with score 111
>CPSI-01D-01-000265 	gi|334693526|gb|AEG86744.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 7 to 235 corrected with score 79
>CPSI-01D-01-000266 	gi|334693525|gb|AEG86743.1| lipoprotein [Chlamydophila psittaci 01DC11]: Y-rich region from 52 to 71 corrected with score 50
>CPSI-01D-01-000271 	gi|334693520|gb|AEG86738.1| putative transmembrane protein [Chlamydophila psittaci 01DC11]: L-rich region from 100 to 170 corrected with score 42
>CPSI-01D-01-000297 	gi|334693494|gb|AEG86712.1| putative transmembrane protein [Chlamydophila psittaci 01DC11]: I-rich region from 29 to 77 corrected with score 47
>CPSI-01D-01-000298 	gi|334693493|gb|AEG86711.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: P-rich region from 418 to 492 corrected with score 42
>CPSI-01D-01-000309 	gi|334693482|gb|AEG86700.1| 50S ribosomal protein L7/L12 [Chlamydophila psittaci 01DC11]: A-rich region from 34 to 71 corrected with score 49
>CPSI-01D-01-000314 	gi|334693477|gb|AEG86695.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 12 to 81 corrected with score 52
>CPSI-01D-01-000339 	gi|334693452|gb|AEG86670.1| signal peptidase I [Chlamydophila psittaci 01DC11]: Q-rich region from 22 to 64 corrected with score 41
>CPSI-01D-01-000355 	gi|334693436|gb|AEG86654.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: V-rich region from 34 to 79 corrected with score 40
>CPSI-01D-01-000372 	gi|334693419|gb|AEG86637.1| chaperone protease clpB [Chlamydophila psittaci 01DC11]: E-rich region from 412 to 534 corrected with score 68
>CPSI-01D-01-000378 	gi|334693413|gb|AEG86631.1| putative serine/threonine protein kinase [Chlamydophila psittaci 01DC11]: E-rich region from 284 to 378 corrected with score 46
>CPSI-01D-01-000380 	gi|334693411|gb|AEG86629.1| putative transmembrane protein [Chlamydophila psittaci 01DC11]: I-rich region from 69 to 103 corrected with score 45
>CPSI-01D-01-000380 	gi|334693411|gb|AEG86629.1| putative transmembrane protein [Chlamydophila psittaci 01DC11]: Q-rich region from 1033 to 1102 corrected with score 40
>CPSI-01D-01-000403 	gi|334693388|gb|AEG86606.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 185 to 223 corrected with score 52
>CPSI-01D-01-000403 	gi|334693388|gb|AEG86606.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: L-rich region from 44 to 100 corrected with score 51
>CPSI-01D-01-000415 	gi|334693376|gb|AEG86594.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: I-rich region from 1 to 53 corrected with score 41
>CPSI-01D-01-000421 	gi|334693370|gb|AEG86588.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 530 to 563 corrected with score 44
>CPSI-01D-01-000423 	gi|334693368|gb|AEG86586.1| adherence factor [Chlamydophila psittaci 01DC11]: S-rich region from 8 to 192 corrected with score 74
>CPSI-01D-01-000423 	gi|334693368|gb|AEG86586.1| adherence factor [Chlamydophila psittaci 01DC11]: A-rich region from 1941 to 2047 corrected with score 62
>CPSI-01D-01-000424 	gi|334693367|gb|AEG86585.1| adherence factor [Chlamydophila psittaci 01DC11]: I-rich region from 62 to 100 corrected with score 40
>CPSI-01D-01-000435 	gi|334693356|gb|AEG86574.1| inclusion membrane protein A [Chlamydophila psittaci 01DC11]: V-rich region from 46 to 117 corrected with score 60
>CPSI-01D-01-000447 	gi|334693344|gb|AEG86562.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: A-rich region from 132 to 208 corrected with score 56
>CPSI-01D-01-000452 	gi|334693339|gb|AEG86557.1| 30S ribosomal protein S9 [Chlamydophila psittaci 01DC11]: K-rich region from 92 to 133 corrected with score 46
>CPSI-01D-01-000456 	gi|334693335|gb|AEG86553.1| ABC transporter, permease protein [Chlamydophila psittaci 01DC11]: I-rich region from 360 to 385 corrected with score 40
>CPSI-01D-01-000459 	gi|334693332|gb|AEG86550.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: N-rich region from 41 to 89 corrected with score 41
>CPSI-01D-01-000469 	gi|334693322|gb|AEG86540.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 222 to 368 corrected with score 45
>CPSI-01D-01-000469 	gi|334693322|gb|AEG86540.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: V-rich region from 37 to 90 corrected with score 41
>CPSI-01D-01-000470 	gi|334693321|gb|AEG86539.1| putative inner membrane protein [Chlamydophila psittaci 01DC11]: S-rich region from 129 to 372 corrected with score 72
>CPSI-01D-01-000470 	gi|334693321|gb|AEG86539.1| putative inner membrane protein [Chlamydophila psittaci 01DC11]: E-rich region from 343 to 371 corrected with score 52
>CPSI-01D-01-000470 	gi|334693321|gb|AEG86539.1| putative inner membrane protein [Chlamydophila psittaci 01DC11]: Q-rich region from 106 to 239 corrected with score 51
>CPSI-01D-01-000479 	gi|334693312|gb|AEG86530.1| hypothetical protein CPS0A_0552 [Chlamydophila psittaci 01DC11]: I-rich region from 100 to 139 corrected with score 51
>CPSI-01D-01-000483 	gi|334693308|gb|AEG86526.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 145 to 241 corrected with score 52
>CPSI-01D-01-000485 	gi|334693306|gb|AEG86524.1| putative amino acid permease [Chlamydophila psittaci 01DC11]: W-rich region from 81 to 98 corrected with score 40
>CPSI-01D-01-000486 	gi|334693305|gb|AEG86523.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: I-rich region from 1 to 51 corrected with score 53
>CPSI-01D-01-000489 	gi|334693302|gb|AEG86520.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: V-rich region from 56 to 101 corrected with score 54
>CPSI-01D-01-000492 	gi|334693299|gb|AEG86517.1| inclusion membrane protein B [Chlamydophila psittaci 01DC11]: I-rich region from 119 to 186 corrected with score 44
>CPSI-01D-01-000493 	gi|334693298|gb|AEG86516.1| inclusion membrane protein C [Chlamydophila psittaci 01DC11]: V-rich region from 110 to 169 corrected with score 52
>CPSI-01D-01-000502 	gi|334693289|gb|AEG86507.1| putative ompH-like outer membrane protein [Chlamydophila psittaci 01DC11]: E-rich region from 42 to 106 corrected with score 51
>CPSI-01D-01-000518 	gi|334693273|gb|AEG86491.1| translation initiation factor IF-2 [Chlamydophila psittaci 01DC11]: P-rich region from 106 to 157 corrected with score 60
>CPSI-01D-01-000518 	gi|334693273|gb|AEG86491.1| translation initiation factor IF-2 [Chlamydophila psittaci 01DC11]: K-rich region from 180 to 279 corrected with score 59
>CPSI-01D-01-000518 	gi|334693273|gb|AEG86491.1| translation initiation factor IF-2 [Chlamydophila psittaci 01DC11]: S-rich region from 22 to 105 corrected with score 51
>CPSI-01D-01-000523 	gi|334693268|gb|AEG86486.1| type III secretion system protein [Chlamydophila psittaci 01DC11]: V-rich region from 134 to 204 corrected with score 41
>CPSI-01D-01-000524 	gi|334693267|gb|AEG86485.1| putative membrane transport protein [Chlamydophila psittaci 01DC11]: L-rich region from 8 to 72 corrected with score 54
>CPSI-01D-01-000525 	gi|334693266|gb|AEG86484.1| secretion and cellular translocation protein W [Chlamydophila psittaci 01DC11]: E-rich region from 27 to 126 corrected with score 44
>CPSI-01D-01-000525 	gi|334693266|gb|AEG86484.1| secretion and cellular translocation protein W [Chlamydophila psittaci 01DC11]: A-rich region from 2 to 36 corrected with score 43
>CPSI-01D-01-000531 	gi|334693260|gb|AEG86478.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: K-rich region from 51 to 71 corrected with score 40
>CPSI-01D-01-000532 	gi|334693259|gb|AEG86477.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 4 to 403 corrected with score 136
>CPSI-01D-01-000533 	gi|334693258|gb|AEG86476.1| late transcription unit B protein [Chlamydophila psittaci 01DC11]: K-rich region from 6 to 41 corrected with score 43
>CPSI-01D-01-000549 	gi|334693242|gb|AEG86460.1| putative membrane protein [Chlamydophila psittaci 01DC11]: I-rich region from 32 to 82 corrected with score 52
>CPSI-01D-01-000550 	gi|334693241|gb|AEG86459.1| GTP-binding protein [Chlamydophila psittaci 01DC11]: K-rich region from 567 to 587 corrected with score 41
>CPSI-01D-01-000555 	gi|334693236|gb|AEG86454.1| type III secretion system protein [Chlamydophila psittaci 01DC11]: L-rich region from 1 to 74 corrected with score 42
>CPSI-01D-01-000557 	gi|334693234|gb|AEG86452.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: P-rich region from 119 to 206 corrected with score 96
>CPSI-01D-01-000557 	gi|334693234|gb|AEG86452.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: A-rich region from 32 to 75 corrected with score 42
>CPSI-01D-01-000558 	gi|334693233|gb|AEG86451.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: I-rich region from 26 to 77 corrected with score 42
>CPSI-01D-01-000564 	gi|334693227|gb|AEG86445.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 27 to 127 corrected with score 64
>CPSI-01D-01-000566 	gi|334693225|gb|AEG86443.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: P-rich region from 259 to 304 corrected with score 140
>CPSI-01D-01-000566 	gi|334693225|gb|AEG86443.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 36 to 450 corrected with score 94
>CPSI-01D-01-000567 	gi|334693224|gb|AEG86442.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: P-rich region from 351 to 367 corrected with score 62
>CPSI-01D-01-000567 	gi|334693224|gb|AEG86442.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: N-rich region from 2 to 36 corrected with score 42
>CPSI-01D-01-000571 	gi|334693220|gb|AEG86438.1| histone histone-like protein HC2 [Chlamydophila psittaci 01DC11]: K-rich region from 5 to 148 corrected with score 153
>CPSI-01D-01-000571 	gi|334693220|gb|AEG86438.1| histone histone-like protein HC2 [Chlamydophila psittaci 01DC11]: T-rich region from 9 to 137 corrected with score 90
>CPSI-01D-01-000575 	gi|334693216|gb|AEG86434.1| putative glycosyl hydrolase [Chlamydophila psittaci 01DC11]: N-rich region from 449 to 480 corrected with score 41
>CPSI-01D-01-000585 	gi|334693206|gb|AEG86424.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: V-rich region from 35 to 83 corrected with score 46
>CPSI-01D-01-000586 	gi|334693205|gb|AEG86423.1| hypothetical protein CPS0A_0436 [Chlamydophila psittaci 01DC11]: T-rich region from 5 to 71 corrected with score 43
>CPSI-01D-01-000593 	gi|334693198|gb|AEG86416.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: Q-rich region from 459 to 593 corrected with score 60
>CPSI-01D-01-000593 	gi|334693198|gb|AEG86416.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: C-rich region from 178 to 197 corrected with score 52
>CPSI-01D-01-000594 	gi|334693197|gb|AEG86415.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 24 to 181 corrected with score 44
>CPSI-01D-01-000612 	gi|334693179|gb|AEG86397.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: D-rich region from 99 to 115 corrected with score 41
>CPSI-01D-01-000627 	gi|334693164|gb|AEG86382.1| ATP-dependent Clp protease ATP-binding subunit [Chlamydophila psittaci 01DC11]: E-rich region from 431 to 497 corrected with score 50
>CPSI-01D-01-000627 	gi|334693164|gb|AEG86382.1| ATP-dependent Clp protease ATP-binding subunit [Chlamydophila psittaci 01DC11]: S-rich region from 153 to 185 corrected with score 48
>CPSI-01D-01-000632 	gi|334693159|gb|AEG86377.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: K-rich region from 47 to 145 corrected with score 80
>CPSI-01D-01-000632 	gi|334693159|gb|AEG86377.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 327 to 425 corrected with score 54
>CPSI-01D-01-000652 	gi|334693139|gb|AEG86357.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: F-rich region from 245 to 273 corrected with score 41
>CPSI-01D-01-000655 	gi|334693136|gb|AEG86354.1| chaperone protein [Chlamydophila psittaci 01DC11]: G-rich region from 67 to 133 corrected with score 66
>CPSI-01D-01-000656 	gi|334693135|gb|AEG86353.1| 30S ribosomal protein S21 [Chlamydophila psittaci 01DC11]: K-rich region from 20 to 58 corrected with score 40
>CPSI-01D-01-000660 	gi|334693131|gb|AEG86349.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 154 to 203 corrected with score 54
>CPSI-01D-01-000660 	gi|334693131|gb|AEG86349.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: I-rich region from 37 to 88 corrected with score 50
>CPSI-01D-01-000660 	gi|334693131|gb|AEG86349.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: K-rich region from 122 to 167 corrected with score 47
>CPSI-01D-01-000686 	gi|334693105|gb|AEG86323.1| putative inner membrane protein [Chlamydophila psittaci 01DC11]: S-rich region from 238 to 375 corrected with score 46
>CPSI-01D-01-000691 	gi|334693100|gb|AEG86318.1| polymorphic outer membrane protein [Chlamydophila psittaci 01DC11]: S-rich region from 11 to 299 corrected with score 213
>CPSI-01D-01-000691 	gi|334693100|gb|AEG86318.1| polymorphic outer membrane protein [Chlamydophila psittaci 01DC11]: E-rich region from 88 to 199 corrected with score 69
>CPSI-01D-01-000692 	gi|334693099|gb|AEG86317.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 122 to 539 corrected with score 84
>CPSI-01D-01-000693 	gi|334693098|gb|AEG86316.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 11 to 291 corrected with score 99
>CPSI-01D-01-000694 	gi|334693097|gb|AEG86315.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 11 to 479 corrected with score 102
>CPSI-01D-01-000695 	gi|334693096|gb|AEG86314.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 11 to 475 corrected with score 93
>CPSI-01D-01-000695 	gi|334693096|gb|AEG86314.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: T-rich region from 373 to 480 corrected with score 43
>CPSI-01D-01-000696 	gi|334693095|gb|AEG86313.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 2 to 462 corrected with score 87
>CPSI-01D-01-000697 	gi|334693094|gb|AEG86312.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 11 to 481 corrected with score 105
>CPSI-01D-01-000698 	gi|334693093|gb|AEG86311.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 12 to 248 corrected with score 68
>CPSI-01D-01-000699 	gi|334693092|gb|AEG86310.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 12 to 243 corrected with score 77
>CPSI-01D-01-000700 	gi|334693091|gb|AEG86309.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 11 to 520 corrected with score 146
>CPSI-01D-01-000700 	gi|334693091|gb|AEG86309.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: P-rich region from 203 to 215 corrected with score 41
>CPSI-01D-01-000702 	gi|334693089|gb|AEG86307.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: S-rich region from 47 to 682 corrected with score 118
>CPSI-01D-01-000702 	gi|334693089|gb|AEG86307.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: P-rich region from 242 to 251 corrected with score 54
>CPSI-01D-01-000702 	gi|334693089|gb|AEG86307.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: T-rich region from 550 to 598 corrected with score 53
>CPSI-01D-01-000702 	gi|334693089|gb|AEG86307.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 01DC11]: A-rich region from 560 to 586 corrected with score 42
>CPSI-01D-01-000703 	gi|334693088|gb|AEG86306.1| polymorphic outer membrane protein H family [Chlamydophila psittaci 01DC11]: S-rich region from 61 to 604 corrected with score 105
>CPSI-01D-01-000706 	gi|334693085|gb|AEG86303.1| polymorphic outer membrane protein E family [Chlamydophila psittaci 01DC11]: S-rich region from 58 to 375 corrected with score 55
>CPSI-01D-01-000707 	gi|334693084|gb|AEG86302.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: P-rich region from 636 to 650 corrected with score 51
>CPSI-01D-01-000712 	gi|334693079|gb|AEG86297.1| GTP-binding protein [Chlamydophila psittaci 01DC11]: K-rich region from 183 to 225 corrected with score 41
>CPSI-01D-01-000716 	gi|334693075|gb|AEG86293.1| putative membrane protein [Chlamydophila psittaci 01DC11]: P-rich region from 66 to 218 corrected with score 209
>CPSI-01D-01-000726 	gi|334693065|gb|AEG86283.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: K-rich region from 55 to 242 corrected with score 62
>CPSI-01D-01-000735 	gi|334693056|gb|AEG86274.1| molecular chaperone protein DnaK [Chlamydophila psittaci 01DC11]: E-rich region from 493 to 589 corrected with score 68
>CPSI-01D-01-000735 	gi|334693056|gb|AEG86274.1| molecular chaperone protein DnaK [Chlamydophila psittaci 01DC11]: S-rich region from 585 to 645 corrected with score 40
>CPSI-01D-01-000736 	gi|334693055|gb|AEG86273.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci 01DC11]: K-rich region from 652 to 681 corrected with score 43
>CPSI-01D-01-000749 	gi|334693042|gb|AEG86260.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: D-rich region from 304 to 312 corrected with score 44
>CPSI-01D-01-000755 	gi|334693036|gb|AEG86254.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 25 to 174 corrected with score 60
>CPSI-01D-01-000770 	gi|334693021|gb|AEG86239.1| polymorphic outer membrane protein B family [Chlamydophila psittaci 01DC11]: S-rich region from 21 to 1342 corrected with score 171
>CPSI-01D-01-000770 	gi|334693021|gb|AEG86239.1| polymorphic outer membrane protein B family [Chlamydophila psittaci 01DC11]: P-rich region from 84 to 94 corrected with score 44
>CPSI-01D-01-000775 	gi|334693016|gb|AEG86234.1| putative transport protein [Chlamydophila psittaci 01DC11]: L-rich region from 141 to 237 corrected with score 62
>CPSI-01D-01-000776 	gi|334693015|gb|AEG86233.1| GTPase [Chlamydophila psittaci 01DC11]: G-rich region from 31 to 43 corrected with score 40
>CPSI-01D-01-000805 	gi|334692986|gb|AEG86204.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: T-rich region from 9 to 143 corrected with score 115
>CPSI-01D-01-000805 	gi|334692986|gb|AEG86204.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 614 to 861 corrected with score 67
>CPSI-01D-01-000805 	gi|334692986|gb|AEG86204.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 35 to 145 corrected with score 64
>CPSI-01D-01-000805 	gi|334692986|gb|AEG86204.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: T-rich region from 382 to 436 corrected with score 62
>CPSI-01D-01-000805 	gi|334692986|gb|AEG86204.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: P-rich region from 452 to 463 corrected with score 58
>CPSI-01D-01-000818 	gi|334692973|gb|AEG86191.1| conserved membrane protein [Chlamydophila psittaci 01DC11]: E-rich region from 377 to 715 corrected with score 94
>CPSI-01D-01-000849 	gi|334692942|gb|AEG86160.1| ADP/ATP carrier family protein [Chlamydophila psittaci 01DC11]: I-rich region from 474 to 506 corrected with score 45
>CPSI-01D-01-000857 	gi|334692934|gb|AEG86152.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 65 to 258 corrected with score 57
>CPSI-01D-01-000858 	gi|334692933|gb|AEG86151.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 109 to 193 corrected with score 59
>CPSI-01D-01-000858 	gi|334692933|gb|AEG86151.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: K-rich region from 135 to 159 corrected with score 52
>CPSI-01D-01-000862 	gi|334692929|gb|AEG86147.1| 30S ribosomal protein S11 [Chlamydophila psittaci 01DC11]: A-rich region from 48 to 112 corrected with score 41
>CPSI-01D-01-000900 	gi|334692891|gb|AEG86109.1| hexose phosphate transport protein [Chlamydophila psittaci 01DC11]: E-rich region from 221 to 252 corrected with score 43
>CPSI-01D-01-000900 	gi|334692891|gb|AEG86109.1| hexose phosphate transport protein [Chlamydophila psittaci 01DC11]: W-rich region from 127 to 139 corrected with score 40
>CPSI-01D-01-000900 	gi|334692891|gb|AEG86109.1| hexose phosphate transport protein [Chlamydophila psittaci 01DC11]: Y-rich region from 27 to 47 corrected with score 40
>CPSI-01D-01-000907 	gi|334692884|gb|AEG86102.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 01DC11]: H-rich region from 136 to 151 corrected with score 41
>CPSI-01D-01-000911 	gi|334692880|gb|AEG86098.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 4 to 263 corrected with score 192
>CPSI-01D-01-000911 	gi|334692880|gb|AEG86098.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: P-rich region from 162 to 182 corrected with score 53
>CPSI-01D-01-000931 	gi|334692860|gb|AEG86078.1| ribosome recycling factor [Chlamydophila psittaci 01DC11]: K-rich region from 113 to 174 corrected with score 41
>CPSI-01D-01-000934 	gi|334692857|gb|AEG86075.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 01DC11]: K-rich region from 18 to 218 corrected with score 61
>CPSI-01D-01-000937 	gi|334692854|gb|AEG86072.1| outer protein E [Chlamydophila psittaci 01DC11]: Q-rich region from 251 to 281 corrected with score 61
>CPSI-01D-01-000937 	gi|334692854|gb|AEG86072.1| outer protein E [Chlamydophila psittaci 01DC11]: E-rich region from 21 to 89 corrected with score 57
>CPSI-01D-01-000938 	gi|334692853|gb|AEG86071.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 13 to 170 corrected with score 92
>CPSI-01D-01-000940 	gi|334692851|gb|AEG86069.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 72 to 149 corrected with score 41
>CPSI-01D-01-000944 	gi|334692847|gb|AEG86065.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 123 to 324 corrected with score 171
>CPSI-01D-01-000944 	gi|334692847|gb|AEG86065.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 113 to 261 corrected with score 46
>CPSI-01D-01-000948 	gi|334692843|gb|AEG86061.1| DNA topoisomerase IV subunit B [Chlamydophila psittaci 01DC11]: K-rich region from 322 to 381 corrected with score 47
>CPSI-01D-01-000959 	gi|334692832|gb|AEG86050.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: Q-rich region from 812 to 841 corrected with score 46
>CPSI-01D-01-000959 	gi|334692832|gb|AEG86050.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: E-rich region from 167 to 216 corrected with score 44
>CPSI-01D-01-000960 	gi|334692831|gb|AEG86049.1| conserved hypothetical protein [Chlamydophila psittaci 01DC11]: S-rich region from 9 to 579 corrected with score 113
>CPSI-02D-01-000000 	gi|334694770|gb|AEG87987.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: H-rich region from 274 to 279 corrected with score 40
>CPSI-02D-01-000008 	gi|334694762|gb|AEG87979.1| 30S ribosomal protein S20 [Chlamydophila psittaci 02DC15]: K-rich region from 4 to 45 corrected with score 44
>CPSI-02D-01-000009 	gi|334694761|gb|AEG87978.1| putative inner membrane protein [Chlamydophila psittaci 02DC15]: Q-rich region from 92 to 245 corrected with score 54
>CPSI-02D-01-000022 	gi|334694748|gb|AEG87965.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila psittaci 02DC15]: K-rich region from 743 to 783 corrected with score 60
>CPSI-02D-01-000022 	gi|334694748|gb|AEG87965.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila psittaci 02DC15]: T-rich region from 729 to 781 corrected with score 46
>CPSI-02D-01-000036 	gi|334694734|gb|AEG87951.1| putative exported TonB protein [Chlamydophila psittaci 02DC15]: K-rich region from 62 to 127 corrected with score 51
>CPSI-02D-01-000045 	gi|334694725|gb|AEG87942.1| putative membrane protein [Chlamydophila psittaci 02DC15]: V-rich region from 33 to 76 corrected with score 55
>CPSI-02D-01-000056 	gi|334694714|gb|AEG87931.1| outer protein D1 [Chlamydophila psittaci 02DC15]: A-rich region from 14 to 389 corrected with score 184
>CPSI-02D-01-000056 	gi|334694714|gb|AEG87931.1| outer protein D1 [Chlamydophila psittaci 02DC15]: S-rich region from 55 to 95 corrected with score 62
>CPSI-02D-01-000056 	gi|334694714|gb|AEG87931.1| outer protein D1 [Chlamydophila psittaci 02DC15]: Q-rich region from 376 to 433 corrected with score 56
>CPSI-02D-01-000057 	gi|334694713|gb|AEG87930.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: A-rich region from 51 to 361 corrected with score 149
>CPSI-02D-01-000058 	gi|334694712|gb|AEG87929.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: T-rich region from 8 to 34 corrected with score 41
>CPSI-02D-01-000059 	gi|334694711|gb|AEG87928.1| type III secretion chaperone low calcium response protein [Chlamydophila psittaci 02DC15]: K-rich region from 178 to 227 corrected with score 48
>CPSI-02D-01-000070 	gi|334694700|gb|AEG87917.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: L-rich region from 105 to 134 corrected with score 43
>CPSI-02D-01-000071 	gi|334694699|gb|AEG87916.1| type III secretion inner membrane protein SctT [Chlamydophila psittaci 02DC15]: M-rich region from 165 to 257 corrected with score 47
>CPSI-02D-01-000073 	gi|334694697|gb|AEG87914.1| type III secretion inner membrane protein SctR [Chlamydophila psittaci 02DC15]: L-rich region from 92 to 120 corrected with score 43
>CPSI-02D-01-000073 	gi|334694697|gb|AEG87914.1| type III secretion inner membrane protein SctR [Chlamydophila psittaci 02DC15]: M-rich region from 248 to 302 corrected with score 42
>CPSI-02D-01-000076 	gi|334694694|gb|AEG87911.1| putative type III secretion system protein [Chlamydophila psittaci 02DC15]: E-rich region from 287 to 328 corrected with score 51
>CPSI-02D-01-000088 	gi|334694682|gb|AEG87899.1| ribosome-associated GTPase [Chlamydophila psittaci 02DC15]: E-rich region from 166 to 210 corrected with score 47
>CPSI-02D-01-000093 	gi|334694677|gb|AEG87894.1| SNF2 family helicase [Chlamydophila psittaci 02DC15]: E-rich region from 88 to 129 corrected with score 43
>CPSI-02D-01-000098 	gi|334694672|gb|AEG87889.1| outer membrane protein ompB [Chlamydophila psittaci 02DC15]: S-rich region from 12 to 140 corrected with score 40
>CPSI-02D-01-000119 	gi|334694651|gb|AEG87868.1| putative lipoprotein [Chlamydophila psittaci 02DC15]: K-rich region from 29 to 91 corrected with score 43
>CPSI-02D-01-000129 	gi|334694641|gb|AEG87858.1| histone H1-like protein HC1 [Chlamydophila psittaci 02DC15]: K-rich region from 4 to 123 corrected with score 110
>CPSI-02D-01-000129 	gi|334694641|gb|AEG87858.1| histone H1-like protein HC1 [Chlamydophila psittaci 02DC15]: A-rich region from 67 to 120 corrected with score 49
>CPSI-02D-01-000145 	gi|334694625|gb|AEG87842.1| LysM domain protein [Chlamydophila psittaci 02DC15]: P-rich region from 94 to 116 corrected with score 44
>CPSI-02D-01-000155 	gi|334694615|gb|AEG87832.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: Q-rich region from 378 to 551 corrected with score 42
>CPSI-02D-01-000174 	gi|334694596|gb|AEG87813.1| 30S ribosomal protein S14 [Chlamydophila psittaci 02DC15]: K-rich region from 3 to 53 corrected with score 48
>CPSI-02D-01-000176 	gi|334694594|gb|AEG87811.1| excinuclease ABC subunit C [Chlamydophila psittaci 02DC15]: S-rich region from 591 to 627 corrected with score 68
>CPSI-02D-01-000200 	gi|334694570|gb|AEG87787.1| polymorphic outer membrane protein D family [Chlamydophila psittaci 02DC15]: S-rich region from 177 to 862 corrected with score 104
>CPSI-02D-01-000203 	gi|334694567|gb|AEG87784.1| conserved membrane protein [Chlamydophila psittaci 02DC15]: L-rich region from 59 to 93 corrected with score 41
>CPSI-02D-01-000204 	gi|334694566|gb|AEG87783.1| putative TMH-family membrane protein [Chlamydophila psittaci 02DC15]: V-rich region from 27 to 76 corrected with score 41
>CPSI-02D-01-000205 	gi|334694565|gb|AEG87782.1| putative TMH-family membrane protein [Chlamydophila psittaci 02DC15]: Q-rich region from 85 to 290 corrected with score 99
>CPSI-02D-01-000206 	gi|334694564|gb|AEG87781.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 139 to 810 corrected with score 137
>CPSI-02D-01-000206 	gi|334694564|gb|AEG87781.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: I-rich region from 4 to 91 corrected with score 44
>CPSI-02D-01-000208 	gi|334694562|gb|AEG87779.1| putative TMH-family membrane protein [Chlamydophila psittaci 02DC15]: E-rich region from 101 to 459 corrected with score 48
>CPSI-02D-01-000209 	gi|334694561|gb|AEG87778.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 86 to 234 corrected with score 77
>CPSI-02D-01-000209 	gi|334694561|gb|AEG87778.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: I-rich region from 28 to 75 corrected with score 49
>CPSI-02D-01-000210 	gi|334694560|gb|AEG87777.1| putative TMH-family membrane protein [Chlamydophila psittaci 02DC15]: Q-rich region from 105 to 289 corrected with score 73
>CPSI-02D-01-000210 	gi|334694560|gb|AEG87777.1| putative TMH-family membrane protein [Chlamydophila psittaci 02DC15]: I-rich region from 27 to 78 corrected with score 51
>CPSI-02D-01-000211 	gi|334694559|gb|AEG87776.1| putative TMH-family membrane protein [Chlamydophila psittaci 02DC15]: I-rich region from 27 to 74 corrected with score 46
>CPSI-02D-01-000233 	gi|334694537|gb|AEG87754.1| 50S ribosomal protein L35 [Chlamydophila psittaci 02DC15]: K-rich region from 3 to 47 corrected with score 43
>CPSI-02D-01-000236 	gi|334694534|gb|AEG87751.1| calcium binding EF-hand protein precursor [Chlamydophila psittaci 02DC15]: E-rich region from 126 to 175 corrected with score 66
>CPSI-02D-01-000246 	gi|334694524|gb|AEG87741.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: Q-rich region from 87 to 138 corrected with score 52
>CPSI-02D-01-000248 	gi|334694522|gb|AEG87739.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: Q-rich region from 49 to 125 corrected with score 47
>CPSI-02D-01-000250 	gi|334694520|gb|AEG87737.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 130 to 416 corrected with score 48
>CPSI-02D-01-000262 	gi|334694508|gb|AEG87725.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 2 to 223 corrected with score 103
>CPSI-02D-01-000262 	gi|334694508|gb|AEG87725.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 232 to 277 corrected with score 56
>CPSI-02D-01-000263 	gi|334694507|gb|AEG87724.1| conserved membrane protein [Chlamydophila psittaci 02DC15]: S-rich region from 21 to 243 corrected with score 48
>CPSI-02D-01-000265 	gi|334694505|gb|AEG87722.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: Q-rich region from 111 to 314 corrected with score 111
>CPSI-02D-01-000265 	gi|334694505|gb|AEG87722.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 7 to 235 corrected with score 79
>CPSI-02D-01-000266 	gi|334694504|gb|AEG87721.1| lipoprotein [Chlamydophila psittaci 02DC15]: Y-rich region from 52 to 71 corrected with score 50
>CPSI-02D-01-000271 	gi|334694499|gb|AEG87716.1| putative transmembrane protein [Chlamydophila psittaci 02DC15]: L-rich region from 100 to 170 corrected with score 42
>CPSI-02D-01-000297 	gi|334694473|gb|AEG87690.1| putative transmembrane protein [Chlamydophila psittaci 02DC15]: I-rich region from 29 to 77 corrected with score 47
>CPSI-02D-01-000298 	gi|334694472|gb|AEG87689.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: P-rich region from 418 to 492 corrected with score 42
>CPSI-02D-01-000309 	gi|334694461|gb|AEG87678.1| 50S ribosomal protein L7/L12 [Chlamydophila psittaci 02DC15]: A-rich region from 34 to 71 corrected with score 49
>CPSI-02D-01-000314 	gi|334694456|gb|AEG87673.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 12 to 81 corrected with score 52
>CPSI-02D-01-000339 	gi|334694431|gb|AEG87648.1| signal peptidase I [Chlamydophila psittaci 02DC15]: Q-rich region from 22 to 64 corrected with score 41
>CPSI-02D-01-000355 	gi|334694415|gb|AEG87632.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: V-rich region from 34 to 79 corrected with score 40
>CPSI-02D-01-000372 	gi|334694398|gb|AEG87615.1| chaperone protease clpB [Chlamydophila psittaci 02DC15]: E-rich region from 412 to 534 corrected with score 68
>CPSI-02D-01-000373 	gi|334694397|gb|AEG87614.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: T-rich region from 364 to 509 corrected with score 88
>CPSI-02D-01-000373 	gi|334694397|gb|AEG87614.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 11 to 285 corrected with score 75
>CPSI-02D-01-000374 	gi|334694396|gb|AEG87613.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 11 to 472 corrected with score 99
>CPSI-02D-01-000375 	gi|334694395|gb|AEG87612.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 2 to 436 corrected with score 114
>CPSI-02D-01-000375 	gi|334694395|gb|AEG87612.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: T-rich region from 336 to 479 corrected with score 54
>CPSI-02D-01-000381 	gi|334694389|gb|AEG87606.1| putative serine/threonine protein kinase [Chlamydophila psittaci 02DC15]: E-rich region from 284 to 378 corrected with score 46
>CPSI-02D-01-000383 	gi|334694387|gb|AEG87604.1| putative transmembrane protein [Chlamydophila psittaci 02DC15]: I-rich region from 69 to 103 corrected with score 45
>CPSI-02D-01-000383 	gi|334694387|gb|AEG87604.1| putative transmembrane protein [Chlamydophila psittaci 02DC15]: Q-rich region from 1033 to 1102 corrected with score 40
>CPSI-02D-01-000406 	gi|334694364|gb|AEG87581.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 185 to 223 corrected with score 52
>CPSI-02D-01-000406 	gi|334694364|gb|AEG87581.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: L-rich region from 44 to 100 corrected with score 51
>CPSI-02D-01-000418 	gi|334694352|gb|AEG87569.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: I-rich region from 1 to 53 corrected with score 41
>CPSI-02D-01-000424 	gi|334694346|gb|AEG87563.1| MAC/perforin family protein [Chlamydophila psittaci 02DC15]: S-rich region from 530 to 563 corrected with score 44
>CPSI-02D-01-000426 	gi|334694344|gb|AEG87561.1| LOW QUALITY PROTEIN: adherence factor [Chlamydophila psittaci 02DC15]: S-rich region from 8 to 192 corrected with score 75
>CPSI-02D-01-000426 	gi|334694344|gb|AEG87561.1| LOW QUALITY PROTEIN: adherence factor [Chlamydophila psittaci 02DC15]: A-rich region from 1941 to 2047 corrected with score 62
>CPSI-02D-01-000427 	gi|334694343|gb|AEG87560.1| hypothetical protein CPS0B_0610 [Chlamydophila psittaci 02DC15]: I-rich region from 62 to 100 corrected with score 40
>CPSI-02D-01-000439 	gi|334694331|gb|AEG87548.1| inclusion membrane protein A [Chlamydophila psittaci 02DC15]: V-rich region from 46 to 117 corrected with score 60
>CPSI-02D-01-000451 	gi|334694319|gb|AEG87536.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: A-rich region from 100 to 176 corrected with score 56
>CPSI-02D-01-000456 	gi|334694314|gb|AEG87531.1| 30S ribosomal protein S9 [Chlamydophila psittaci 02DC15]: K-rich region from 92 to 133 corrected with score 46
>CPSI-02D-01-000460 	gi|334694310|gb|AEG87527.1| ABC transporter, permease protein [Chlamydophila psittaci 02DC15]: I-rich region from 360 to 385 corrected with score 40
>CPSI-02D-01-000463 	gi|334694307|gb|AEG87524.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: N-rich region from 41 to 89 corrected with score 41
>CPSI-02D-01-000473 	gi|334694297|gb|AEG87514.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 222 to 368 corrected with score 45
>CPSI-02D-01-000473 	gi|334694297|gb|AEG87514.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: V-rich region from 37 to 90 corrected with score 41
>CPSI-02D-01-000474 	gi|334694296|gb|AEG87513.1| putative inner membrane protein [Chlamydophila psittaci 02DC15]: S-rich region from 129 to 372 corrected with score 72
>CPSI-02D-01-000474 	gi|334694296|gb|AEG87513.1| putative inner membrane protein [Chlamydophila psittaci 02DC15]: E-rich region from 343 to 371 corrected with score 52
>CPSI-02D-01-000474 	gi|334694296|gb|AEG87513.1| putative inner membrane protein [Chlamydophila psittaci 02DC15]: Q-rich region from 106 to 239 corrected with score 51
>CPSI-02D-01-000483 	gi|334694287|gb|AEG87504.1| hypothetical protein CPS0B_0548 [Chlamydophila psittaci 02DC15]: I-rich region from 100 to 139 corrected with score 51
>CPSI-02D-01-000487 	gi|334694283|gb|AEG87500.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 145 to 241 corrected with score 52
>CPSI-02D-01-000489 	gi|334694281|gb|AEG87498.1| putative amino acid permease [Chlamydophila psittaci 02DC15]: W-rich region from 81 to 98 corrected with score 40
>CPSI-02D-01-000490 	gi|334694280|gb|AEG87497.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: I-rich region from 1 to 51 corrected with score 53
>CPSI-02D-01-000493 	gi|334694277|gb|AEG87494.1| hypothetical protein CPS0B_0538 [Chlamydophila psittaci 02DC15]: V-rich region from 56 to 101 corrected with score 54
>CPSI-02D-01-000496 	gi|334694274|gb|AEG87491.1| inclusion membrane protein B [Chlamydophila psittaci 02DC15]: I-rich region from 119 to 186 corrected with score 44
>CPSI-02D-01-000497 	gi|334694273|gb|AEG87490.1| inclusion membrane protein C [Chlamydophila psittaci 02DC15]: V-rich region from 110 to 169 corrected with score 52
>CPSI-02D-01-000506 	gi|334694264|gb|AEG87481.1| putative ompH-like outer membrane protein [Chlamydophila psittaci 02DC15]: E-rich region from 42 to 106 corrected with score 51
>CPSI-02D-01-000522 	gi|334694248|gb|AEG87465.1| translation initiation factor IF-2 [Chlamydophila psittaci 02DC15]: P-rich region from 106 to 157 corrected with score 60
>CPSI-02D-01-000522 	gi|334694248|gb|AEG87465.1| translation initiation factor IF-2 [Chlamydophila psittaci 02DC15]: K-rich region from 180 to 279 corrected with score 59
>CPSI-02D-01-000522 	gi|334694248|gb|AEG87465.1| translation initiation factor IF-2 [Chlamydophila psittaci 02DC15]: S-rich region from 22 to 105 corrected with score 51
>CPSI-02D-01-000527 	gi|334694243|gb|AEG87460.1| type III secretion system protein [Chlamydophila psittaci 02DC15]: V-rich region from 134 to 204 corrected with score 41
>CPSI-02D-01-000528 	gi|334694242|gb|AEG87459.1| putative type III secretion inner membrane protein [Chlamydophila psittaci 02DC15]: L-rich region from 8 to 72 corrected with score 54
>CPSI-02D-01-000529 	gi|334694241|gb|AEG87458.1| secretion and cellular translocation protein W [Chlamydophila psittaci 02DC15]: E-rich region from 27 to 126 corrected with score 44
>CPSI-02D-01-000529 	gi|334694241|gb|AEG87458.1| secretion and cellular translocation protein W [Chlamydophila psittaci 02DC15]: A-rich region from 2 to 36 corrected with score 43
>CPSI-02D-01-000535 	gi|334694235|gb|AEG87452.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: K-rich region from 51 to 71 corrected with score 40
>CPSI-02D-01-000536 	gi|334694234|gb|AEG87451.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 4 to 403 corrected with score 136
>CPSI-02D-01-000537 	gi|334694233|gb|AEG87450.1| late transcription unit B protein [Chlamydophila psittaci 02DC15]: K-rich region from 6 to 41 corrected with score 43
>CPSI-02D-01-000553 	gi|334694217|gb|AEG87434.1| putative membrane protein [Chlamydophila psittaci 02DC15]: I-rich region from 32 to 82 corrected with score 52
>CPSI-02D-01-000554 	gi|334694216|gb|AEG87433.1| GTP-binding protein [Chlamydophila psittaci 02DC15]: K-rich region from 567 to 587 corrected with score 41
>CPSI-02D-01-000559 	gi|334694211|gb|AEG87428.1| type III secretion system protein [Chlamydophila psittaci 02DC15]: L-rich region from 1 to 74 corrected with score 42
>CPSI-02D-01-000561 	gi|334694209|gb|AEG87426.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: P-rich region from 119 to 206 corrected with score 96
>CPSI-02D-01-000561 	gi|334694209|gb|AEG87426.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: A-rich region from 32 to 75 corrected with score 42
>CPSI-02D-01-000568 	gi|334694202|gb|AEG87419.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 27 to 127 corrected with score 64
>CPSI-02D-01-000570 	gi|334694200|gb|AEG87417.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: P-rich region from 259 to 304 corrected with score 140
>CPSI-02D-01-000570 	gi|334694200|gb|AEG87417.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 36 to 450 corrected with score 94
>CPSI-02D-01-000571 	gi|334694199|gb|AEG87416.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: P-rich region from 351 to 367 corrected with score 62
>CPSI-02D-01-000571 	gi|334694199|gb|AEG87416.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: N-rich region from 2 to 36 corrected with score 42
>CPSI-02D-01-000575 	gi|334694195|gb|AEG87412.1| histone histone-like protein HC2 [Chlamydophila psittaci 02DC15]: K-rich region from 5 to 148 corrected with score 153
>CPSI-02D-01-000575 	gi|334694195|gb|AEG87412.1| histone histone-like protein HC2 [Chlamydophila psittaci 02DC15]: T-rich region from 9 to 137 corrected with score 90
>CPSI-02D-01-000579 	gi|334694191|gb|AEG87408.1| putative glycosyl hydrolase [Chlamydophila psittaci 02DC15]: N-rich region from 449 to 480 corrected with score 41
>CPSI-02D-01-000589 	gi|334694181|gb|AEG87398.1| hypothetical protein CPS0B_0435 [Chlamydophila psittaci 02DC15]: V-rich region from 35 to 83 corrected with score 46
>CPSI-02D-01-000590 	gi|334694180|gb|AEG87397.1| hypothetical protein CPS0B_0433 [Chlamydophila psittaci 02DC15]: T-rich region from 5 to 71 corrected with score 43
>CPSI-02D-01-000597 	gi|334694173|gb|AEG87390.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: Q-rich region from 459 to 593 corrected with score 60
>CPSI-02D-01-000597 	gi|334694173|gb|AEG87390.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: C-rich region from 178 to 197 corrected with score 52
>CPSI-02D-01-000598 	gi|334694172|gb|AEG87389.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 24 to 181 corrected with score 44
>CPSI-02D-01-000616 	gi|334694154|gb|AEG87371.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: D-rich region from 99 to 115 corrected with score 41
>CPSI-02D-01-000631 	gi|334694139|gb|AEG87356.1| ATP-dependent Clp protease ATP-binding subunit [Chlamydophila psittaci 02DC15]: E-rich region from 431 to 497 corrected with score 50
>CPSI-02D-01-000631 	gi|334694139|gb|AEG87356.1| ATP-dependent Clp protease ATP-binding subunit [Chlamydophila psittaci 02DC15]: S-rich region from 153 to 185 corrected with score 48
>CPSI-02D-01-000636 	gi|334694134|gb|AEG87351.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: K-rich region from 47 to 145 corrected with score 84
>CPSI-02D-01-000636 	gi|334694134|gb|AEG87351.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 327 to 425 corrected with score 54
>CPSI-02D-01-000656 	gi|334694114|gb|AEG87331.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: F-rich region from 245 to 273 corrected with score 41
>CPSI-02D-01-000659 	gi|334694111|gb|AEG87328.1| chaperone protein [Chlamydophila psittaci 02DC15]: G-rich region from 67 to 133 corrected with score 66
>CPSI-02D-01-000660 	gi|334694110|gb|AEG87327.1| 30S ribosomal protein S21 [Chlamydophila psittaci 02DC15]: K-rich region from 20 to 58 corrected with score 40
>CPSI-02D-01-000664 	gi|334694106|gb|AEG87323.1| incA family protein [Chlamydophila psittaci 02DC15]: S-rich region from 154 to 203 corrected with score 54
>CPSI-02D-01-000664 	gi|334694106|gb|AEG87323.1| incA family protein [Chlamydophila psittaci 02DC15]: I-rich region from 37 to 88 corrected with score 50
>CPSI-02D-01-000664 	gi|334694106|gb|AEG87323.1| incA family protein [Chlamydophila psittaci 02DC15]: K-rich region from 122 to 167 corrected with score 47
>CPSI-02D-01-000690 	gi|334694080|gb|AEG87297.1| putative inner membrane protein [Chlamydophila psittaci 02DC15]: S-rich region from 238 to 375 corrected with score 46
>CPSI-02D-01-000695 	gi|334694075|gb|AEG87292.1| polymorphic outer membrane protein [Chlamydophila psittaci 02DC15]: S-rich region from 11 to 299 corrected with score 213
>CPSI-02D-01-000695 	gi|334694075|gb|AEG87292.1| polymorphic outer membrane protein [Chlamydophila psittaci 02DC15]: E-rich region from 88 to 199 corrected with score 69
>CPSI-02D-01-000696 	gi|334694074|gb|AEG87291.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 122 to 539 corrected with score 84
>CPSI-02D-01-000697 	gi|334694073|gb|AEG87290.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 8 to 267 corrected with score 98
>CPSI-02D-01-000698 	gi|334694072|gb|AEG87289.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 11 to 479 corrected with score 102
>CPSI-02D-01-000699 	gi|334694071|gb|AEG87288.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 11 to 475 corrected with score 93
>CPSI-02D-01-000699 	gi|334694071|gb|AEG87288.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: T-rich region from 373 to 480 corrected with score 43
>CPSI-02D-01-000700 	gi|334694070|gb|AEG87287.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 11 to 471 corrected with score 87
>CPSI-02D-01-000701 	gi|334694069|gb|AEG87286.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 11 to 481 corrected with score 105
>CPSI-02D-01-000702 	gi|334694068|gb|AEG87285.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 12 to 248 corrected with score 68
>CPSI-02D-01-000703 	gi|334694067|gb|AEG87284.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 12 to 243 corrected with score 77
>CPSI-02D-01-000704 	gi|334694066|gb|AEG87283.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 11 to 520 corrected with score 151
>CPSI-02D-01-000704 	gi|334694066|gb|AEG87283.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: P-rich region from 203 to 215 corrected with score 41
>CPSI-02D-01-000706 	gi|334694064|gb|AEG87281.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: S-rich region from 47 to 682 corrected with score 118
>CPSI-02D-01-000706 	gi|334694064|gb|AEG87281.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: P-rich region from 242 to 251 corrected with score 54
>CPSI-02D-01-000706 	gi|334694064|gb|AEG87281.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: T-rich region from 550 to 598 corrected with score 53
>CPSI-02D-01-000706 	gi|334694064|gb|AEG87281.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 02DC15]: A-rich region from 560 to 586 corrected with score 42
>CPSI-02D-01-000707 	gi|334694063|gb|AEG87280.1| polymorphic outer membrane protein H family [Chlamydophila psittaci 02DC15]: S-rich region from 61 to 604 corrected with score 105
>CPSI-02D-01-000710 	gi|334694060|gb|AEG87277.1| polymorphic outer membrane protein E family [Chlamydophila psittaci 02DC15]: S-rich region from 58 to 375 corrected with score 55
>CPSI-02D-01-000711 	gi|334694059|gb|AEG87276.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: P-rich region from 636 to 650 corrected with score 51
>CPSI-02D-01-000716 	gi|334694054|gb|AEG87271.1| GTP-binding protein [Chlamydophila psittaci 02DC15]: K-rich region from 183 to 225 corrected with score 41
>CPSI-02D-01-000720 	gi|334694050|gb|AEG87267.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: P-rich region from 66 to 218 corrected with score 209
>CPSI-02D-01-000730 	gi|334694040|gb|AEG87257.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: K-rich region from 55 to 242 corrected with score 62
>CPSI-02D-01-000739 	gi|334694031|gb|AEG87248.1| molecular chaperone protein DnaK [Chlamydophila psittaci 02DC15]: E-rich region from 493 to 589 corrected with score 68
>CPSI-02D-01-000739 	gi|334694031|gb|AEG87248.1| molecular chaperone protein DnaK [Chlamydophila psittaci 02DC15]: S-rich region from 585 to 645 corrected with score 40
>CPSI-02D-01-000740 	gi|334694030|gb|AEG87247.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci 02DC15]: K-rich region from 652 to 681 corrected with score 43
>CPSI-02D-01-000753 	gi|334694017|gb|AEG87234.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: D-rich region from 304 to 312 corrected with score 44
>CPSI-02D-01-000759 	gi|334694011|gb|AEG87228.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 25 to 174 corrected with score 60
>CPSI-02D-01-000774 	gi|334693996|gb|AEG87213.1| polymorphic outer membrane protein B family [Chlamydophila psittaci 02DC15]: S-rich region from 21 to 1342 corrected with score 171
>CPSI-02D-01-000774 	gi|334693996|gb|AEG87213.1| polymorphic outer membrane protein B family [Chlamydophila psittaci 02DC15]: P-rich region from 84 to 94 corrected with score 44
>CPSI-02D-01-000779 	gi|334693991|gb|AEG87208.1| putative transport protein [Chlamydophila psittaci 02DC15]: L-rich region from 141 to 237 corrected with score 62
>CPSI-02D-01-000780 	gi|334693990|gb|AEG87207.1| GTPase [Chlamydophila psittaci 02DC15]: G-rich region from 31 to 43 corrected with score 40
>CPSI-02D-01-000809 	gi|334693961|gb|AEG87178.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: T-rich region from 9 to 143 corrected with score 115
>CPSI-02D-01-000809 	gi|334693961|gb|AEG87178.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 614 to 861 corrected with score 67
>CPSI-02D-01-000809 	gi|334693961|gb|AEG87178.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 35 to 145 corrected with score 64
>CPSI-02D-01-000809 	gi|334693961|gb|AEG87178.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: T-rich region from 382 to 436 corrected with score 62
>CPSI-02D-01-000809 	gi|334693961|gb|AEG87178.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: P-rich region from 452 to 463 corrected with score 58
>CPSI-02D-01-000822 	gi|334693948|gb|AEG87165.1| conserved membrane protein [Chlamydophila psittaci 02DC15]: E-rich region from 377 to 715 corrected with score 94
>CPSI-02D-01-000853 	gi|334693917|gb|AEG87134.1| ADP/ATP carrier family protein [Chlamydophila psittaci 02DC15]: I-rich region from 474 to 506 corrected with score 45
>CPSI-02D-01-000861 	gi|334693909|gb|AEG87126.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 65 to 258 corrected with score 57
>CPSI-02D-01-000862 	gi|334693908|gb|AEG87125.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 109 to 193 corrected with score 59
>CPSI-02D-01-000862 	gi|334693908|gb|AEG87125.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: K-rich region from 135 to 159 corrected with score 52
>CPSI-02D-01-000866 	gi|334693904|gb|AEG87121.1| 30S ribosomal protein S11 [Chlamydophila psittaci 02DC15]: A-rich region from 48 to 112 corrected with score 41
>CPSI-02D-01-000904 	gi|334693866|gb|AEG87083.1| hexose phosphate transport protein [Chlamydophila psittaci 02DC15]: E-rich region from 221 to 252 corrected with score 43
>CPSI-02D-01-000904 	gi|334693866|gb|AEG87083.1| hexose phosphate transport protein [Chlamydophila psittaci 02DC15]: W-rich region from 127 to 139 corrected with score 40
>CPSI-02D-01-000904 	gi|334693866|gb|AEG87083.1| hexose phosphate transport protein [Chlamydophila psittaci 02DC15]: Y-rich region from 27 to 47 corrected with score 40
>CPSI-02D-01-000911 	gi|334693859|gb|AEG87076.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 02DC15]: H-rich region from 136 to 151 corrected with score 41
>CPSI-02D-01-000914 	gi|334693856|gb|AEG87073.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 4 to 262 corrected with score 192
>CPSI-02D-01-000914 	gi|334693856|gb|AEG87073.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: P-rich region from 162 to 182 corrected with score 53
>CPSI-02D-01-000934 	gi|334693836|gb|AEG87053.1| ribosome recycling factor [Chlamydophila psittaci 02DC15]: K-rich region from 113 to 174 corrected with score 41
>CPSI-02D-01-000937 	gi|334693833|gb|AEG87050.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 02DC15]: K-rich region from 18 to 218 corrected with score 61
>CPSI-02D-01-000940 	gi|334693830|gb|AEG87047.1| outer protein E [Chlamydophila psittaci 02DC15]: Q-rich region from 251 to 281 corrected with score 61
>CPSI-02D-01-000940 	gi|334693830|gb|AEG87047.1| outer protein E [Chlamydophila psittaci 02DC15]: E-rich region from 21 to 89 corrected with score 57
>CPSI-02D-01-000941 	gi|334693829|gb|AEG87046.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 13 to 170 corrected with score 92
>CPSI-02D-01-000943 	gi|334693827|gb|AEG87044.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 72 to 149 corrected with score 41
>CPSI-02D-01-000947 	gi|334693823|gb|AEG87040.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 123 to 324 corrected with score 171
>CPSI-02D-01-000947 	gi|334693823|gb|AEG87040.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 113 to 261 corrected with score 46
>CPSI-02D-01-000951 	gi|334693819|gb|AEG87036.1| DNA topoisomerase IV subunit B [Chlamydophila psittaci 02DC15]: K-rich region from 322 to 381 corrected with score 47
>CPSI-02D-01-000962 	gi|334693808|gb|AEG87025.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: Q-rich region from 812 to 841 corrected with score 46
>CPSI-02D-01-000962 	gi|334693808|gb|AEG87025.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: E-rich region from 167 to 216 corrected with score 44
>CPSI-02D-01-000963 	gi|334693807|gb|AEG87024.1| conserved hypothetical protein [Chlamydophila psittaci 02DC15]: S-rich region from 9 to 579 corrected with score 113
>CPSI-08D-01-000000 	gi|334695744|gb|AEG88960.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: H-rich region from 274 to 279 corrected with score 40
>CPSI-08D-01-000008 	gi|334695736|gb|AEG88952.1| 30S ribosomal protein S20 [Chlamydophila psittaci 08DC60]: K-rich region from 4 to 45 corrected with score 44
>CPSI-08D-01-000009 	gi|334695735|gb|AEG88951.1| putative inner membrane protein [Chlamydophila psittaci 08DC60]: Q-rich region from 92 to 245 corrected with score 54
>CPSI-08D-01-000022 	gi|334695722|gb|AEG88938.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila psittaci 08DC60]: K-rich region from 743 to 783 corrected with score 60
>CPSI-08D-01-000022 	gi|334695722|gb|AEG88938.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila psittaci 08DC60]: T-rich region from 729 to 781 corrected with score 46
>CPSI-08D-01-000036 	gi|334695708|gb|AEG88924.1| putative exported TonB protein [Chlamydophila psittaci 08DC60]: K-rich region from 62 to 127 corrected with score 51
>CPSI-08D-01-000045 	gi|334695699|gb|AEG88915.1| putative membrane protein [Chlamydophila psittaci 08DC60]: V-rich region from 33 to 76 corrected with score 55
>CPSI-08D-01-000056 	gi|334695688|gb|AEG88904.1| outer protein D1 [Chlamydophila psittaci 08DC60]: A-rich region from 14 to 389 corrected with score 184
>CPSI-08D-01-000056 	gi|334695688|gb|AEG88904.1| outer protein D1 [Chlamydophila psittaci 08DC60]: S-rich region from 55 to 95 corrected with score 62
>CPSI-08D-01-000056 	gi|334695688|gb|AEG88904.1| outer protein D1 [Chlamydophila psittaci 08DC60]: Q-rich region from 376 to 433 corrected with score 56
>CPSI-08D-01-000057 	gi|334695687|gb|AEG88903.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: A-rich region from 33 to 325 corrected with score 148
>CPSI-08D-01-000058 	gi|334695686|gb|AEG88902.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: T-rich region from 8 to 34 corrected with score 41
>CPSI-08D-01-000059 	gi|334695685|gb|AEG88901.1| type III secretion chaperone low calcium response protein [Chlamydophila psittaci 08DC60]: K-rich region from 178 to 227 corrected with score 48
>CPSI-08D-01-000070 	gi|334695674|gb|AEG88890.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: L-rich region from 105 to 134 corrected with score 43
>CPSI-08D-01-000071 	gi|334695673|gb|AEG88889.1| putative type III secretion inner membrane protein [Chlamydophila psittaci 08DC60]: M-rich region from 165 to 257 corrected with score 47
>CPSI-08D-01-000073 	gi|334695671|gb|AEG88887.1| type III secretion inner membrane protein SctR [Chlamydophila psittaci 08DC60]: L-rich region from 92 to 120 corrected with score 43
>CPSI-08D-01-000073 	gi|334695671|gb|AEG88887.1| type III secretion inner membrane protein SctR [Chlamydophila psittaci 08DC60]: M-rich region from 248 to 302 corrected with score 42
>CPSI-08D-01-000076 	gi|334695668|gb|AEG88884.1| putative type III secretion system protein [Chlamydophila psittaci 08DC60]: E-rich region from 287 to 328 corrected with score 51
>CPSI-08D-01-000088 	gi|334695656|gb|AEG88872.1| ribosome-associated GTPase [Chlamydophila psittaci 08DC60]: E-rich region from 166 to 210 corrected with score 47
>CPSI-08D-01-000093 	gi|334695651|gb|AEG88867.1| SNF2 family helicase [Chlamydophila psittaci 08DC60]: E-rich region from 103 to 144 corrected with score 43
>CPSI-08D-01-000098 	gi|334695646|gb|AEG88862.1| outer membrane protein ompB [Chlamydophila psittaci 08DC60]: S-rich region from 12 to 140 corrected with score 40
>CPSI-08D-01-000111 	gi|334695633|gb|AEG88849.1| putative cell shape-determining protein [Chlamydophila psittaci 08DC60]: V-rich region from 14 to 29 corrected with score 40
>CPSI-08D-01-000119 	gi|334695625|gb|AEG88841.1| putative lipoprotein [Chlamydophila psittaci 08DC60]: K-rich region from 29 to 91 corrected with score 43
>CPSI-08D-01-000129 	gi|334695615|gb|AEG88831.1| histone H1-like protein HC1 [Chlamydophila psittaci 08DC60]: K-rich region from 4 to 123 corrected with score 110
>CPSI-08D-01-000129 	gi|334695615|gb|AEG88831.1| histone H1-like protein HC1 [Chlamydophila psittaci 08DC60]: A-rich region from 67 to 120 corrected with score 49
>CPSI-08D-01-000145 	gi|334695599|gb|AEG88815.1| lysM domain protein [Chlamydophila psittaci 08DC60]: P-rich region from 94 to 116 corrected with score 44
>CPSI-08D-01-000155 	gi|334695589|gb|AEG88805.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: Q-rich region from 379 to 552 corrected with score 42
>CPSI-08D-01-000174 	gi|334695570|gb|AEG88786.1| 30S ribosomal protein S14 [Chlamydophila psittaci 08DC60]: K-rich region from 3 to 53 corrected with score 48
>CPSI-08D-01-000176 	gi|334695568|gb|AEG88784.1| excinuclease ABC subunit C [Chlamydophila psittaci 08DC60]: S-rich region from 591 to 627 corrected with score 68
>CPSI-08D-01-000200 	gi|334695544|gb|AEG88760.1| polymorphic outer membrane protein D family [Chlamydophila psittaci 08DC60]: S-rich region from 177 to 862 corrected with score 104
>CPSI-08D-01-000203 	gi|334695541|gb|AEG88757.1| conserved membrane protein [Chlamydophila psittaci 08DC60]: L-rich region from 59 to 93 corrected with score 41
>CPSI-08D-01-000204 	gi|334695540|gb|AEG88756.1| putative TMH-family membrane protein [Chlamydophila psittaci 08DC60]: V-rich region from 27 to 76 corrected with score 41
>CPSI-08D-01-000205 	gi|334695539|gb|AEG88755.1| putative TMH-family membrane protein [Chlamydophila psittaci 08DC60]: Q-rich region from 85 to 290 corrected with score 99
>CPSI-08D-01-000206 	gi|334695538|gb|AEG88754.1| putative TMH-family membrane protein [Chlamydophila psittaci 08DC60]: E-rich region from 139 to 810 corrected with score 137
>CPSI-08D-01-000206 	gi|334695538|gb|AEG88754.1| putative TMH-family membrane protein [Chlamydophila psittaci 08DC60]: I-rich region from 4 to 91 corrected with score 44
>CPSI-08D-01-000208 	gi|334695536|gb|AEG88752.1| putative TMH-family membrane protein [Chlamydophila psittaci 08DC60]: E-rich region from 100 to 458 corrected with score 48
>CPSI-08D-01-000209 	gi|334695535|gb|AEG88751.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: E-rich region from 86 to 234 corrected with score 77
>CPSI-08D-01-000209 	gi|334695535|gb|AEG88751.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: I-rich region from 28 to 75 corrected with score 49
>CPSI-08D-01-000210 	gi|334695534|gb|AEG88750.1| putative TMH-family membrane protein [Chlamydophila psittaci 08DC60]: Q-rich region from 105 to 289 corrected with score 73
>CPSI-08D-01-000210 	gi|334695534|gb|AEG88750.1| putative TMH-family membrane protein [Chlamydophila psittaci 08DC60]: I-rich region from 27 to 78 corrected with score 51
>CPSI-08D-01-000211 	gi|334695533|gb|AEG88749.1| putative TMH-family membrane protein [Chlamydophila psittaci 08DC60]: I-rich region from 27 to 74 corrected with score 46
>CPSI-08D-01-000236 	gi|334695508|gb|AEG88724.1| calcium binding EF-hand protein precursor [Chlamydophila psittaci 08DC60]: E-rich region from 126 to 175 corrected with score 66
>CPSI-08D-01-000246 	gi|334695498|gb|AEG88714.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: Q-rich region from 87 to 138 corrected with score 52
>CPSI-08D-01-000248 	gi|334695496|gb|AEG88712.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: Q-rich region from 49 to 125 corrected with score 47
>CPSI-08D-01-000262 	gi|334695482|gb|AEG88698.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 2 to 223 corrected with score 103
>CPSI-08D-01-000262 	gi|334695482|gb|AEG88698.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: E-rich region from 232 to 277 corrected with score 56
>CPSI-08D-01-000263 	gi|334695481|gb|AEG88697.1| conserved membrane protein [Chlamydophila psittaci 08DC60]: S-rich region from 21 to 243 corrected with score 48
>CPSI-08D-01-000265 	gi|334695479|gb|AEG88695.1| hypothetical protein CPS0D_0800 [Chlamydophila psittaci 08DC60]: Q-rich region from 111 to 314 corrected with score 111
>CPSI-08D-01-000265 	gi|334695479|gb|AEG88695.1| hypothetical protein CPS0D_0800 [Chlamydophila psittaci 08DC60]: S-rich region from 7 to 235 corrected with score 79
>CPSI-08D-01-000266 	gi|334695478|gb|AEG88694.1| lipoprotein [Chlamydophila psittaci 08DC60]: Y-rich region from 52 to 71 corrected with score 50
>CPSI-08D-01-000271 	gi|334695473|gb|AEG88689.1| putative transmembrane protein [Chlamydophila psittaci 08DC60]: L-rich region from 100 to 170 corrected with score 42
>CPSI-08D-01-000297 	gi|334695447|gb|AEG88663.1| putative transmembrane protein [Chlamydophila psittaci 08DC60]: I-rich region from 31 to 79 corrected with score 47
>CPSI-08D-01-000298 	gi|334695446|gb|AEG88662.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: P-rich region from 418 to 506 corrected with score 44
>CPSI-08D-01-000309 	gi|334695435|gb|AEG88651.1| ribosomal protein L7/L12 [Chlamydophila psittaci 08DC60]: A-rich region from 34 to 71 corrected with score 49
>CPSI-08D-01-000314 	gi|334695430|gb|AEG88646.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 12 to 81 corrected with score 52
>CPSI-08D-01-000339 	gi|334695405|gb|AEG88621.1| signal peptidase I [Chlamydophila psittaci 08DC60]: Q-rich region from 22 to 64 corrected with score 41
>CPSI-08D-01-000355 	gi|334695389|gb|AEG88605.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: V-rich region from 34 to 79 corrected with score 40
>CPSI-08D-01-000372 	gi|334695372|gb|AEG88588.1| chaperone protease clpB [Chlamydophila psittaci 08DC60]: E-rich region from 412 to 534 corrected with score 68
>CPSI-08D-01-000378 	gi|334695366|gb|AEG88582.1| putative serine/threonine protein kinase [Chlamydophila psittaci 08DC60]: E-rich region from 284 to 378 corrected with score 46
>CPSI-08D-01-000380 	gi|334695364|gb|AEG88580.1| putative transmembrane protein [Chlamydophila psittaci 08DC60]: I-rich region from 69 to 103 corrected with score 45
>CPSI-08D-01-000380 	gi|334695364|gb|AEG88580.1| putative transmembrane protein [Chlamydophila psittaci 08DC60]: Q-rich region from 1033 to 1102 corrected with score 40
>CPSI-08D-01-000403 	gi|334695341|gb|AEG88557.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: E-rich region from 185 to 223 corrected with score 52
>CPSI-08D-01-000403 	gi|334695341|gb|AEG88557.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: L-rich region from 44 to 100 corrected with score 51
>CPSI-08D-01-000415 	gi|334695329|gb|AEG88545.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: I-rich region from 1 to 53 corrected with score 41
>CPSI-08D-01-000421 	gi|334695323|gb|AEG88539.1| MAC/Perforin domain protein [Chlamydophila psittaci 08DC60]: S-rich region from 530 to 563 corrected with score 44
>CPSI-08D-01-000423 	gi|334695321|gb|AEG88537.1| adherence factor [Chlamydophila psittaci 08DC60]: S-rich region from 8 to 192 corrected with score 75
>CPSI-08D-01-000423 	gi|334695321|gb|AEG88537.1| adherence factor [Chlamydophila psittaci 08DC60]: A-rich region from 1941 to 2047 corrected with score 62
>CPSI-08D-01-000424 	gi|334695320|gb|AEG88536.1| adherence factor [Chlamydophila psittaci 08DC60]: I-rich region from 62 to 100 corrected with score 40
>CPSI-08D-01-000436 	gi|334695308|gb|AEG88524.1| inclusion membrane protein A [Chlamydophila psittaci 08DC60]: V-rich region from 46 to 117 corrected with score 60
>CPSI-08D-01-000448 	gi|334695296|gb|AEG88512.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: A-rich region from 132 to 208 corrected with score 56
>CPSI-08D-01-000453 	gi|334695291|gb|AEG88507.1| 30S ribosomal protein S9 [Chlamydophila psittaci 08DC60]: K-rich region from 92 to 133 corrected with score 46
>CPSI-08D-01-000457 	gi|334695287|gb|AEG88503.1| ABC transporter, permease protein [Chlamydophila psittaci 08DC60]: I-rich region from 360 to 385 corrected with score 40
>CPSI-08D-01-000460 	gi|334695284|gb|AEG88500.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: N-rich region from 41 to 89 corrected with score 41
>CPSI-08D-01-000470 	gi|334695274|gb|AEG88490.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 222 to 368 corrected with score 45
>CPSI-08D-01-000470 	gi|334695274|gb|AEG88490.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: V-rich region from 37 to 90 corrected with score 41
>CPSI-08D-01-000471 	gi|334695273|gb|AEG88489.1| putative inner membrane protein [Chlamydophila psittaci 08DC60]: S-rich region from 129 to 372 corrected with score 72
>CPSI-08D-01-000471 	gi|334695273|gb|AEG88489.1| putative inner membrane protein [Chlamydophila psittaci 08DC60]: E-rich region from 343 to 371 corrected with score 52
>CPSI-08D-01-000471 	gi|334695273|gb|AEG88489.1| putative inner membrane protein [Chlamydophila psittaci 08DC60]: Q-rich region from 106 to 239 corrected with score 51
>CPSI-08D-01-000480 	gi|334695264|gb|AEG88480.1| hypothetical protein CPS0D_0552 [Chlamydophila psittaci 08DC60]: I-rich region from 100 to 139 corrected with score 51
>CPSI-08D-01-000484 	gi|334695260|gb|AEG88476.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 145 to 241 corrected with score 52
>CPSI-08D-01-000486 	gi|334695258|gb|AEG88474.1| putative amino acid permease [Chlamydophila psittaci 08DC60]: W-rich region from 81 to 98 corrected with score 40
>CPSI-08D-01-000487 	gi|334695257|gb|AEG88473.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: I-rich region from 1 to 51 corrected with score 53
>CPSI-08D-01-000490 	gi|334695254|gb|AEG88470.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: V-rich region from 56 to 101 corrected with score 54
>CPSI-08D-01-000493 	gi|334695251|gb|AEG88467.1| inclusion membrane protein B [Chlamydophila psittaci 08DC60]: I-rich region from 119 to 186 corrected with score 44
>CPSI-08D-01-000494 	gi|334695250|gb|AEG88466.1| inclusion membrane protein C [Chlamydophila psittaci 08DC60]: V-rich region from 110 to 169 corrected with score 52
>CPSI-08D-01-000503 	gi|334695241|gb|AEG88457.1| putative ompH-like outer membrane protein [Chlamydophila psittaci 08DC60]: E-rich region from 42 to 106 corrected with score 51
>CPSI-08D-01-000519 	gi|334695225|gb|AEG88441.1| translation initiation factor IF-2 [Chlamydophila psittaci 08DC60]: P-rich region from 106 to 157 corrected with score 60
>CPSI-08D-01-000519 	gi|334695225|gb|AEG88441.1| translation initiation factor IF-2 [Chlamydophila psittaci 08DC60]: K-rich region from 180 to 279 corrected with score 59
>CPSI-08D-01-000519 	gi|334695225|gb|AEG88441.1| translation initiation factor IF-2 [Chlamydophila psittaci 08DC60]: S-rich region from 22 to 105 corrected with score 51
>CPSI-08D-01-000524 	gi|334695220|gb|AEG88436.1| type III secretion system protein [Chlamydophila psittaci 08DC60]: V-rich region from 134 to 204 corrected with score 41
>CPSI-08D-01-000525 	gi|334695219|gb|AEG88435.1| putative membrane transport protein [Chlamydophila psittaci 08DC60]: L-rich region from 8 to 72 corrected with score 54
>CPSI-08D-01-000526 	gi|334695218|gb|AEG88434.1| secretion and cellular translocation protein W [Chlamydophila psittaci 08DC60]: E-rich region from 27 to 126 corrected with score 44
>CPSI-08D-01-000526 	gi|334695218|gb|AEG88434.1| secretion and cellular translocation protein W [Chlamydophila psittaci 08DC60]: A-rich region from 2 to 36 corrected with score 43
>CPSI-08D-01-000532 	gi|334695212|gb|AEG88428.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: K-rich region from 51 to 71 corrected with score 40
>CPSI-08D-01-000533 	gi|334695211|gb|AEG88427.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 4 to 403 corrected with score 136
>CPSI-08D-01-000534 	gi|334695210|gb|AEG88426.1| late transcription unit B protein [Chlamydophila psittaci 08DC60]: K-rich region from 6 to 41 corrected with score 43
>CPSI-08D-01-000550 	gi|334695194|gb|AEG88410.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: I-rich region from 32 to 82 corrected with score 52
>CPSI-08D-01-000551 	gi|334695193|gb|AEG88409.1| GTP-binding protein [Chlamydophila psittaci 08DC60]: K-rich region from 567 to 587 corrected with score 41
>CPSI-08D-01-000556 	gi|334695188|gb|AEG88404.1| type III secretion system protein [Chlamydophila psittaci 08DC60]: L-rich region from 1 to 74 corrected with score 42
>CPSI-08D-01-000558 	gi|334695186|gb|AEG88402.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: P-rich region from 119 to 206 corrected with score 96
>CPSI-08D-01-000558 	gi|334695186|gb|AEG88402.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: A-rich region from 32 to 75 corrected with score 42
>CPSI-08D-01-000559 	gi|334695185|gb|AEG88401.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: I-rich region from 26 to 77 corrected with score 42
>CPSI-08D-01-000565 	gi|334695179|gb|AEG88395.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: E-rich region from 27 to 127 corrected with score 64
>CPSI-08D-01-000567 	gi|334695177|gb|AEG88393.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: P-rich region from 259 to 304 corrected with score 140
>CPSI-08D-01-000567 	gi|334695177|gb|AEG88393.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 36 to 450 corrected with score 94
>CPSI-08D-01-000568 	gi|334695176|gb|AEG88392.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: P-rich region from 351 to 367 corrected with score 62
>CPSI-08D-01-000568 	gi|334695176|gb|AEG88392.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: N-rich region from 2 to 36 corrected with score 42
>CPSI-08D-01-000572 	gi|334695172|gb|AEG88388.1| histone histone-like protein HC2 [Chlamydophila psittaci 08DC60]: K-rich region from 5 to 148 corrected with score 153
>CPSI-08D-01-000572 	gi|334695172|gb|AEG88388.1| histone histone-like protein HC2 [Chlamydophila psittaci 08DC60]: T-rich region from 9 to 137 corrected with score 85
>CPSI-08D-01-000572 	gi|334695172|gb|AEG88388.1| histone histone-like protein HC2 [Chlamydophila psittaci 08DC60]: A-rich region from 13 to 184 corrected with score 42
>CPSI-08D-01-000576 	gi|334695168|gb|AEG88384.1| putative glycosyl hydrolase [Chlamydophila psittaci 08DC60]: N-rich region from 449 to 480 corrected with score 41
>CPSI-08D-01-000586 	gi|334695158|gb|AEG88374.1| hypothetical protein CPS0D_0437 [Chlamydophila psittaci 08DC60]: V-rich region from 35 to 83 corrected with score 46
>CPSI-08D-01-000587 	gi|334695157|gb|AEG88373.1| hypothetical protein CPS0D_0435 [Chlamydophila psittaci 08DC60]: T-rich region from 5 to 71 corrected with score 43
>CPSI-08D-01-000594 	gi|334695150|gb|AEG88366.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: Q-rich region from 459 to 593 corrected with score 60
>CPSI-08D-01-000594 	gi|334695150|gb|AEG88366.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: C-rich region from 178 to 197 corrected with score 52
>CPSI-08D-01-000595 	gi|334695149|gb|AEG88365.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 24 to 181 corrected with score 44
>CPSI-08D-01-000613 	gi|334695131|gb|AEG88347.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: D-rich region from 99 to 115 corrected with score 41
>CPSI-08D-01-000628 	gi|334695116|gb|AEG88332.1| ATP-dependent Clp protease ATP-binding subunit [Chlamydophila psittaci 08DC60]: E-rich region from 431 to 497 corrected with score 50
>CPSI-08D-01-000628 	gi|334695116|gb|AEG88332.1| ATP-dependent Clp protease ATP-binding subunit [Chlamydophila psittaci 08DC60]: S-rich region from 153 to 185 corrected with score 48
>CPSI-08D-01-000633 	gi|334695111|gb|AEG88327.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: K-rich region from 47 to 145 corrected with score 84
>CPSI-08D-01-000633 	gi|334695111|gb|AEG88327.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 327 to 425 corrected with score 54
>CPSI-08D-01-000653 	gi|334695091|gb|AEG88307.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: F-rich region from 245 to 273 corrected with score 41
>CPSI-08D-01-000656 	gi|334695088|gb|AEG88304.1| chaperone protein [Chlamydophila psittaci 08DC60]: G-rich region from 67 to 133 corrected with score 66
>CPSI-08D-01-000657 	gi|334695087|gb|AEG88303.1| 30S ribosomal protein S21 [Chlamydophila psittaci 08DC60]: K-rich region from 20 to 58 corrected with score 40
>CPSI-08D-01-000660 	gi|334695084|gb|AEG88300.1| incA family protein [Chlamydophila psittaci 08DC60]: S-rich region from 154 to 203 corrected with score 59
>CPSI-08D-01-000660 	gi|334695084|gb|AEG88300.1| incA family protein [Chlamydophila psittaci 08DC60]: I-rich region from 37 to 88 corrected with score 50
>CPSI-08D-01-000660 	gi|334695084|gb|AEG88300.1| incA family protein [Chlamydophila psittaci 08DC60]: K-rich region from 122 to 167 corrected with score 47
>CPSI-08D-01-000686 	gi|334695058|gb|AEG88274.1| putative inner membrane protein [Chlamydophila psittaci 08DC60]: S-rich region from 238 to 375 corrected with score 46
>CPSI-08D-01-000691 	gi|334695053|gb|AEG88269.1| polymorphic outer membrane protein [Chlamydophila psittaci 08DC60]: S-rich region from 11 to 299 corrected with score 213
>CPSI-08D-01-000691 	gi|334695053|gb|AEG88269.1| polymorphic outer membrane protein [Chlamydophila psittaci 08DC60]: E-rich region from 88 to 199 corrected with score 69
>CPSI-08D-01-000692 	gi|334695052|gb|AEG88268.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: S-rich region from 122 to 539 corrected with score 84
>CPSI-08D-01-000693 	gi|334695051|gb|AEG88267.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: S-rich region from 11 to 291 corrected with score 96
>CPSI-08D-01-000694 	gi|334695050|gb|AEG88266.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: S-rich region from 11 to 475 corrected with score 93
>CPSI-08D-01-000694 	gi|334695050|gb|AEG88266.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: T-rich region from 373 to 480 corrected with score 43
>CPSI-08D-01-000695 	gi|334695049|gb|AEG88265.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: S-rich region from 11 to 472 corrected with score 87
>CPSI-08D-01-000696 	gi|334695048|gb|AEG88264.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: S-rich region from 11 to 481 corrected with score 105
>CPSI-08D-01-000697 	gi|334695047|gb|AEG88263.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: S-rich region from 12 to 243 corrected with score 77
>CPSI-08D-01-000698 	gi|334695046|gb|AEG88262.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: S-rich region from 11 to 520 corrected with score 151
>CPSI-08D-01-000698 	gi|334695046|gb|AEG88262.1| LOW QUALITY PROTEIN: polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: P-rich region from 203 to 215 corrected with score 41
>CPSI-08D-01-000700 	gi|334695044|gb|AEG88260.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: S-rich region from 47 to 682 corrected with score 118
>CPSI-08D-01-000700 	gi|334695044|gb|AEG88260.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: P-rich region from 242 to 251 corrected with score 54
>CPSI-08D-01-000700 	gi|334695044|gb|AEG88260.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: T-rich region from 550 to 598 corrected with score 53
>CPSI-08D-01-000700 	gi|334695044|gb|AEG88260.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 08DC60]: A-rich region from 560 to 586 corrected with score 42
>CPSI-08D-01-000701 	gi|334695043|gb|AEG88259.1| polymorphic outer membrane protein H family [Chlamydophila psittaci 08DC60]: S-rich region from 61 to 604 corrected with score 105
>CPSI-08D-01-000704 	gi|334695040|gb|AEG88256.1| polymorphic outer membrane protein E family [Chlamydophila psittaci 08DC60]: S-rich region from 58 to 375 corrected with score 55
>CPSI-08D-01-000705 	gi|334695039|gb|AEG88255.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: P-rich region from 636 to 650 corrected with score 51
>CPSI-08D-01-000710 	gi|334695034|gb|AEG88250.1| GTP-binding protein [Chlamydophila psittaci 08DC60]: K-rich region from 183 to 225 corrected with score 41
>CPSI-08D-01-000714 	gi|334695030|gb|AEG88246.1| putative membrane protein [Chlamydophila psittaci 08DC60]: P-rich region from 66 to 218 corrected with score 209
>CPSI-08D-01-000724 	gi|334695020|gb|AEG88236.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: K-rich region from 55 to 242 corrected with score 62
>CPSI-08D-01-000733 	gi|334695011|gb|AEG88227.1| molecular chaperone protein DnaK [Chlamydophila psittaci 08DC60]: E-rich region from 493 to 589 corrected with score 68
>CPSI-08D-01-000733 	gi|334695011|gb|AEG88227.1| molecular chaperone protein DnaK [Chlamydophila psittaci 08DC60]: S-rich region from 585 to 645 corrected with score 40
>CPSI-08D-01-000734 	gi|334695010|gb|AEG88226.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci 08DC60]: K-rich region from 652 to 681 corrected with score 43
>CPSI-08D-01-000747 	gi|334694997|gb|AEG88213.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: D-rich region from 304 to 312 corrected with score 44
>CPSI-08D-01-000753 	gi|334694991|gb|AEG88207.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: E-rich region from 25 to 174 corrected with score 60
>CPSI-08D-01-000768 	gi|334694976|gb|AEG88192.1| polymorphic outer membrane protein B family [Chlamydophila psittaci 08DC60]: S-rich region from 21 to 1342 corrected with score 171
>CPSI-08D-01-000768 	gi|334694976|gb|AEG88192.1| polymorphic outer membrane protein B family [Chlamydophila psittaci 08DC60]: P-rich region from 84 to 94 corrected with score 44
>CPSI-08D-01-000773 	gi|334694971|gb|AEG88187.1| putative transport protein [Chlamydophila psittaci 08DC60]: L-rich region from 141 to 237 corrected with score 62
>CPSI-08D-01-000774 	gi|334694970|gb|AEG88186.1| GTPase [Chlamydophila psittaci 08DC60]: G-rich region from 31 to 43 corrected with score 40
>CPSI-08D-01-000803 	gi|334694941|gb|AEG88157.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: T-rich region from 9 to 143 corrected with score 115
>CPSI-08D-01-000803 	gi|334694941|gb|AEG88157.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 614 to 861 corrected with score 67
>CPSI-08D-01-000803 	gi|334694941|gb|AEG88157.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 35 to 145 corrected with score 64
>CPSI-08D-01-000803 	gi|334694941|gb|AEG88157.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: T-rich region from 382 to 436 corrected with score 62
>CPSI-08D-01-000803 	gi|334694941|gb|AEG88157.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: P-rich region from 452 to 463 corrected with score 58
>CPSI-08D-01-000816 	gi|334694928|gb|AEG88144.1| conserved membrane protein [Chlamydophila psittaci 08DC60]: E-rich region from 377 to 715 corrected with score 94
>CPSI-08D-01-000847 	gi|334694897|gb|AEG88113.1| ADP/ATP carrier family protein [Chlamydophila psittaci 08DC60]: I-rich region from 474 to 506 corrected with score 45
>CPSI-08D-01-000855 	gi|334694889|gb|AEG88105.1| hypothetical protein CPS0D_0132 [Chlamydophila psittaci 08DC60]: E-rich region from 65 to 258 corrected with score 57
>CPSI-08D-01-000856 	gi|334694888|gb|AEG88104.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: E-rich region from 109 to 193 corrected with score 59
>CPSI-08D-01-000856 	gi|334694888|gb|AEG88104.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: K-rich region from 135 to 159 corrected with score 52
>CPSI-08D-01-000860 	gi|334694884|gb|AEG88100.1| 30S ribosomal protein S11 [Chlamydophila psittaci 08DC60]: A-rich region from 48 to 112 corrected with score 41
>CPSI-08D-01-000898 	gi|334694846|gb|AEG88062.1| hexose phosphate transport protein [Chlamydophila psittaci 08DC60]: E-rich region from 221 to 252 corrected with score 43
>CPSI-08D-01-000898 	gi|334694846|gb|AEG88062.1| hexose phosphate transport protein [Chlamydophila psittaci 08DC60]: W-rich region from 127 to 139 corrected with score 40
>CPSI-08D-01-000898 	gi|334694846|gb|AEG88062.1| hexose phosphate transport protein [Chlamydophila psittaci 08DC60]: Y-rich region from 27 to 47 corrected with score 40
>CPSI-08D-01-000905 	gi|334694839|gb|AEG88055.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 08DC60]: H-rich region from 136 to 151 corrected with score 41
>CPSI-08D-01-000909 	gi|334694835|gb|AEG88051.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 4 to 263 corrected with score 192
>CPSI-08D-01-000909 	gi|334694835|gb|AEG88051.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: P-rich region from 162 to 182 corrected with score 53
>CPSI-08D-01-000929 	gi|334694815|gb|AEG88031.1| ribosome recycling factor [Chlamydophila psittaci 08DC60]: K-rich region from 113 to 174 corrected with score 41
>CPSI-08D-01-000932 	gi|334694812|gb|AEG88028.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 08DC60]: K-rich region from 18 to 218 corrected with score 61
>CPSI-08D-01-000935 	gi|334694809|gb|AEG88025.1| outer protein E [Chlamydophila psittaci 08DC60]: Q-rich region from 251 to 281 corrected with score 61
>CPSI-08D-01-000935 	gi|334694809|gb|AEG88025.1| outer protein E [Chlamydophila psittaci 08DC60]: E-rich region from 21 to 89 corrected with score 57
>CPSI-08D-01-000936 	gi|334694808|gb|AEG88024.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: E-rich region from 13 to 170 corrected with score 92
>CPSI-08D-01-000938 	gi|334694806|gb|AEG88022.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: E-rich region from 72 to 149 corrected with score 41
>CPSI-08D-01-000942 	gi|334694802|gb|AEG88018.1| FHA domain protein [Chlamydophila psittaci 08DC60]: E-rich region from 123 to 324 corrected with score 171
>CPSI-08D-01-000942 	gi|334694802|gb|AEG88018.1| FHA domain protein [Chlamydophila psittaci 08DC60]: S-rich region from 113 to 261 corrected with score 46
>CPSI-08D-01-000946 	gi|334694798|gb|AEG88014.1| DNA topoisomerase IV subunit B [Chlamydophila psittaci 08DC60]: K-rich region from 322 to 381 corrected with score 47
>CPSI-08D-01-000957 	gi|334694787|gb|AEG88003.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: Q-rich region from 812 to 841 corrected with score 46
>CPSI-08D-01-000957 	gi|334694787|gb|AEG88003.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: E-rich region from 167 to 216 corrected with score 44
>CPSI-08D-01-000958 	gi|334694786|gb|AEG88002.1| conserved hypothetical protein [Chlamydophila psittaci 08DC60]: S-rich region from 9 to 579 corrected with score 113
>CPSI-6BC-01-000022 	gi|332286974|ref|YP_004421875.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: S-rich region from 9 to 579 corrected with score 113
>CPSI-6BC-01-000023 	gi|332286975|ref|YP_004421876.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: Q-rich region from 812 to 841 corrected with score 46
>CPSI-6BC-01-000023 	gi|332286975|ref|YP_004421876.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 167 to 216 corrected with score 44
>CPSI-6BC-01-000034 	gi|332286986|ref|YP_004421887.1| DNA topoisomerase IV subunit B [Chlamydophila psittaci 6BC]: K-rich region from 322 to 381 corrected with score 47
>CPSI-6BC-01-000038 	gi|332286990|ref|YP_004421891.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 123 to 324 corrected with score 171
>CPSI-6BC-01-000038 	gi|332286990|ref|YP_004421891.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: S-rich region from 113 to 261 corrected with score 46
>CPSI-6BC-01-000042 	gi|332286994|ref|YP_004421895.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 72 to 149 corrected with score 41
>CPSI-6BC-01-000044 	gi|332286996|ref|YP_004421897.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 13 to 170 corrected with score 92
>CPSI-6BC-01-000045 	gi|332286997|ref|YP_004421898.1| outer protein E [Chlamydophila psittaci 6BC]: Q-rich region from 251 to 281 corrected with score 61
>CPSI-6BC-01-000045 	gi|332286997|ref|YP_004421898.1| outer protein E [Chlamydophila psittaci 6BC]: E-rich region from 21 to 89 corrected with score 57
>CPSI-6BC-01-000048 	gi|332287000|ref|YP_004421901.1| bacterial type II/III secretion system protein [Chlamydophila psittaci 6BC]: K-rich region from 18 to 218 corrected with score 61
>CPSI-6BC-01-000051 	gi|332287003|ref|YP_004421904.1| ribosome recycling factor [Chlamydophila psittaci 6BC]: K-rich region from 113 to 174 corrected with score 41
>CPSI-6BC-01-000071 	gi|332287023|ref|YP_004421924.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: S-rich region from 4 to 263 corrected with score 192
>CPSI-6BC-01-000071 	gi|332287023|ref|YP_004421924.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: P-rich region from 162 to 182 corrected with score 53
>CPSI-6BC-01-000075 	gi|332287027|ref|YP_004421928.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]: H-rich region from 136 to 151 corrected with score 41
>CPSI-6BC-01-000082 	gi|332287034|ref|YP_004421935.1| hexose phosphate transport protein [Chlamydophila psittaci 6BC]: E-rich region from 166 to 197 corrected with score 43
>CPSI-6BC-01-000082 	gi|332287034|ref|YP_004421935.1| hexose phosphate transport protein [Chlamydophila psittaci 6BC]: W-rich region from 72 to 84 corrected with score 40
>CPSI-6BC-01-000120 	gi|332287072|ref|YP_004421973.1| 30S ribosomal protein S11 [Chlamydophila psittaci 6BC]: A-rich region from 48 to 112 corrected with score 41
>CPSI-6BC-01-000124 	gi|332287076|ref|YP_004421977.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 109 to 193 corrected with score 59
>CPSI-6BC-01-000124 	gi|332287076|ref|YP_004421977.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: K-rich region from 135 to 159 corrected with score 52
>CPSI-6BC-01-000125 	gi|332287077|ref|YP_004421978.1| hypothetical protein CPSIT_0132 [Chlamydophila psittaci 6BC]: E-rich region from 18 to 211 corrected with score 57
>CPSI-6BC-01-000133 	gi|332287085|ref|YP_004421986.1| ADP/ATP carrier family protein [Chlamydophila psittaci 6BC]: I-rich region from 474 to 506 corrected with score 45
>CPSI-6BC-01-000161 	gi|332287113|ref|YP_004422014.1| conserved membrane protein [Chlamydophila psittaci 6BC]: E-rich region from 377 to 715 corrected with score 94
>CPSI-6BC-01-000173 	gi|332287125|ref|YP_004422026.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: T-rich region from 9 to 143 corrected with score 115
>CPSI-6BC-01-000173 	gi|332287125|ref|YP_004422026.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: S-rich region from 614 to 861 corrected with score 67
>CPSI-6BC-01-000173 	gi|332287125|ref|YP_004422026.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: S-rich region from 35 to 145 corrected with score 64
>CPSI-6BC-01-000173 	gi|332287125|ref|YP_004422026.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: T-rich region from 382 to 436 corrected with score 62
>CPSI-6BC-01-000173 	gi|332287125|ref|YP_004422026.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: P-rich region from 452 to 463 corrected with score 58
>CPSI-6BC-01-000201 	gi|332287153|ref|YP_004422054.1| GTPase [Chlamydophila psittaci 6BC]: G-rich region from 31 to 43 corrected with score 40
>CPSI-6BC-01-000206 	gi|332287158|ref|YP_004422059.1| polymorphic outer membrane protein B family [Chlamydophila psittaci 6BC]: S-rich region from 21 to 1342 corrected with score 171
>CPSI-6BC-01-000206 	gi|332287158|ref|YP_004422059.1| polymorphic outer membrane protein B family [Chlamydophila psittaci 6BC]: P-rich region from 84 to 94 corrected with score 44
>CPSI-6BC-01-000221 	gi|332287173|ref|YP_004422074.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 25 to 174 corrected with score 60
>CPSI-6BC-01-000227 	gi|332287179|ref|YP_004422080.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: D-rich region from 304 to 312 corrected with score 44
>CPSI-6BC-01-000240 	gi|332287192|ref|YP_004422093.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci 6BC]: K-rich region from 652 to 681 corrected with score 43
>CPSI-6BC-01-000241 	gi|332287193|ref|YP_004422094.1| molecular chaperone protein DnaK [Chlamydophila psittaci 6BC]: E-rich region from 493 to 589 corrected with score 68
>CPSI-6BC-01-000241 	gi|332287193|ref|YP_004422094.1| molecular chaperone protein DnaK [Chlamydophila psittaci 6BC]: S-rich region from 585 to 645 corrected with score 40
>CPSI-6BC-01-000250 	gi|332287202|ref|YP_004422103.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: K-rich region from 55 to 242 corrected with score 62
>CPSI-6BC-01-000260 	gi|332287212|ref|YP_004422113.1| putative membrane protein [Chlamydophila psittaci 6BC]: P-rich region from 66 to 278 corrected with score 320
>CPSI-6BC-01-000264 	gi|332287216|ref|YP_004422117.1| GTP-binding protein [Chlamydophila psittaci 6BC]: K-rich region from 183 to 225 corrected with score 41
>CPSI-6BC-01-000269 	gi|332287221|ref|YP_004422122.1| hypothetical protein CPSIT_0296 [Chlamydophila psittaci 6BC]: P-rich region from 636 to 650 corrected with score 51
>CPSI-6BC-01-000270 	gi|332287222|ref|YP_004422123.1| polymorphic outer membrane protein E family [Chlamydophila psittaci 6BC]: S-rich region from 58 to 375 corrected with score 55
>CPSI-6BC-01-000273 	gi|332287225|ref|YP_004422126.1| polymorphic outer membrane protein H family [Chlamydophila psittaci 6BC]: S-rich region from 61 to 604 corrected with score 105
>CPSI-6BC-01-000274 	gi|332287226|ref|YP_004422127.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 47 to 682 corrected with score 118
>CPSI-6BC-01-000274 	gi|332287226|ref|YP_004422127.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: P-rich region from 242 to 251 corrected with score 54
>CPSI-6BC-01-000274 	gi|332287226|ref|YP_004422127.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: T-rich region from 550 to 598 corrected with score 53
>CPSI-6BC-01-000274 	gi|332287226|ref|YP_004422127.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: A-rich region from 560 to 586 corrected with score 42
>CPSI-6BC-01-000275 	gi|332287227|ref|YP_004422128.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 5 to 187 corrected with score 44
>CPSI-6BC-01-000276 	gi|332287228|ref|YP_004422129.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 11 to 520 corrected with score 151
>CPSI-6BC-01-000276 	gi|332287228|ref|YP_004422129.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: P-rich region from 203 to 215 corrected with score 41
>CPSI-6BC-01-000277 	gi|332287229|ref|YP_004422130.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 12 to 243 corrected with score 77
>CPSI-6BC-01-000278 	gi|332287230|ref|YP_004422131.1| polymerase outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 12 to 248 corrected with score 68
>CPSI-6BC-01-000279 	gi|332287231|ref|YP_004422132.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 11 to 481 corrected with score 105
>CPSI-6BC-01-000280 	gi|332287232|ref|YP_004422133.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 11 to 471 corrected with score 87
>CPSI-6BC-01-000281 	gi|332287233|ref|YP_004422134.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 11 to 475 corrected with score 93
>CPSI-6BC-01-000281 	gi|332287233|ref|YP_004422134.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: T-rich region from 373 to 480 corrected with score 43
>CPSI-6BC-01-000282 	gi|332287234|ref|YP_004422135.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 11 to 479 corrected with score 111
>CPSI-6BC-01-000283 	gi|332287235|ref|YP_004422136.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 4 to 263 corrected with score 98
>CPSI-6BC-01-000284 	gi|332287236|ref|YP_004422137.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 4 to 378 corrected with score 66
>CPSI-6BC-01-000285 	gi|332287237|ref|YP_004422138.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 11 to 460 corrected with score 290
>CPSI-6BC-01-000285 	gi|332287237|ref|YP_004422138.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: E-rich region from 88 to 199 corrected with score 69
>CPSI-6BC-01-000290 	gi|332287242|ref|YP_004422143.1| putative inner membrane protein [Chlamydophila psittaci 6BC]: S-rich region from 238 to 375 corrected with score 46
>CPSI-6BC-01-000316 	gi|332287268|ref|YP_004422169.1| hypothetical protein CPSIT_0350 [Chlamydophila psittaci 6BC]: S-rich region from 154 to 203 corrected with score 54
>CPSI-6BC-01-000316 	gi|332287268|ref|YP_004422169.1| hypothetical protein CPSIT_0350 [Chlamydophila psittaci 6BC]: I-rich region from 37 to 88 corrected with score 50
>CPSI-6BC-01-000316 	gi|332287268|ref|YP_004422169.1| hypothetical protein CPSIT_0350 [Chlamydophila psittaci 6BC]: K-rich region from 122 to 167 corrected with score 47
>CPSI-6BC-01-000319 	gi|332287271|ref|YP_004422172.1| 30S ribosomal protein S21 [Chlamydophila psittaci 6BC]: K-rich region from 20 to 58 corrected with score 40
>CPSI-6BC-01-000320 	gi|332287272|ref|YP_004422173.1| chaperone protein [Chlamydophila psittaci 6BC]: G-rich region from 67 to 133 corrected with score 66
>CPSI-6BC-01-000323 	gi|332287275|ref|YP_004422176.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: F-rich region from 245 to 273 corrected with score 41
>CPSI-6BC-01-000343 	gi|332287295|ref|YP_004422196.1| hypothetical protein CPSIT_0379 [Chlamydophila psittaci 6BC]: K-rich region from 47 to 145 corrected with score 88
>CPSI-6BC-01-000343 	gi|332287295|ref|YP_004422196.1| hypothetical protein CPSIT_0379 [Chlamydophila psittaci 6BC]: S-rich region from 327 to 425 corrected with score 54
>CPSI-6BC-01-000348 	gi|332287300|ref|YP_004422201.1| ATP-dependent Clp protease ATP-binding subunit [Chlamydophila psittaci 6BC]: E-rich region from 431 to 497 corrected with score 50
>CPSI-6BC-01-000348 	gi|332287300|ref|YP_004422201.1| ATP-dependent Clp protease ATP-binding subunit [Chlamydophila psittaci 6BC]: S-rich region from 153 to 185 corrected with score 48
>CPSI-6BC-01-000363 	gi|332287315|ref|YP_004422216.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: D-rich region from 99 to 115 corrected with score 41
>CPSI-6BC-01-000381 	gi|332287333|ref|YP_004422234.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: S-rich region from 24 to 181 corrected with score 44
>CPSI-6BC-01-000382 	gi|332287334|ref|YP_004422235.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: Q-rich region from 459 to 593 corrected with score 60
>CPSI-6BC-01-000382 	gi|332287334|ref|YP_004422235.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: C-rich region from 178 to 197 corrected with score 52
>CPSI-6BC-01-000389 	gi|332287341|ref|YP_004422242.1| hypothetical protein CPSIT_0429 [Chlamydophila psittaci 6BC]: V-rich region from 35 to 83 corrected with score 40
>CPSI-6BC-01-000390 	gi|332287342|ref|YP_004422243.1| hypothetical protein CPSIT_0431 [Chlamydophila psittaci 6BC]: V-rich region from 35 to 83 corrected with score 46
>CPSI-6BC-01-000400 	gi|332287352|ref|YP_004422253.1| putative glycosyl hydrolase [Chlamydophila psittaci 6BC]: N-rich region from 449 to 480 corrected with score 41
>CPSI-6BC-01-000404 	gi|332287356|ref|YP_004422257.1| histone histone-like protein HC2 [Chlamydophila psittaci 6BC]: K-rich region from 5 to 148 corrected with score 153
>CPSI-6BC-01-000404 	gi|332287356|ref|YP_004422257.1| histone histone-like protein HC2 [Chlamydophila psittaci 6BC]: T-rich region from 9 to 137 corrected with score 90
>CPSI-6BC-01-000408 	gi|332287360|ref|YP_004422261.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: P-rich region from 315 to 331 corrected with score 62
>CPSI-6BC-01-000409 	gi|332287361|ref|YP_004422262.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: P-rich region from 259 to 304 corrected with score 140
>CPSI-6BC-01-000409 	gi|332287361|ref|YP_004422262.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: S-rich region from 36 to 450 corrected with score 94
>CPSI-6BC-01-000411 	gi|332287363|ref|YP_004422264.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 27 to 127 corrected with score 64
>CPSI-6BC-01-000417 	gi|332287369|ref|YP_004422270.1| hypothetical protein CPSIT_0461 [Chlamydophila psittaci 6BC]: I-rich region from 26 to 77 corrected with score 42
>CPSI-6BC-01-000418 	gi|332287370|ref|YP_004422271.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: P-rich region from 119 to 218 corrected with score 112
>CPSI-6BC-01-000418 	gi|332287370|ref|YP_004422271.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: A-rich region from 32 to 75 corrected with score 42
>CPSI-6BC-01-000420 	gi|332287372|ref|YP_004422273.1| type III secretion system protein [Chlamydophila psittaci 6BC]: L-rich region from 1 to 74 corrected with score 42
>CPSI-6BC-01-000425 	gi|332287377|ref|YP_004422278.1| GTP-binding protein [Chlamydophila psittaci 6BC]: K-rich region from 567 to 587 corrected with score 41
>CPSI-6BC-01-000442 	gi|332287394|ref|YP_004422295.1| late transcription unit B protein [Chlamydophila psittaci 6BC]: K-rich region from 3 to 38 corrected with score 43
>CPSI-6BC-01-000443 	gi|332287395|ref|YP_004422296.1| hypothetical protein CPSIT_0490 [Chlamydophila psittaci 6BC]: S-rich region from 4 to 403 corrected with score 136
>CPSI-6BC-01-000444 	gi|332287396|ref|YP_004422297.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: K-rich region from 51 to 71 corrected with score 40
>CPSI-6BC-01-000450 	gi|332287402|ref|YP_004422303.1| secretion and cellular translocation protein W [Chlamydophila psittaci 6BC]: E-rich region from 27 to 126 corrected with score 44
>CPSI-6BC-01-000450 	gi|332287402|ref|YP_004422303.1| secretion and cellular translocation protein W [Chlamydophila psittaci 6BC]: A-rich region from 2 to 36 corrected with score 43
>CPSI-6BC-01-000451 	gi|332287403|ref|YP_004422304.1| putative membrane transport protein [Chlamydophila psittaci 6BC]: L-rich region from 8 to 72 corrected with score 54
>CPSI-6BC-01-000452 	gi|332287404|ref|YP_004422305.1| type III secretion system protein [Chlamydophila psittaci 6BC]: V-rich region from 134 to 204 corrected with score 41
>CPSI-6BC-01-000457 	gi|332287409|ref|YP_004422310.1| translation initiation factor IF-2 [Chlamydophila psittaci 6BC]: P-rich region from 106 to 157 corrected with score 60
>CPSI-6BC-01-000457 	gi|332287409|ref|YP_004422310.1| translation initiation factor IF-2 [Chlamydophila psittaci 6BC]: K-rich region from 180 to 279 corrected with score 59
>CPSI-6BC-01-000457 	gi|332287409|ref|YP_004422310.1| translation initiation factor IF-2 [Chlamydophila psittaci 6BC]: S-rich region from 22 to 105 corrected with score 51
>CPSI-6BC-01-000473 	gi|332287425|ref|YP_004422326.1| putative ompH-like outer membrane protein [Chlamydophila psittaci 6BC]: E-rich region from 42 to 106 corrected with score 51
>CPSI-6BC-01-000482 	gi|332287434|ref|YP_004422335.1| inclusion membrane protein C [Chlamydophila psittaci 6BC]: V-rich region from 110 to 169 corrected with score 52
>CPSI-6BC-01-000483 	gi|332287435|ref|YP_004422336.1| inclusion membrane protein B [Chlamydophila psittaci 6BC]: I-rich region from 119 to 186 corrected with score 44
>CPSI-6BC-01-000486 	gi|332287438|ref|YP_004422339.1| hypothetical protein CPSIT_0535 [Chlamydophila psittaci 6BC]: V-rich region from 56 to 101 corrected with score 54
>CPSI-6BC-01-000489 	gi|332287441|ref|YP_004422342.1| hypothetical protein CPSIT_0538 [Chlamydophila psittaci 6BC]: I-rich region from 1 to 51 corrected with score 53
>CPSI-6BC-01-000490 	gi|332287442|ref|YP_004422343.1| putative amino acid permease [Chlamydophila psittaci 6BC]: W-rich region from 81 to 98 corrected with score 40
>CPSI-6BC-01-000492 	gi|332287444|ref|YP_004422345.1| hypothetical protein CPSIT_0541 [Chlamydophila psittaci 6BC]: S-rich region from 145 to 241 corrected with score 52
>CPSI-6BC-01-000496 	gi|332287448|ref|YP_004422349.1| hypothetical protein CPSIT_0545 [Chlamydophila psittaci 6BC]: I-rich region from 100 to 139 corrected with score 51
>CPSI-6BC-01-000505 	gi|332287457|ref|YP_004422358.1| putative inner membrane protein [Chlamydophila psittaci 6BC]: S-rich region from 129 to 372 corrected with score 72
>CPSI-6BC-01-000505 	gi|332287457|ref|YP_004422358.1| putative inner membrane protein [Chlamydophila psittaci 6BC]: E-rich region from 343 to 371 corrected with score 52
>CPSI-6BC-01-000505 	gi|332287457|ref|YP_004422358.1| putative inner membrane protein [Chlamydophila psittaci 6BC]: Q-rich region from 106 to 239 corrected with score 51
>CPSI-6BC-01-000506 	gi|332287458|ref|YP_004422359.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: S-rich region from 222 to 368 corrected with score 45
>CPSI-6BC-01-000506 	gi|332287458|ref|YP_004422359.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: V-rich region from 37 to 90 corrected with score 41
>CPSI-6BC-01-000516 	gi|332287468|ref|YP_004422369.1| hypothetical protein CPSIT_0570 [Chlamydophila psittaci 6BC]: N-rich region from 41 to 89 corrected with score 41
>CPSI-6BC-01-000519 	gi|332287471|ref|YP_004422372.1| ABC transporter, permease protein [Chlamydophila psittaci 6BC]: I-rich region from 360 to 385 corrected with score 40
>CPSI-6BC-01-000523 	gi|332287475|ref|YP_004422376.1| 30S ribosomal protein S9 [Chlamydophila psittaci 6BC]: K-rich region from 92 to 133 corrected with score 46
>CPSI-6BC-01-000528 	gi|332287480|ref|YP_004422381.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: A-rich region from 132 to 208 corrected with score 56
>CPSI-6BC-01-000540 	gi|332287492|ref|YP_004422393.1| inclusion membrane protein A [Chlamydophila psittaci 6BC]: V-rich region from 46 to 117 corrected with score 60
>CPSI-6BC-01-000552 	gi|332287504|ref|YP_004422405.1| adherence factor [Chlamydophila psittaci 6BC]: S-rich region from 8 to 192 corrected with score 75
>CPSI-6BC-01-000552 	gi|332287504|ref|YP_004422405.1| adherence factor [Chlamydophila psittaci 6BC]: A-rich region from 1941 to 2047 corrected with score 62
>CPSI-6BC-01-000552 	gi|332287504|ref|YP_004422405.1| adherence factor [Chlamydophila psittaci 6BC]: I-rich region from 3120 to 3158 corrected with score 40
>CPSI-6BC-01-000554 	gi|332287506|ref|YP_004422407.1| MAC/Perforin domain protein [Chlamydophila psittaci 6BC]: S-rich region from 530 to 563 corrected with score 44
>CPSI-6BC-01-000560 	gi|332287512|ref|YP_004422413.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: I-rich region from 1 to 53 corrected with score 41
>CPSI-6BC-01-000572 	gi|332287524|ref|YP_004422425.1| hypothetical protein CPSIT_0628 [Chlamydophila psittaci 6BC]: E-rich region from 185 to 223 corrected with score 52
>CPSI-6BC-01-000572 	gi|332287524|ref|YP_004422425.1| hypothetical protein CPSIT_0628 [Chlamydophila psittaci 6BC]: L-rich region from 44 to 100 corrected with score 51
>CPSI-6BC-01-000595 	gi|332287547|ref|YP_004422448.1| putative transmembrane protein [Chlamydophila psittaci 6BC]: I-rich region from 69 to 103 corrected with score 45
>CPSI-6BC-01-000595 	gi|332287547|ref|YP_004422448.1| putative transmembrane protein [Chlamydophila psittaci 6BC]: Q-rich region from 1033 to 1102 corrected with score 40
>CPSI-6BC-01-000597 	gi|332287549|ref|YP_004422450.1| putative serine/threonine protein kinase [Chlamydophila psittaci 6BC]: E-rich region from 284 to 378 corrected with score 46
>CPSI-6BC-01-000603 	gi|332287555|ref|YP_004422456.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 11 to 456 corrected with score 130
>CPSI-6BC-01-000603 	gi|332287555|ref|YP_004422456.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: T-rich region from 355 to 499 corrected with score 52
>CPSI-6BC-01-000604 	gi|332287556|ref|YP_004422457.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 11 to 473 corrected with score 99
>CPSI-6BC-01-000605 	gi|332287557|ref|YP_004422458.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: S-rich region from 11 to 473 corrected with score 78
>CPSI-6BC-01-000605 	gi|332287557|ref|YP_004422458.1| polymorphic outer membrane protein G family [Chlamydophila psittaci 6BC]: T-rich region from 415 to 509 corrected with score 61
>CPSI-6BC-01-000606 	gi|332287558|ref|YP_004422459.1| chaperone protease clpB [Chlamydophila psittaci 6BC]: E-rich region from 412 to 534 corrected with score 68
>CPSI-6BC-01-000622 	gi|332287574|ref|YP_004422475.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: V-rich region from 34 to 79 corrected with score 40
>CPSI-6BC-01-000638 	gi|332287590|ref|YP_004422491.1| signal peptidase I [Chlamydophila psittaci 6BC]: Q-rich region from 22 to 64 corrected with score 41
>CPSI-6BC-01-000663 	gi|332287615|ref|YP_004422516.1| hypothetical protein CPSIT_0730 [Chlamydophila psittaci 6BC]: S-rich region from 12 to 81 corrected with score 52
>CPSI-6BC-01-000668 	gi|332287620|ref|YP_004422521.1| 50S ribosomal protein L7/L12 [Chlamydophila psittaci 6BC]: A-rich region from 34 to 71 corrected with score 49
>CPSI-6BC-01-000679 	gi|332287631|ref|YP_004422532.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: P-rich region from 418 to 492 corrected with score 42
>CPSI-6BC-01-000680 	gi|332287632|ref|YP_004422533.1| putative transmembrane protein [Chlamydophila psittaci 6BC]: I-rich region from 29 to 77 corrected with score 47
>CPSI-6BC-01-000706 	gi|332287658|ref|YP_004422559.1| putative transmembrane protein [Chlamydophila psittaci 6BC]: L-rich region from 100 to 170 corrected with score 42
>CPSI-6BC-01-000711 	gi|332287663|ref|YP_004422564.1| lipoprotein [Chlamydophila psittaci 6BC]: Y-rich region from 52 to 71 corrected with score 50
>CPSI-6BC-01-000712 	gi|332287664|ref|YP_004422565.1| hypothetical protein CPSIT_0785 [Chlamydophila psittaci 6BC]: Q-rich region from 111 to 314 corrected with score 111
>CPSI-6BC-01-000712 	gi|332287664|ref|YP_004422565.1| hypothetical protein CPSIT_0785 [Chlamydophila psittaci 6BC]: S-rich region from 7 to 235 corrected with score 79
>CPSI-6BC-01-000714 	gi|332287666|ref|YP_004422567.1| conserved membrane protein [Chlamydophila psittaci 6BC]: S-rich region from 21 to 243 corrected with score 48
>CPSI-6BC-01-000715 	gi|332287667|ref|YP_004422568.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: S-rich region from 2 to 223 corrected with score 103
>CPSI-6BC-01-000715 	gi|332287667|ref|YP_004422568.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 232 to 277 corrected with score 56
>CPSI-6BC-01-000726 	gi|332287678|ref|YP_004422579.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 88 to 374 corrected with score 48
>CPSI-6BC-01-000728 	gi|332287680|ref|YP_004422581.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: Q-rich region from 49 to 125 corrected with score 47
>CPSI-6BC-01-000730 	gi|332287682|ref|YP_004422583.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: Q-rich region from 87 to 138 corrected with score 52
>CPSI-6BC-01-000740 	gi|332287692|ref|YP_004422593.1| calcium binding EF-hand protein precursor [Chlamydophila psittaci 6BC]: E-rich region from 126 to 175 corrected with score 66
>CPSI-6BC-01-000743 	gi|332287695|ref|YP_004422596.1| 50S ribosomal protein L35 [Chlamydophila psittaci 6BC]: K-rich region from 3 to 47 corrected with score 43
>CPSI-6BC-01-000765 	gi|332287717|ref|YP_004422618.1| putative TMH-family membrane protein [Chlamydophila psittaci 6BC]: I-rich region from 27 to 74 corrected with score 46
>CPSI-6BC-01-000766 	gi|332287718|ref|YP_004422619.1| putative TMH-family membrane protein [Chlamydophila psittaci 6BC]: Q-rich region from 105 to 289 corrected with score 73
>CPSI-6BC-01-000766 	gi|332287718|ref|YP_004422619.1| putative TMH-family membrane protein [Chlamydophila psittaci 6BC]: I-rich region from 27 to 78 corrected with score 51
>CPSI-6BC-01-000767 	gi|332287719|ref|YP_004422620.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 86 to 234 corrected with score 77
>CPSI-6BC-01-000767 	gi|332287719|ref|YP_004422620.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: I-rich region from 28 to 75 corrected with score 49
>CPSI-6BC-01-000768 	gi|332287720|ref|YP_004422621.1| putative TMH-family membrane protein [Chlamydophila psittaci 6BC]: E-rich region from 101 to 459 corrected with score 48
>CPSI-6BC-01-000770 	gi|332287722|ref|YP_004422623.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: E-rich region from 108 to 779 corrected with score 137
>CPSI-6BC-01-000770 	gi|332287722|ref|YP_004422623.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: I-rich region from 13 to 60 corrected with score 41
>CPSI-6BC-01-000771 	gi|332287723|ref|YP_004422624.1| putative incA family protein [Chlamydophila psittaci 6BC]: Q-rich region from 85 to 290 corrected with score 99
>CPSI-6BC-01-000772 	gi|332287724|ref|YP_004422625.1| putative TMH-family membrane protein [Chlamydophila psittaci 6BC]: V-rich region from 27 to 76 corrected with score 41
>CPSI-6BC-01-000773 	gi|332287725|ref|YP_004422626.1| hypothetical protein CPSIT_0853 [Chlamydophila psittaci 6BC]: L-rich region from 59 to 93 corrected with score 41
>CPSI-6BC-01-000776 	gi|332287728|ref|YP_004422629.1| polymorphic outer membrane protein D family [Chlamydophila psittaci 6BC]: S-rich region from 177 to 862 corrected with score 104
>CPSI-6BC-01-000800 	gi|332287752|ref|YP_004422653.1| excinuclease ABC subunit C [Chlamydophila psittaci 6BC]: S-rich region from 591 to 627 corrected with score 68
>CPSI-6BC-01-000802 	gi|332287754|ref|YP_004422655.1| 30S ribosomal protein S14 [Chlamydophila psittaci 6BC]: K-rich region from 3 to 53 corrected with score 48
>CPSI-6BC-01-000820 	gi|332287772|ref|YP_004422673.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: Q-rich region from 379 to 552 corrected with score 42
>CPSI-6BC-01-000830 	gi|332287782|ref|YP_004422683.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: P-rich region from 94 to 116 corrected with score 44
>CPSI-6BC-01-000846 	gi|332287798|ref|YP_004422699.1| histone H1-like protein HC1 [Chlamydophila psittaci 6BC]: K-rich region from 4 to 123 corrected with score 110
>CPSI-6BC-01-000846 	gi|332287798|ref|YP_004422699.1| histone H1-like protein HC1 [Chlamydophila psittaci 6BC]: A-rich region from 67 to 120 corrected with score 49
>CPSI-6BC-01-000856 	gi|332287808|ref|YP_004422709.1| putative lipoprotein [Chlamydophila psittaci 6BC]: K-rich region from 2 to 45 corrected with score 41
>CPSI-6BC-01-000877 	gi|332287829|ref|YP_004422730.1| outer membrane protein ompB [Chlamydophila psittaci 6BC]: S-rich region from 12 to 140 corrected with score 40
>CPSI-6BC-01-000882 	gi|332287834|ref|YP_004422735.1| SNF2 family helicase [Chlamydophila psittaci 6BC]: E-rich region from 103 to 144 corrected with score 43
>CPSI-6BC-01-000887 	gi|332287839|ref|YP_004422740.1| ribosome-associated GTPase [Chlamydophila psittaci 6BC]: E-rich region from 166 to 210 corrected with score 47
>CPSI-6BC-01-000899 	gi|332287851|ref|YP_004422752.1| putative type III secretion system protein [Chlamydophila psittaci 6BC]: E-rich region from 287 to 328 corrected with score 51
>CPSI-6BC-01-000902 	gi|332287854|ref|YP_004422755.1| secretion and cellular translocation protein R [Chlamydophila psittaci 6BC]: L-rich region from 92 to 120 corrected with score 43
>CPSI-6BC-01-000902 	gi|332287854|ref|YP_004422755.1| secretion and cellular translocation protein R [Chlamydophila psittaci 6BC]: M-rich region from 248 to 302 corrected with score 42
>CPSI-6BC-01-000904 	gi|332287856|ref|YP_004422757.1| putative type III secretion inner membrane protein [Chlamydophila psittaci 6BC]: M-rich region from 165 to 257 corrected with score 47
>CPSI-6BC-01-000905 	gi|332287857|ref|YP_004422758.1| hypothetical protein CPSIT_0997 [Chlamydophila psittaci 6BC]: L-rich region from 105 to 134 corrected with score 43
>CPSI-6BC-01-000916 	gi|332287868|ref|YP_004422769.1| type III secretion chaperone low calcium response protein [Chlamydophila psittaci 6BC]: K-rich region from 178 to 227 corrected with score 48
>CPSI-6BC-01-000917 	gi|332287869|ref|YP_004422770.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: T-rich region from 8 to 34 corrected with score 41
>CPSI-6BC-01-000918 	gi|332287870|ref|YP_004422771.1| hypothetical protein CPSIT_1011 [Chlamydophila psittaci 6BC]: A-rich region from 51 to 361 corrected with score 149
>CPSI-6BC-01-000919 	gi|332287871|ref|YP_004422772.1| outer protein D1 [Chlamydophila psittaci 6BC]: A-rich region from 14 to 389 corrected with score 184
>CPSI-6BC-01-000919 	gi|332287871|ref|YP_004422772.1| outer protein D1 [Chlamydophila psittaci 6BC]: S-rich region from 55 to 95 corrected with score 62
>CPSI-6BC-01-000919 	gi|332287871|ref|YP_004422772.1| outer protein D1 [Chlamydophila psittaci 6BC]: Q-rich region from 376 to 433 corrected with score 56
>CPSI-6BC-01-000938 	gi|332287890|ref|YP_004422791.1| putative exported TonB protein [Chlamydophila psittaci 6BC]: K-rich region from 62 to 127 corrected with score 51
>CPSI-6BC-01-000952 	gi|332287904|ref|YP_004422805.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila psittaci 6BC]: K-rich region from 743 to 783 corrected with score 60
>CPSI-6BC-01-000952 	gi|332287904|ref|YP_004422805.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydophila psittaci 6BC]: T-rich region from 729 to 781 corrected with score 46
>CPSI-6BC-01-000965 	gi|332287917|ref|YP_004422818.1| putative inner membrane protein [Chlamydophila psittaci 6BC]: Q-rich region from 92 to 245 corrected with score 54
>CPSI-6BC-01-000966 	gi|332287918|ref|YP_004422819.1| 30S ribosomal protein S20 [Chlamydophila psittaci 6BC]: K-rich region from 4 to 45 corrected with score 44
>CPSI-6BC-01-000974 	gi|332287926|ref|YP_004422827.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]: H-rich region from 274 to 279 corrected with score 40
>CPSI-CAL-01-000008 	gi|329943350|ref|ZP_08292124.1| putative alternative thymidylate synthase [Chlamydophila psittaci Cal10]: H-rich region from 274 to 279 corrected with score 40
>CPSI-CAL-01-000017 	gi|329943341|ref|ZP_08292115.1| hypothetical protein G5Q_1032 [Chlamydophila psittaci Cal10]: Q-rich region from 92 to 245 corrected with score 54
>CPSI-CAL-01-000030 	gi|329943328|ref|ZP_08292102.1| DNA topoisomerase I [Chlamydophila psittaci Cal10]: K-rich region from 743 to 783 corrected with score 60
>CPSI-CAL-01-000030 	gi|329943328|ref|ZP_08292102.1| DNA topoisomerase I [Chlamydophila psittaci Cal10]: T-rich region from 729 to 781 corrected with score 46
>CPSI-CAL-01-000044 	gi|329943314|ref|ZP_08292088.1| energy transducer [Chlamydophila psittaci Cal10]: K-rich region from 62 to 127 corrected with score 51
>CPSI-CAL-01-000053 	gi|329943305|ref|ZP_08292079.1| putative membrane protein [Chlamydophila psittaci Cal10]: V-rich region from 1 to 43 corrected with score 48
>CPSI-CAL-01-000065 	gi|329943293|ref|ZP_08292067.1| outer protein D1 [Chlamydophila psittaci Cal10]: A-rich region from 14 to 389 corrected with score 184
>CPSI-CAL-01-000065 	gi|329943293|ref|ZP_08292067.1| outer protein D1 [Chlamydophila psittaci Cal10]: S-rich region from 55 to 95 corrected with score 62
>CPSI-CAL-01-000065 	gi|329943293|ref|ZP_08292067.1| outer protein D1 [Chlamydophila psittaci Cal10]: Q-rich region from 376 to 433 corrected with score 56
>CPSI-CAL-01-000066 	gi|329943292|ref|ZP_08292066.1| wall surface anchor family protein [Chlamydophila psittaci Cal10]: A-rich region from 51 to 361 corrected with score 149
>CPSI-CAL-01-000067 	gi|329943291|ref|ZP_08292065.1| hypothetical protein G5Q_0981 [Chlamydophila psittaci Cal10]: T-rich region from 8 to 34 corrected with score 41
>CPSI-CAL-01-000068 	gi|329943290|ref|ZP_08292064.1| type III secretion low calcium response chaperone LcrH/SycD [Chlamydophila psittaci Cal10]: K-rich region from 178 to 227 corrected with score 48
>CPSI-CAL-01-000079 	gi|329943279|ref|ZP_08292053.1| putative inner membrane protein [Chlamydophila psittaci Cal10]: L-rich region from 105 to 134 corrected with score 43
>CPSI-CAL-01-000080 	gi|329943278|ref|ZP_08292052.1| bacterial export s, 1 family protein [Chlamydophila psittaci Cal10]: M-rich region from 165 to 257 corrected with score 47
>CPSI-CAL-01-000082 	gi|329943276|ref|ZP_08292050.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10]: L-rich region from 92 to 120 corrected with score 43
>CPSI-CAL-01-000082 	gi|329943276|ref|ZP_08292050.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10]: M-rich region from 248 to 302 corrected with score 42
>CPSI-CAL-01-000085 	gi|329943273|ref|ZP_08292047.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10]: E-rich region from 287 to 328 corrected with score 51
>CPSI-CAL-01-000098 	gi|329943260|ref|ZP_08292034.1| small GTP-binding domain protein [Chlamydophila psittaci Cal10]: E-rich region from 166 to 210 corrected with score 47
>CPSI-CAL-01-000103 	gi|329943255|ref|ZP_08292029.1| type III restriction enzyme, res subunit [Chlamydophila psittaci Cal10]: E-rich region from 103 to 144 corrected with score 43
>CPSI-CAL-01-000108 	gi|329943250|ref|ZP_08292024.1| outer membrane protein ompB [Chlamydophila psittaci Cal10]: S-rich region from 12 to 140 corrected with score 40
>CPSI-CAL-01-000121 	gi|329943237|ref|ZP_08292011.1| cell cycle family protein [Chlamydophila psittaci Cal10]: V-rich region from 14 to 29 corrected with score 40
>CPSI-CAL-01-000130 	gi|329943228|ref|ZP_08292002.1| hypothetical protein G5Q_0917 [Chlamydophila psittaci Cal10]: K-rich region from 2 to 45 corrected with score 41
>CPSI-CAL-01-000140 	gi|329943218|ref|ZP_08291992.1| histone H1-like Hc1 family protein [Chlamydophila psittaci Cal10]: K-rich region from 4 to 123 corrected with score 110
>CPSI-CAL-01-000140 	gi|329943218|ref|ZP_08291992.1| histone H1-like Hc1 family protein [Chlamydophila psittaci Cal10]: A-rich region from 67 to 120 corrected with score 49
>CPSI-CAL-01-000156 	gi|329943202|ref|ZP_08291976.1| lysM domain protein [Chlamydophila psittaci Cal10]: P-rich region from 94 to 116 corrected with score 44
>CPSI-CAL-01-000167 	gi|329943191|ref|ZP_08291965.1| myosin heavy chain domain protein [Chlamydophila psittaci Cal10]: Q-rich region from 88 to 261 corrected with score 42
>CPSI-CAL-01-000185 	gi|329943173|ref|ZP_08291947.1| 30S ribosomal protein S14 [Chlamydophila psittaci Cal10]: K-rich region from 3 to 53 corrected with score 48
>CPSI-CAL-01-000187 	gi|329943171|ref|ZP_08291945.1| excinuclease ABC, C subunit [Chlamydophila psittaci Cal10]: S-rich region from 591 to 627 corrected with score 68
>CPSI-CAL-01-000212 	gi|329943146|ref|ZP_08291920.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: S-rich region from 177 to 862 corrected with score 104
>CPSI-CAL-01-000215 	gi|329943143|ref|ZP_08291917.1| hypothetical protein G5Q_0824 [Chlamydophila psittaci Cal10]: L-rich region from 59 to 93 corrected with score 41
>CPSI-CAL-01-000217 	gi|329943141|ref|ZP_08291915.1| incA family protein [Chlamydophila psittaci Cal10]: V-rich region from 27 to 76 corrected with score 41
>CPSI-CAL-01-000218 	gi|329943140|ref|ZP_08291914.1| incA family protein [Chlamydophila psittaci Cal10]: Q-rich region from 85 to 290 corrected with score 99
>CPSI-CAL-01-000219 	gi|329943139|ref|ZP_08291913.1| incA family protein [Chlamydophila psittaci Cal10]: E-rich region from 139 to 810 corrected with score 137
>CPSI-CAL-01-000219 	gi|329943139|ref|ZP_08291913.1| incA family protein [Chlamydophila psittaci Cal10]: I-rich region from 4 to 91 corrected with score 44
>CPSI-CAL-01-000221 	gi|329943137|ref|ZP_08291911.1| incA family protein [Chlamydophila psittaci Cal10]: E-rich region from 101 to 459 corrected with score 48
>CPSI-CAL-01-000222 	gi|329943136|ref|ZP_08291910.1| hypothetical protein G5Q_0817 [Chlamydophila psittaci Cal10]: E-rich region from 86 to 234 corrected with score 77
>CPSI-CAL-01-000222 	gi|329943136|ref|ZP_08291910.1| hypothetical protein G5Q_0817 [Chlamydophila psittaci Cal10]: I-rich region from 28 to 75 corrected with score 49
>CPSI-CAL-01-000223 	gi|329943135|ref|ZP_08291909.1| incA family protein [Chlamydophila psittaci Cal10]: Q-rich region from 105 to 289 corrected with score 73
>CPSI-CAL-01-000223 	gi|329943135|ref|ZP_08291909.1| incA family protein [Chlamydophila psittaci Cal10]: I-rich region from 27 to 78 corrected with score 51
>CPSI-CAL-01-000224 	gi|329943134|ref|ZP_08291908.1| incA family protein [Chlamydophila psittaci Cal10]: I-rich region from 27 to 74 corrected with score 46
>CPSI-CAL-01-000248 	gi|329943110|ref|ZP_08291884.1| calcium binding EF-hand protein [Chlamydophila psittaci Cal10]: E-rich region from 126 to 175 corrected with score 66
>CPSI-CAL-01-000258 	gi|329943100|ref|ZP_08291874.1| hypothetical protein G5Q_0779 [Chlamydophila psittaci Cal10]: Q-rich region from 87 to 138 corrected with score 52
>CPSI-CAL-01-000260 	gi|329943098|ref|ZP_08291872.1| hypothetical protein G5Q_0777 [Chlamydophila psittaci Cal10]: Q-rich region from 49 to 125 corrected with score 47
>CPSI-CAL-01-000262 	gi|329943096|ref|ZP_08291870.1| myosin heavy chain [Chlamydophila psittaci Cal10]: E-rich region from 88 to 374 corrected with score 48
>CPSI-CAL-01-000274 	gi|329943084|ref|ZP_08291858.1| hypothetical protein G5Q_0763 [Chlamydophila psittaci Cal10]: S-rich region from 2 to 223 corrected with score 103
>CPSI-CAL-01-000274 	gi|329943084|ref|ZP_08291858.1| hypothetical protein G5Q_0763 [Chlamydophila psittaci Cal10]: E-rich region from 232 to 277 corrected with score 56
>CPSI-CAL-01-000275 	gi|329943083|ref|ZP_08291857.1| conserved membrane protein [Chlamydophila psittaci Cal10]: S-rich region from 21 to 243 corrected with score 48
>CPSI-CAL-01-000277 	gi|329943081|ref|ZP_08291855.1| hypothetical protein G5Q_0760 [Chlamydophila psittaci Cal10]: Q-rich region from 111 to 314 corrected with score 111
>CPSI-CAL-01-000277 	gi|329943081|ref|ZP_08291855.1| hypothetical protein G5Q_0760 [Chlamydophila psittaci Cal10]: S-rich region from 7 to 235 corrected with score 79
>CPSI-CAL-01-000278 	gi|329943080|ref|ZP_08291854.1| lipoprotein [Chlamydophila psittaci Cal10]: Y-rich region from 52 to 71 corrected with score 50
>CPSI-CAL-01-000283 	gi|329943075|ref|ZP_08291849.1| putative membrane protein [Chlamydophila psittaci Cal10]: L-rich region from 100 to 170 corrected with score 42
>CPSI-CAL-01-000309 	gi|329943049|ref|ZP_08291823.1| putative transmembrane protein [Chlamydophila psittaci Cal10]: I-rich region from 29 to 77 corrected with score 47
>CPSI-CAL-01-000310 	gi|329943048|ref|ZP_08291822.1| hypothetical protein G5Q_0726 [Chlamydophila psittaci Cal10]: P-rich region from 418 to 492 corrected with score 42
>CPSI-CAL-01-000321 	gi|329943037|ref|ZP_08291811.1| ribosomal protein L7/L12 [Chlamydophila psittaci Cal10]: A-rich region from 34 to 71 corrected with score 49
>CPSI-CAL-01-000326 	gi|329943032|ref|ZP_08291806.1| hypothetical protein G5Q_0707 [Chlamydophila psittaci Cal10]: S-rich region from 12 to 81 corrected with score 52
>CPSI-CAL-01-000350 	gi|329943008|ref|ZP_08291782.1| signal peptidase I [Chlamydophila psittaci Cal10]: Q-rich region from 22 to 64 corrected with score 41
>CPSI-CAL-01-000366 	gi|329942992|ref|ZP_08291766.1| hypothetical protein G5Q_0667 [Chlamydophila psittaci Cal10]: V-rich region from 34 to 79 corrected with score 40
>CPSI-CAL-01-000383 	gi|329942975|ref|ZP_08291749.1| ATPase associated with various cellular activities family protein [Chlamydophila psittaci Cal10]: E-rich region from 412 to 534 corrected with score 68
>CPSI-CAL-01-000384 	gi|329942974|ref|ZP_08291748.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: T-rich region from 364 to 509 corrected with score 81
>CPSI-CAL-01-000384 	gi|329942974|ref|ZP_08291748.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: S-rich region from 11 to 285 corrected with score 75
>CPSI-CAL-01-000388 	gi|329942965|ref|ZP_08291744.1| chlamydia polymorphic membrane family protein [Chlamydophila psittaci Cal10]: S-rich region from 11 to 268 corrected with score 113
>CPSI-CAL-01-000395 	gi|329942958|ref|ZP_08291737.1| hypothetical protein G5Q_0636 [Chlamydophila psittaci Cal10]: E-rich region from 284 to 378 corrected with score 46
>CPSI-CAL-01-000397 	gi|329942956|ref|ZP_08291735.1| putative transmembrane protein [Chlamydophila psittaci Cal10]: I-rich region from 69 to 103 corrected with score 45
>CPSI-CAL-01-000397 	gi|329942956|ref|ZP_08291735.1| putative transmembrane protein [Chlamydophila psittaci Cal10]: Q-rich region from 1033 to 1102 corrected with score 40
>CPSI-CAL-01-000420 	gi|329942933|ref|ZP_08291712.1| hypothetical protein G5Q_0607 [Chlamydophila psittaci Cal10]: E-rich region from 185 to 223 corrected with score 52
>CPSI-CAL-01-000420 	gi|329942933|ref|ZP_08291712.1| hypothetical protein G5Q_0607 [Chlamydophila psittaci Cal10]: L-rich region from 44 to 100 corrected with score 51
>CPSI-CAL-01-000433 	gi|329942920|ref|ZP_08291699.1| hypothetical protein G5Q_0594 [Chlamydophila psittaci Cal10]: I-rich region from 1 to 53 corrected with score 41
>CPSI-CAL-01-000439 	gi|329942914|ref|ZP_08291693.1| MAC/Perforin domain protein [Chlamydophila psittaci Cal10]: S-rich region from 477 to 510 corrected with score 44
>CPSI-CAL-01-000441 	gi|329942912|ref|ZP_08291691.1| cysteine protease , YopT-type domain protein [Chlamydophila psittaci Cal10]: A-rich region from 1834 to 1940 corrected with score 62
>CPSI-CAL-01-000441 	gi|329942912|ref|ZP_08291691.1| cysteine protease , YopT-type domain protein [Chlamydophila psittaci Cal10]: S-rich region from 3 to 85 corrected with score 44
>CPSI-CAL-01-000442 	gi|329942911|ref|ZP_08291690.1| hypothetical protein G5Q_0585 [Chlamydophila psittaci Cal10]: I-rich region from 24 to 62 corrected with score 40
>CPSI-CAL-01-000454 	gi|329942899|ref|ZP_08291678.1| incA family protein [Chlamydophila psittaci Cal10]: V-rich region from 46 to 117 corrected with score 60
>CPSI-CAL-01-000466 	gi|329942887|ref|ZP_08291666.1| putative inner membrane protein [Chlamydophila psittaci Cal10]: A-rich region from 100 to 176 corrected with score 56
>CPSI-CAL-01-000471 	gi|329942882|ref|ZP_08291661.1| 30S ribosomal protein S9 [Chlamydophila psittaci Cal10]: K-rich region from 92 to 133 corrected with score 46
>CPSI-CAL-01-000475 	gi|329942878|ref|ZP_08291657.1| permease family protein [Chlamydophila psittaci Cal10]: I-rich region from 360 to 385 corrected with score 40
>CPSI-CAL-01-000478 	gi|329942875|ref|ZP_08291654.1| hypothetical protein G5Q_0549 [Chlamydophila psittaci Cal10]: N-rich region from 41 to 89 corrected with score 41
>CPSI-CAL-01-000488 	gi|329942865|ref|ZP_08291644.1| putative inner membrane protein [Chlamydophila psittaci Cal10]: S-rich region from 222 to 368 corrected with score 45
>CPSI-CAL-01-000488 	gi|329942865|ref|ZP_08291644.1| putative inner membrane protein [Chlamydophila psittaci Cal10]: V-rich region from 37 to 90 corrected with score 41
>CPSI-CAL-01-000489 	gi|329942864|ref|ZP_08291643.1| incA family protein [Chlamydophila psittaci Cal10]: S-rich region from 129 to 372 corrected with score 72
>CPSI-CAL-01-000489 	gi|329942864|ref|ZP_08291643.1| incA family protein [Chlamydophila psittaci Cal10]: E-rich region from 343 to 371 corrected with score 52
>CPSI-CAL-01-000489 	gi|329942864|ref|ZP_08291643.1| incA family protein [Chlamydophila psittaci Cal10]: Q-rich region from 106 to 239 corrected with score 51
>CPSI-CAL-01-000498 	gi|329942855|ref|ZP_08291634.1| putative exported protein [Chlamydophila psittaci Cal10]: I-rich region from 100 to 139 corrected with score 51
>CPSI-CAL-01-000502 	gi|329942851|ref|ZP_08291630.1| putative inner membrane protein [Chlamydophila psittaci Cal10]: S-rich region from 145 to 241 corrected with score 52
>CPSI-CAL-01-000504 	gi|329942849|ref|ZP_08291628.1| amino acid permease family protein [Chlamydophila psittaci Cal10]: W-rich region from 81 to 98 corrected with score 40
>CPSI-CAL-01-000505 	gi|329942848|ref|ZP_08291627.1| putative exported protein [Chlamydophila psittaci Cal10]: I-rich region from 1 to 51 corrected with score 53
>CPSI-CAL-01-000508 	gi|329942845|ref|ZP_08291624.1| putative inner membrane protein [Chlamydophila psittaci Cal10]: V-rich region from 56 to 101 corrected with score 54
>CPSI-CAL-01-000511 	gi|329942842|ref|ZP_08291621.1| inclusion membrane protein B [Chlamydophila psittaci Cal10]: I-rich region from 119 to 186 corrected with score 44
>CPSI-CAL-01-000512 	gi|329942841|ref|ZP_08291620.1| inclusion membrane protein C [Chlamydophila psittaci Cal10]: V-rich region from 110 to 169 corrected with score 52
>CPSI-CAL-01-000521 	gi|329942832|ref|ZP_08291611.1| outer membrane family protein [Chlamydophila psittaci Cal10]: E-rich region from 42 to 106 corrected with score 51
>CPSI-CAL-01-000536 	gi|329942817|ref|ZP_08291596.1| translation initiation factor IF-2 [Chlamydophila psittaci Cal10]: P-rich region from 106 to 157 corrected with score 60
>CPSI-CAL-01-000536 	gi|329942817|ref|ZP_08291596.1| translation initiation factor IF-2 [Chlamydophila psittaci Cal10]: K-rich region from 180 to 279 corrected with score 59
>CPSI-CAL-01-000536 	gi|329942817|ref|ZP_08291596.1| translation initiation factor IF-2 [Chlamydophila psittaci Cal10]: S-rich region from 22 to 105 corrected with score 51
>CPSI-CAL-01-000541 	gi|329942812|ref|ZP_08291591.1| hypothetical protein G5Q_0482 [Chlamydophila psittaci Cal10]: V-rich region from 134 to 204 corrected with score 41
>CPSI-CAL-01-000542 	gi|329942811|ref|ZP_08291590.1| type III secretion , HrcV family protein [Chlamydophila psittaci Cal10]: L-rich region from 8 to 72 corrected with score 54
>CPSI-CAL-01-000543 	gi|329942810|ref|ZP_08291589.1| type III secretion regulator YopN/LcrE/InvE/MxiC [Chlamydophila psittaci Cal10]: E-rich region from 27 to 126 corrected with score 44
>CPSI-CAL-01-000543 	gi|329942810|ref|ZP_08291589.1| type III secretion regulator YopN/LcrE/InvE/MxiC [Chlamydophila psittaci Cal10]: A-rich region from 2 to 36 corrected with score 43
>CPSI-CAL-01-000549 	gi|329942804|ref|ZP_08291583.1| hypothetical protein G5Q_0474 [Chlamydophila psittaci Cal10]: K-rich region from 51 to 71 corrected with score 40
>CPSI-CAL-01-000550 	gi|329942803|ref|ZP_08291582.1| hypothetical protein G5Q_0473 [Chlamydophila psittaci Cal10]: S-rich region from 4 to 403 corrected with score 136
>CPSI-CAL-01-000551 	gi|329942802|ref|ZP_08291581.1| late transcription unit B protein [Chlamydophila psittaci Cal10]: K-rich region from 6 to 41 corrected with score 43
>CPSI-CAL-01-000568 	gi|329942785|ref|ZP_08291564.1| GTP-binding protein LepA [Chlamydophila psittaci Cal10]: K-rich region from 567 to 587 corrected with score 41
>CPSI-CAL-01-000573 	gi|329942780|ref|ZP_08291559.1| FHIPEP family protein [Chlamydophila psittaci Cal10]: L-rich region from 1 to 74 corrected with score 42
>CPSI-CAL-01-000576 	gi|329942777|ref|ZP_08291556.1| ATPase associated with chromosome architecture [Chlamydophila psittaci Cal10]: P-rich region from 119 to 218 corrected with score 112
>CPSI-CAL-01-000576 	gi|329942777|ref|ZP_08291556.1| ATPase associated with chromosome architecture [Chlamydophila psittaci Cal10]: A-rich region from 32 to 75 corrected with score 42
>CPSI-CAL-01-000584 	gi|329942769|ref|ZP_08291548.1| hypothetical protein G5Q_0438 [Chlamydophila psittaci Cal10]: E-rich region from 27 to 127 corrected with score 64
>CPSI-CAL-01-000586 	gi|329942767|ref|ZP_08291546.1| hypothetical protein G5Q_0436 [Chlamydophila psittaci Cal10]: P-rich region from 259 to 304 corrected with score 140
>CPSI-CAL-01-000586 	gi|329942767|ref|ZP_08291546.1| hypothetical protein G5Q_0436 [Chlamydophila psittaci Cal10]: S-rich region from 36 to 450 corrected with score 94
>CPSI-CAL-01-000587 	gi|329942766|ref|ZP_08291545.1| cell wall associated hydrolases domain protein [Chlamydophila psittaci Cal10]: P-rich region from 85 to 101 corrected with score 62
>CPSI-CAL-01-000589 	gi|329942764|ref|ZP_08291543.1| hypothetical protein G5Q_0433 [Chlamydophila psittaci Cal10]: N-rich region from 2 to 36 corrected with score 42
>CPSI-CAL-01-000593 	gi|329942760|ref|ZP_08291539.1| histone H1-like nucleoHC2 family protein [Chlamydophila psittaci Cal10]: K-rich region from 5 to 148 corrected with score 153
>CPSI-CAL-01-000593 	gi|329942760|ref|ZP_08291539.1| histone H1-like nucleoHC2 family protein [Chlamydophila psittaci Cal10]: T-rich region from 9 to 137 corrected with score 90
>CPSI-CAL-01-000598 	gi|329942755|ref|ZP_08291534.1| Alpha amylase family protein [Chlamydophila psittaci Cal10]: N-rich region from 449 to 480 corrected with score 41
>CPSI-CAL-01-000608 	gi|329942745|ref|ZP_08291524.1| hypothetical protein G5Q_0414 [Chlamydophila psittaci Cal10]: V-rich region from 35 to 83 corrected with score 46
>CPSI-CAL-01-000609 	gi|329942744|ref|ZP_08291523.1| hypothetical protein G5Q_0413 [Chlamydophila psittaci Cal10]: V-rich region from 35 to 83 corrected with score 40
>CPSI-CAL-01-000616 	gi|329942737|ref|ZP_08291516.1| hypothetical protein G5Q_0406 [Chlamydophila psittaci Cal10]: Q-rich region from 459 to 593 corrected with score 60
>CPSI-CAL-01-000616 	gi|329942737|ref|ZP_08291516.1| hypothetical protein G5Q_0406 [Chlamydophila psittaci Cal10]: C-rich region from 178 to 197 corrected with score 52
>CPSI-CAL-01-000617 	gi|329942736|ref|ZP_08291515.1| hypothetical protein G5Q_0405 [Chlamydophila psittaci Cal10]: S-rich region from 24 to 181 corrected with score 44
>CPSI-CAL-01-000634 	gi|329942719|ref|ZP_08291498.1| hypothetical protein G5Q_0387 [Chlamydophila psittaci Cal10]: D-rich region from 99 to 115 corrected with score 41
>CPSI-CAL-01-000648 	gi|329942705|ref|ZP_08291484.1| negative regulator of genetic competence clpC/mecB [Chlamydophila psittaci Cal10]: E-rich region from 431 to 497 corrected with score 50
>CPSI-CAL-01-000648 	gi|329942705|ref|ZP_08291484.1| negative regulator of genetic competence clpC/mecB [Chlamydophila psittaci Cal10]: S-rich region from 153 to 185 corrected with score 48
>CPSI-CAL-01-000653 	gi|329942700|ref|ZP_08291479.1| hypothetical protein G5Q_0368 [Chlamydophila psittaci Cal10]: K-rich region from 47 to 145 corrected with score 88
>CPSI-CAL-01-000653 	gi|329942700|ref|ZP_08291479.1| hypothetical protein G5Q_0368 [Chlamydophila psittaci Cal10]: S-rich region from 327 to 425 corrected with score 54
>CPSI-CAL-01-000673 	gi|329942680|ref|ZP_08291459.1| comEC/Rec2-related domain protein [Chlamydophila psittaci Cal10]: F-rich region from 245 to 273 corrected with score 41
>CPSI-CAL-01-000676 	gi|329942677|ref|ZP_08291456.1| chaperone protein DnaJ [Chlamydophila psittaci Cal10]: G-rich region from 67 to 133 corrected with score 66
>CPSI-CAL-01-000677 	gi|329942676|ref|ZP_08291455.1| ribosomal protein S21 [Chlamydophila psittaci Cal10]: K-rich region from 20 to 58 corrected with score 40
>CPSI-CAL-01-000680 	gi|329942673|ref|ZP_08291452.1| incA family protein [Chlamydophila psittaci Cal10]: S-rich region from 154 to 203 corrected with score 54
>CPSI-CAL-01-000680 	gi|329942673|ref|ZP_08291452.1| incA family protein [Chlamydophila psittaci Cal10]: I-rich region from 37 to 88 corrected with score 50
>CPSI-CAL-01-000680 	gi|329942673|ref|ZP_08291452.1| incA family protein [Chlamydophila psittaci Cal10]: K-rich region from 122 to 167 corrected with score 47
>CPSI-CAL-01-000706 	gi|329942647|ref|ZP_08291426.1| putative inner membrane protein [Chlamydophila psittaci Cal10]: S-rich region from 238 to 375 corrected with score 46
>CPSI-CAL-01-000711 	gi|329942642|ref|ZP_08291421.1| nuclear maintenance protein SRP40 [Chlamydophila psittaci Cal10]: S-rich region from 11 to 299 corrected with score 213
>CPSI-CAL-01-000711 	gi|329942642|ref|ZP_08291421.1| nuclear maintenance protein SRP40 [Chlamydophila psittaci Cal10]: E-rich region from 88 to 199 corrected with score 69
>CPSI-CAL-01-000712 	gi|329942641|ref|ZP_08291420.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: S-rich region from 122 to 539 corrected with score 84
>CPSI-CAL-01-000713 	gi|329942640|ref|ZP_08291419.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: S-rich region from 4 to 263 corrected with score 98
>CPSI-CAL-01-000714 	gi|329942639|ref|ZP_08291418.1| chlamydia polymorphic membrane family protein [Chlamydophila psittaci Cal10]: S-rich region from 11 to 277 corrected with score 97
>CPSI-CAL-01-000716 	gi|329942606|ref|ZP_08291416.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: S-rich region from 2 to 462 corrected with score 87
>CPSI-CAL-01-000717 	gi|329942605|ref|ZP_08291415.1| chlamydia polymorphic membrane family protein [Chlamydophila psittaci Cal10]: S-rich region from 11 to 285 corrected with score 83
>CPSI-CAL-01-000719 	gi|329942603|ref|ZP_08291413.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: S-rich region from 12 to 248 corrected with score 68
>CPSI-CAL-01-000720 	gi|329942602|ref|ZP_08291412.1| autotransporter beta-domain protein [Chlamydophila psittaci Cal10]: S-rich region from 12 to 243 corrected with score 76
>CPSI-CAL-01-000721 	gi|329942601|ref|ZP_08291411.1| chlamydia polymorphic membrane family protein [Chlamydophila psittaci Cal10]: S-rich region from 11 to 213 corrected with score 112
>CPSI-CAL-01-000722 	gi|329942600|ref|ZP_08291410.1| autotransporter beta-domain protein [Chlamydophila psittaci Cal10]: S-rich region from 3 to 281 corrected with score 55
>CPSI-CAL-01-000725 	gi|329942597|ref|ZP_08291407.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: S-rich region from 47 to 682 corrected with score 118
>CPSI-CAL-01-000725 	gi|329942597|ref|ZP_08291407.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: P-rich region from 242 to 251 corrected with score 54
>CPSI-CAL-01-000725 	gi|329942597|ref|ZP_08291407.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: T-rich region from 550 to 598 corrected with score 53
>CPSI-CAL-01-000725 	gi|329942597|ref|ZP_08291407.1| outer membrane autotransporter barrel domain protein [Chlamydophila psittaci Cal10]: A-rich region from 560 to 586 corrected with score 42
>CPSI-CAL-01-000726 	gi|329942596|ref|ZP_08291406.1| autotransporter beta-domain protein [Chlamydophila psittaci Cal10]: S-rich region from 61 to 604 corrected with score 105
>CPSI-CAL-01-000729 	gi|329942593|ref|ZP_08291403.1| autotransporter beta-domain protein [Chlamydophila psittaci Cal10]: S-rich region from 58 to 375 corrected with score 55
>CPSI-CAL-01-000730 	gi|329942592|ref|ZP_08291402.1| hypothetical protein G5Q_0289 [Chlamydophila psittaci Cal10]: P-rich region from 636 to 650 corrected with score 51
>CPSI-CAL-01-000736 	gi|329942586|ref|ZP_08291396.1| GTP-binding proten HflX [Chlamydophila psittaci Cal10]: K-rich region from 183 to 225 corrected with score 41
>CPSI-CAL-01-000740 	gi|329942582|ref|ZP_08291392.1| putative membrane protein [Chlamydophila psittaci Cal10]: P-rich region from 66 to 278 corrected with score 320
>CPSI-CAL-01-000751 	gi|329942571|ref|ZP_08291381.1| hypothetical protein G5Q_0268 [Chlamydophila psittaci Cal10]: K-rich region from 55 to 242 corrected with score 62
>CPSI-CAL-01-000760 	gi|329942562|ref|ZP_08291372.1| chaperone protein DnaK [Chlamydophila psittaci Cal10]: E-rich region from 469 to 565 corrected with score 68
>CPSI-CAL-01-000760 	gi|329942562|ref|ZP_08291372.1| chaperone protein DnaK [Chlamydophila psittaci Cal10]: S-rich region from 561 to 621 corrected with score 40
>CPSI-CAL-01-000761 	gi|329942561|ref|ZP_08291371.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydophila psittaci Cal10]: K-rich region from 653 to 682 corrected with score 43
>CPSI-CAL-01-000774 	gi|329942548|ref|ZP_08291358.1| hypothetical protein G5Q_0245 [Chlamydophila psittaci Cal10]: D-rich region from 304 to 312 corrected with score 44
>CPSI-CAL-01-000781 	gi|329942541|ref|ZP_08291351.1| putative zinc ribbon domain protein [Chlamydophila psittaci Cal10]: E-rich region from 25 to 174 corrected with score 60
>CPSI-CAL-01-000796 	gi|329942526|ref|ZP_08291336.1| autotransporter beta-domain protein [Chlamydophila psittaci Cal10]: S-rich region from 21 to 1342 corrected with score 171
>CPSI-CAL-01-000796 	gi|329942526|ref|ZP_08291336.1| autotransporter beta-domain protein [Chlamydophila psittaci Cal10]: P-rich region from 84 to 94 corrected with score 44
>CPSI-CAL-01-000801 	gi|329942521|ref|ZP_08291331.1| ABC transporter, permease protein [Chlamydophila psittaci Cal10]: L-rich region from 141 to 237 corrected with score 62
>CPSI-CAL-01-000802 	gi|329942520|ref|ZP_08291330.1| GTP-binding protein Obg/CgtA [Chlamydophila psittaci Cal10]: G-rich region from 31 to 43 corrected with score 40
>CPSI-CAL-01-000834 	gi|329942488|ref|ZP_08291298.1| hypothetical protein G5Q_0183 [Chlamydophila psittaci Cal10]: T-rich region from 9 to 143 corrected with score 115
>CPSI-CAL-01-000834 	gi|329942488|ref|ZP_08291298.1| hypothetical protein G5Q_0183 [Chlamydophila psittaci Cal10]: S-rich region from 614 to 861 corrected with score 67
>CPSI-CAL-01-000834 	gi|329942488|ref|ZP_08291298.1| hypothetical protein G5Q_0183 [Chlamydophila psittaci Cal10]: S-rich region from 35 to 145 corrected with score 64
>CPSI-CAL-01-000834 	gi|329942488|ref|ZP_08291298.1| hypothetical protein G5Q_0183 [Chlamydophila psittaci Cal10]: T-rich region from 382 to 436 corrected with score 62
>CPSI-CAL-01-000834 	gi|329942488|ref|ZP_08291298.1| hypothetical protein G5Q_0183 [Chlamydophila psittaci Cal10]: P-rich region from 452 to 463 corrected with score 58
>CPSI-CAL-01-000846 	gi|329942476|ref|ZP_08291286.1| inclusion membrane protein [Chlamydophila psittaci Cal10]: E-rich region from 377 to 715 corrected with score 94
>CPSI-CAL-01-000878 	gi|329942444|ref|ZP_08291254.1| ADP/ATP carrier family protein [Chlamydophila psittaci Cal10]: I-rich region from 474 to 506 corrected with score 45
>CPSI-CAL-01-000886 	gi|329942436|ref|ZP_08291246.1| hypothetical protein G5Q_0127 [Chlamydophila psittaci Cal10]: E-rich region from 18 to 211 corrected with score 57
>CPSI-CAL-01-000887 	gi|329942435|ref|ZP_08291245.1| hypothetical protein G5Q_0125 [Chlamydophila psittaci Cal10]: E-rich region from 109 to 193 corrected with score 59
>CPSI-CAL-01-000887 	gi|329942435|ref|ZP_08291245.1| hypothetical protein G5Q_0125 [Chlamydophila psittaci Cal10]: K-rich region from 135 to 159 corrected with score 52
>CPSI-CAL-01-000891 	gi|329942431|ref|ZP_08291241.1| ribosomal S11 family protein [Chlamydophila psittaci Cal10]: A-rich region from 48 to 112 corrected with score 41
>CPSI-CAL-01-000929 	gi|329942393|ref|ZP_08291203.1| uhpC [Chlamydophila psittaci Cal10]: E-rich region from 221 to 252 corrected with score 43
>CPSI-CAL-01-000929 	gi|329942393|ref|ZP_08291203.1| uhpC [Chlamydophila psittaci Cal10]: W-rich region from 127 to 139 corrected with score 40
>CPSI-CAL-01-000929 	gi|329942393|ref|ZP_08291203.1| uhpC [Chlamydophila psittaci Cal10]: Y-rich region from 27 to 47 corrected with score 40
>CPSI-CAL-01-000936 	gi|329942386|ref|ZP_08291196.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila psittaci Cal10]: H-rich region from 136 to 151 corrected with score 41
>CPSI-CAL-01-000941 	gi|329942381|ref|ZP_08291191.1| hypothetical protein G5Q_0070 [Chlamydophila psittaci Cal10]: S-rich region from 4 to 263 corrected with score 192
>CPSI-CAL-01-000941 	gi|329942381|ref|ZP_08291191.1| hypothetical protein G5Q_0070 [Chlamydophila psittaci Cal10]: P-rich region from 162 to 182 corrected with score 53
>CPSI-CAL-01-000960 	gi|329942362|ref|ZP_08291172.1| ribosome recycling factor [Chlamydophila psittaci Cal10]: K-rich region from 113 to 174 corrected with score 41
>CPSI-CAL-01-000964 	gi|329942358|ref|ZP_08291168.1| bacterial type II and III secretion system family protein [Chlamydophila psittaci Cal10]: K-rich region from 18 to 218 corrected with score 61
>CPSI-CAL-01-000967 	gi|329942355|ref|ZP_08291165.1| outer protein E [Chlamydophila psittaci Cal10]: Q-rich region from 251 to 281 corrected with score 61
>CPSI-CAL-01-000967 	gi|329942355|ref|ZP_08291165.1| outer protein E [Chlamydophila psittaci Cal10]: E-rich region from 21 to 89 corrected with score 57
>CPSI-CAL-01-000968 	gi|329942354|ref|ZP_08291164.1| hypothetical protein G5Q_0039 [Chlamydophila psittaci Cal10]: E-rich region from 13 to 170 corrected with score 92
>CPSI-CAL-01-000970 	gi|329942352|ref|ZP_08291162.1| hypothetical protein G5Q_0037 [Chlamydophila psittaci Cal10]: E-rich region from 72 to 149 corrected with score 41
>CPSI-CAL-01-000974 	gi|329942348|ref|ZP_08291158.1| hypothetical protein G5Q_0033 [Chlamydophila psittaci Cal10]: E-rich region from 123 to 324 corrected with score 171
>CPSI-CAL-01-000974 	gi|329942348|ref|ZP_08291158.1| hypothetical protein G5Q_0033 [Chlamydophila psittaci Cal10]: S-rich region from 113 to 261 corrected with score 46
>CPSI-CAL-01-000977 	gi|329942345|ref|ZP_08291155.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Chlamydophila psittaci Cal10]: K-rich region from 322 to 381 corrected with score 47
>CPSI-CAL-01-000988 	gi|329942334|ref|ZP_08291144.1| hypothetical protein G5Q_0018 [Chlamydophila psittaci Cal10]: Q-rich region from 812 to 841 corrected with score 46
>CPSI-CAL-01-000988 	gi|329942334|ref|ZP_08291144.1| hypothetical protein G5Q_0018 [Chlamydophila psittaci Cal10]: E-rich region from 167 to 216 corrected with score 44
>CPSI-CAL-01-000989 	gi|329942333|ref|ZP_08291143.1| wall surface anchor family protein [Chlamydophila psittaci Cal10]: S-rich region from 9 to 579 corrected with score 113
>CTRA-434-01-000002 	gi|166153976|ref|YP_001654094.1| hypothetical protein CTL0003 [Chlamydia trachomatis 434/Bu]: K-rich region from 101 to 140 corrected with score 44
>CTRA-434-01-000009 	gi|166153983|ref|YP_001654101.1| hypothetical protein CTL0010 [Chlamydia trachomatis 434/Bu]: F-rich region from 169 to 204 corrected with score 47
>CTRA-434-01-000010 	gi|166153984|ref|YP_001654102.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis 434/Bu]: K-rich region from 744 to 781 corrected with score 50
>CTRA-434-01-000010 	gi|166153984|ref|YP_001654102.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis 434/Bu]: E-rich region from 437 to 474 corrected with score 49
>CTRA-434-01-000029 	gi|166154003|ref|YP_001654121.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 434/Bu]: K-rich region from 307 to 384 corrected with score 55
>CTRA-434-01-000032 	gi|166154006|ref|YP_001654124.1| phosphopeptide binding protein ( to be a TTSS protein) [Chlamydia trachomatis 434/Bu]: E-rich region from 100 to 344 corrected with score 166
>CTRA-434-01-000032 	gi|166154006|ref|YP_001654124.1| phosphopeptide binding protein ( to be a TTSS protein) [Chlamydia trachomatis 434/Bu]: S-rich region from 109 to 333 corrected with score 107
>CTRA-434-01-000038 	gi|166154012|ref|YP_001654130.1| hypothetical protein CTL0039 [Chlamydia trachomatis 434/Bu]: E-rich region from 13 to 168 corrected with score 107
>CTRA-434-01-000039 	gi|166154013|ref|YP_001654131.1| hypothetical protein CTL0040 [Chlamydia trachomatis 434/Bu]: S-rich region from 37 to 125 corrected with score 49
>CTRA-434-01-000039 	gi|166154013|ref|YP_001654131.1| hypothetical protein CTL0040 [Chlamydia trachomatis 434/Bu]: E-rich region from 252 to 280 corrected with score 42
>CTRA-434-01-000042 	gi|166154016|ref|YP_001654134.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis 434/Bu]: Q-rich region from 127 to 245 corrected with score 61
>CTRA-434-01-000063 	gi|166154037|ref|YP_001654155.1| hypothetical protein CTL0064 [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 77 corrected with score 41
>CTRA-434-01-000075 	gi|166154049|ref|YP_001654167.1| trigger factor [Chlamydia trachomatis 434/Bu]: E-rich region from 255 to 361 corrected with score 47
>CTRA-434-01-000079 	gi|166154053|ref|YP_001654171.1| hypothetical protein CTL0080 [Chlamydia trachomatis 434/Bu]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-434-01-000111 	gi|166154085|ref|YP_001654203.1| histone H1--like developmental protein [Chlamydia trachomatis 434/Bu]: K-rich region from 4 to 125 corrected with score 112
>CTRA-434-01-000118 	gi|166154092|ref|YP_001654210.1| transketolase [Chlamydia trachomatis 434/Bu]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-434-01-000136 	gi|166154110|ref|YP_001654228.1| hypothetical protein CTL0137 [Chlamydia trachomatis 434/Bu]: E-rich region from 313 to 447 corrected with score 43
>CTRA-434-01-000147 	gi|166154121|ref|YP_001654239.1| hypothetical protein CTL0148 [Chlamydia trachomatis 434/Bu]: P-rich region from 43 to 78 corrected with score 45
>CTRA-434-01-000153 	gi|166154127|ref|YP_001654245.1| 50S ribosomal protein L34 [Chlamydia trachomatis 434/Bu]: R-rich region from 2 to 40 corrected with score 41
>CTRA-434-01-000155 	gi|166154129|ref|YP_001654247.1| 30S ribosomal protein S14 [Chlamydia trachomatis 434/Bu]: K-rich region from 3 to 53 corrected with score 40
>CTRA-434-01-000162 	gi|166154136|ref|YP_001654254.1| hypothetical protein CTL0163 [Chlamydia trachomatis 434/Bu]: A-rich region from 20 to 71 corrected with score 46
>CTRA-434-01-000181 	gi|166154155|ref|YP_001654273.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 121 to 671 corrected with score 60
>CTRA-434-01-000182 	gi|166154156|ref|YP_001654274.1| hypothetical protein CTL0184 [Chlamydia trachomatis 434/Bu]: E-rich region from 179 to 254 corrected with score 73
>CTRA-434-01-000189 	gi|166154163|ref|YP_001654281.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]: L-rich region from 141 to 186 corrected with score 50
>CTRA-434-01-000194 	gi|166154168|ref|YP_001654286.1| metalloprotease-insulinase [Chlamydia trachomatis 434/Bu]: E-rich region from 468 to 508 corrected with score 42
>CTRA-434-01-000219 	gi|166154193|ref|YP_001654311.1| hypothetical protein CTL0221 [Chlamydia trachomatis 434/Bu]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-434-01-000221 	gi|166154195|ref|YP_001654313.1| putative integral membrane protein [Chlamydia trachomatis 434/Bu]: E-rich region from 141 to 310 corrected with score 46
>CTRA-434-01-000232 	gi|166154206|ref|YP_001654324.1| hypothetical protein CTL0235 [Chlamydia trachomatis 434/Bu]: S-rich region from 12 to 280 corrected with score 108
>CTRA-434-01-000232 	gi|166154206|ref|YP_001654324.1| hypothetical protein CTL0235 [Chlamydia trachomatis 434/Bu]: E-rich region from 227 to 267 corrected with score 46
>CTRA-434-01-000233 	gi|166154207|ref|YP_001654325.1| putative type III secretion translocator [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 233 corrected with score 103
>CTRA-434-01-000235 	gi|166154209|ref|YP_001654327.1| hypothetical protein CTL0238 [Chlamydia trachomatis 434/Bu]: S-rich region from 8 to 335 corrected with score 119
>CTRA-434-01-000235 	gi|166154209|ref|YP_001654327.1| hypothetical protein CTL0238 [Chlamydia trachomatis 434/Bu]: E-rich region from 235 to 283 corrected with score 51
>CTRA-434-01-000240 	gi|166154214|ref|YP_001654332.1| hypothetical protein CTL0247 [Chlamydia trachomatis 434/Bu]: P-rich region from 74 to 130 corrected with score 108
>CTRA-434-01-000241 	gi|166154215|ref|YP_001654333.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 343 to 600 corrected with score 61
>CTRA-434-01-000242 	gi|166154216|ref|YP_001654334.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: T-rich region from 646 to 722 corrected with score 74
>CTRA-434-01-000242 	gi|166154216|ref|YP_001654334.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 51 to 328 corrected with score 41
>CTRA-434-01-000242 	gi|166154216|ref|YP_001654334.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 659 to 705 corrected with score 41
>CTRA-434-01-000243 	gi|166154217|ref|YP_001654335.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 105 to 614 corrected with score 69
>CTRA-434-01-000244 	gi|166154218|ref|YP_001654336.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 56 to 552 corrected with score 121
>CTRA-434-01-000246 	gi|166154220|ref|YP_001654338.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 107 to 780 corrected with score 120
>CTRA-434-01-000247 	gi|166154221|ref|YP_001654339.1| hypothetical protein CTL0255 [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 140 corrected with score 61
>CTRA-434-01-000252 	gi|166154226|ref|YP_001654344.1| hypothetical protein CTL0260 [Chlamydia trachomatis 434/Bu]: S-rich region from 232 to 361 corrected with score 138
>CTRA-434-01-000293 	gi|166154267|ref|YP_001654385.1| histone-like protein 2 [Chlamydia trachomatis 434/Bu]: K-rich region from 7 to 178 corrected with score 161
>CTRA-434-01-000293 	gi|166154267|ref|YP_001654385.1| histone-like protein 2 [Chlamydia trachomatis 434/Bu]: A-rich region from 14 to 198 corrected with score 128
>CTRA-434-01-000296 	gi|166154270|ref|YP_001654388.1| hypothetical protein CTL0305 [Chlamydia trachomatis 434/Bu]: S-rich region from 273 to 479 corrected with score 78
>CTRA-434-01-000297 	gi|166154271|ref|YP_001654389.1| hypothetical protein CTL0306 [Chlamydia trachomatis 434/Bu]: T-rich region from 162 to 553 corrected with score 187
>CTRA-434-01-000297 	gi|166154271|ref|YP_001654389.1| hypothetical protein CTL0306 [Chlamydia trachomatis 434/Bu]: S-rich region from 366 to 554 corrected with score 60
>CTRA-434-01-000298 	gi|166154272|ref|YP_001654390.1| hypothetical protein CTL0307 [Chlamydia trachomatis 434/Bu]: T-rich region from 212 to 555 corrected with score 154
>CTRA-434-01-000298 	gi|166154272|ref|YP_001654390.1| hypothetical protein CTL0307 [Chlamydia trachomatis 434/Bu]: S-rich region from 403 to 524 corrected with score 50
>CTRA-434-01-000298 	gi|166154272|ref|YP_001654390.1| hypothetical protein CTL0307 [Chlamydia trachomatis 434/Bu]: E-rich region from 113 to 155 corrected with score 40
>CTRA-434-01-000300 	gi|166154274|ref|YP_001654392.1| hypothetical protein CTL0309 [Chlamydia trachomatis 434/Bu]: E-rich region from 27 to 127 corrected with score 51
>CTRA-434-01-000305 	gi|166154279|ref|YP_001654397.1| hypothetical protein CTL0314 [Chlamydia trachomatis 434/Bu]: P-rich region from 78 to 119 corrected with score 67
>CTRA-434-01-000312 	gi|166154286|ref|YP_001654404.1| ADP,ATP carrier protein [Chlamydia trachomatis 434/Bu]: A-rich region from 435 to 523 corrected with score 50
>CTRA-434-01-000317 	gi|166154291|ref|YP_001654409.1| ABC transport protein, membrane permease [Chlamydia trachomatis 434/Bu]: V-rich region from 39 to 304 corrected with score 42
>CTRA-434-01-000329 	gi|166154303|ref|YP_001654421.1| hypothetical protein CTL0338 [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 387 corrected with score 102
>CTRA-434-01-000329 	gi|166154303|ref|YP_001654421.1| hypothetical protein CTL0338 [Chlamydia trachomatis 434/Bu]: D-rich region from 526 to 560 corrected with score 43
>CTRA-434-01-000336 	gi|166154310|ref|YP_001654428.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 233 corrected with score 56
>CTRA-434-01-000336 	gi|166154310|ref|YP_001654428.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis 434/Bu]: P-rich region from 385 to 421 corrected with score 47
>CTRA-434-01-000336 	gi|166154310|ref|YP_001654428.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis 434/Bu]: E-rich region from 28 to 111 corrected with score 44
>CTRA-434-01-000337 	gi|166154311|ref|YP_001654429.1| low calcium response protein D ( to be part of the TTSS apparatus) [Chlamydia trachomatis 434/Bu]: L-rich region from 27 to 91 corrected with score 51
>CTRA-434-01-000343 	gi|166154317|ref|YP_001654435.1| translation initiation factor IF-2 [Chlamydia trachomatis 434/Bu]: S-rich region from 33 to 290 corrected with score 102
>CTRA-434-01-000343 	gi|166154317|ref|YP_001654435.1| translation initiation factor IF-2 [Chlamydia trachomatis 434/Bu]: E-rich region from 123 to 159 corrected with score 44
>CTRA-434-01-000343 	gi|166154317|ref|YP_001654435.1| translation initiation factor IF-2 [Chlamydia trachomatis 434/Bu]: K-rich region from 2 to 57 corrected with score 44
>CTRA-434-01-000352 	gi|166154326|ref|YP_001654444.1| hypothetical protein CTL0360 [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 229 corrected with score 105
>CTRA-434-01-000352 	gi|166154326|ref|YP_001654444.1| hypothetical protein CTL0360 [Chlamydia trachomatis 434/Bu]: C-rich region from 304 to 350 corrected with score 55
>CTRA-434-01-000360 	gi|166154334|ref|YP_001654452.1| chaperone-protease ClpB [Chlamydia trachomatis 434/Bu]: E-rich region from 412 to 534 corrected with score 58
>CTRA-434-01-000364 	gi|166154338|ref|YP_001654456.1| inclusion membrane protein F [Chlamydia trachomatis 434/Bu]: V-rich region from 29 to 92 corrected with score 40
>CTRA-434-01-000365 	gi|166154339|ref|YP_001654457.1| inclusion membrane protein G [Chlamydia trachomatis 434/Bu]: S-rich region from 87 to 166 corrected with score 54
>CTRA-434-01-000373 	gi|166154347|ref|YP_001654465.1| 30S ribosomal protein S9 [Chlamydia trachomatis 434/Bu]: K-rich region from 88 to 129 corrected with score 47
>CTRA-434-01-000391 	gi|166154365|ref|YP_001654483.1| hypothetical protein CTL0399 [Chlamydia trachomatis 434/Bu]: T-rich region from 2 to 62 corrected with score 46
>CTRA-434-01-000394 	gi|166154368|ref|YP_001654486.1| putative integral membrane protein [Chlamydia trachomatis 434/Bu]: Q-rich region from 961 to 1155 corrected with score 42
>CTRA-434-01-000400 	gi|166154374|ref|YP_001654492.1| MAC/perforin family protein [Chlamydia trachomatis 434/Bu]: S-rich region from 383 to 549 corrected with score 92
>CTRA-434-01-000402 	gi|166154376|ref|YP_001654494.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 97 corrected with score 43
>CTRA-434-01-000405 	gi|166154379|ref|YP_001654497.1| hypothetical protein CTL0419A [Chlamydia trachomatis 434/Bu]: L-rich region from 34 to 64 corrected with score 41
>CTRA-434-01-000450 	gi|166154424|ref|YP_001654542.1| hypothetical protein CTL0466 [Chlamydia trachomatis 434/Bu]: V-rich region from 37 to 98 corrected with score 43
>CTRA-434-01-000455 	gi|166154429|ref|YP_001654547.1| prenyltransferase [Chlamydia trachomatis 434/Bu]: L-rich region from 90 to 162 corrected with score 44
>CTRA-434-01-000465 	gi|166154439|ref|YP_001654557.1| hypothetical protein CTL0480 [Chlamydia trachomatis 434/Bu]: V-rich region from 37 to 76 corrected with score 42
>CTRA-434-01-000466 	gi|166154440|ref|YP_001654558.1| hypothetical protein CTL0481 [Chlamydia trachomatis 434/Bu]: A-rich region from 8 to 74 corrected with score 40
>CTRA-434-01-000467 	gi|166154441|ref|YP_001654559.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis 434/Bu]: L-rich region from 16 to 105 corrected with score 41
>CTRA-434-01-000523 	gi|166154497|ref|YP_001654615.1| ATP-dependent Clp protease [Chlamydia trachomatis 434/Bu]: E-rich region from 443 to 500 corrected with score 57
>CTRA-434-01-000523 	gi|166154497|ref|YP_001654615.1| ATP-dependent Clp protease [Chlamydia trachomatis 434/Bu]: S-rich region from 153 to 171 corrected with score 44
>CTRA-434-01-000525 	gi|166154499|ref|YP_001654617.1| hypothetical protein CTL0540 [Chlamydia trachomatis 434/Bu]: A-rich region from 32 to 93 corrected with score 53
>CTRA-434-01-000526 	gi|166154500|ref|YP_001654618.1| hypothetical protein CTL0541 [Chlamydia trachomatis 434/Bu]: K-rich region from 70 to 294 corrected with score 90
>CTRA-434-01-000526 	gi|166154500|ref|YP_001654618.1| hypothetical protein CTL0541 [Chlamydia trachomatis 434/Bu]: A-rich region from 178 to 302 corrected with score 43
>CTRA-434-01-000546 	gi|166154520|ref|YP_001654638.1| V-type ATP synthase subunit E [Chlamydia trachomatis 434/Bu]: E-rich region from 18 to 70 corrected with score 40
>CTRA-434-01-000552 	gi|166154526|ref|YP_001654644.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis 434/Bu]: A-rich region from 34 to 56 corrected with score 45
>CTRA-434-01-000570 	gi|166154544|ref|YP_001654662.1| excinuclease ABC subunit A [Chlamydia trachomatis 434/Bu]: P-rich region from 918 to 934 corrected with score 40
>CTRA-434-01-000571 	gi|166154545|ref|YP_001654663.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis 434/Bu]: S-rich region from 375 to 443 corrected with score 44
>CTRA-434-01-000579 	gi|166154553|ref|YP_001654671.1| heat shock chaperone protein [Chlamydia trachomatis 434/Bu]: G-rich region from 67 to 134 corrected with score 74
>CTRA-434-01-000590 	gi|166154564|ref|YP_001654682.1| preprotein translocase subunit SecG [Chlamydia trachomatis 434/Bu]: L-rich region from 1 to 25 corrected with score 41
>CTRA-434-01-000597 	gi|166154571|ref|YP_001654689.1| hypothetical protein CTL0614 [Chlamydia trachomatis 434/Bu]: E-rich region from 41 to 208 corrected with score 66
>CTRA-434-01-000609 	gi|166154583|ref|YP_001654701.1| hypothetical protein CTL0626 [Chlamydia trachomatis 434/Bu]: H-rich region from 5 to 20 corrected with score 46
>CTRA-434-01-000615 	gi|166154589|ref|YP_001654707.1| putative nucleotide-binding protein [Chlamydia trachomatis 434/Bu]: R-rich region from 193 to 225 corrected with score 42
>CTRA-434-01-000629 	gi|166154603|ref|YP_001654721.1| hypothetical protein CTL0648 [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 133 corrected with score 40
>CTRA-434-01-000632 	gi|166154606|ref|YP_001654724.1| HSP-70 cofactor [Chlamydia trachomatis 434/Bu]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-434-01-000633 	gi|166154607|ref|YP_001654725.1| molecular chaperone DnaK [Chlamydia trachomatis 434/Bu]: S-rich region from 575 to 647 corrected with score 56
>CTRA-434-01-000633 	gi|166154607|ref|YP_001654725.1| molecular chaperone DnaK [Chlamydia trachomatis 434/Bu]: E-rich region from 493 to 577 corrected with score 52
>CTRA-434-01-000634 	gi|166154608|ref|YP_001654726.1| exoribonuclease II [Chlamydia trachomatis 434/Bu]: K-rich region from 653 to 694 corrected with score 81
>CTRA-434-01-000635 	gi|166154609|ref|YP_001654727.1| hypothetical protein CTL0655 [Chlamydia trachomatis 434/Bu]: E-rich region from 25 to 174 corrected with score 66
>CTRA-434-01-000650 	gi|166154624|ref|YP_001654742.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 31 to 1333 corrected with score 506
>CTRA-434-01-000650 	gi|166154624|ref|YP_001654742.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: A-rich region from 801 to 841 corrected with score 51
>CTRA-434-01-000650 	gi|166154624|ref|YP_001654742.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: T-rich region from 35 to 99 corrected with score 50
>CTRA-434-01-000651 	gi|166154625|ref|YP_001654743.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 5 to 1357 corrected with score 531
>CTRA-434-01-000651 	gi|166154625|ref|YP_001654743.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: T-rich region from 1330 to 1354 corrected with score 53
>CTRA-434-01-000651 	gi|166154625|ref|YP_001654743.1| polymorphic outer membrane protein [Chlamydia trachomatis 434/Bu]: E-rich region from 625 to 733 corrected with score 47
>CTRA-434-01-000654 	gi|166154628|ref|YP_001654746.1| metal transporter, membrane permease component [Chlamydia trachomatis 434/Bu]: L-rich region from 186 to 273 corrected with score 56
>CTRA-434-01-000655 	gi|166154629|ref|YP_001654747.1| GTPase ObgE [Chlamydia trachomatis 434/Bu]: G-rich region from 31 to 43 corrected with score 43
>CTRA-434-01-000678 	gi|166154652|ref|YP_001654770.1| 30S ribosomal protein S12 [Chlamydia trachomatis 434/Bu]: K-rich region from 15 to 57 corrected with score 42
>CTRA-434-01-000682 	gi|166154656|ref|YP_001654774.1| 60kD cysteine-rich outer membrane protein [Chlamydia trachomatis 434/Bu]: K-rich region from 51 to 91 corrected with score 40
>CTRA-434-01-000696 	gi|166154670|ref|YP_001654788.1| translocated actin-recruiting phosphoprotein [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 845 corrected with score 418
>CTRA-434-01-000696 	gi|166154670|ref|YP_001654788.1| translocated actin-recruiting phosphoprotein [Chlamydia trachomatis 434/Bu]: T-rich region from 11 to 116 corrected with score 84
>CTRA-434-01-000696 	gi|166154670|ref|YP_001654788.1| translocated actin-recruiting phosphoprotein [Chlamydia trachomatis 434/Bu]: T-rich region from 658 to 703 corrected with score 57
>CTRA-434-01-000696 	gi|166154670|ref|YP_001654788.1| translocated actin-recruiting phosphoprotein [Chlamydia trachomatis 434/Bu]: N-rich region from 650 to 716 corrected with score 40
>CTRA-434-01-000699 	gi|166154673|ref|YP_001654791.1| peptide chain release factor 2 [Chlamydia trachomatis 434/Bu]: E-rich region from 24 to 100 corrected with score 42
>CTRA-434-01-000724 	gi|166154698|ref|YP_001654816.1| hypothetical protein CTL0745 [Chlamydia trachomatis 434/Bu]: L-rich region from 20 to 81 corrected with score 50
>CTRA-434-01-000731 	gi|166154705|ref|YP_001654823.1| transcription termination factor Rho [Chlamydia trachomatis 434/Bu]: E-rich region from 2 to 44 corrected with score 41
>CTRA-434-01-000744 	gi|166154718|ref|YP_001654836.1| hypothetical protein CTL0765 [Chlamydia trachomatis 434/Bu]: Q-rich region from 36 to 139 corrected with score 69
>CTRA-434-01-000745 	gi|166154719|ref|YP_001654837.1| hypothetical protein CTL0766 [Chlamydia trachomatis 434/Bu]: E-rich region from 138 to 288 corrected with score 66
>CTRA-434-01-000745 	gi|166154719|ref|YP_001654837.1| hypothetical protein CTL0766 [Chlamydia trachomatis 434/Bu]: K-rich region from 138 to 164 corrected with score 49
>CTRA-434-01-000749 	gi|166154723|ref|YP_001654841.1| 30S ribosomal protein S11 [Chlamydia trachomatis 434/Bu]: A-rich region from 48 to 107 corrected with score 43
>CTRA-434-01-000752 	gi|166154726|ref|YP_001654844.1| 50S ribosomal protein L15 [Chlamydia trachomatis 434/Bu]: G-rich region from 21 to 55 corrected with score 42
>CTRA-434-01-000770 	gi|166154744|ref|YP_001654862.1| hypothetical protein CTL0791 [Chlamydia trachomatis 434/Bu]: A-rich region from 43 to 238 corrected with score 48
>CTRA-434-01-000785 	gi|166154759|ref|YP_001654877.1| putative sugar phosphate permease [Chlamydia trachomatis 434/Bu]: E-rich region from 221 to 252 corrected with score 43
>CTRA-434-01-000800 	gi|166154774|ref|YP_001654892.1| type III secretion system protein, membrane component [Chlamydia trachomatis 434/Bu]: E-rich region from 286 to 324 corrected with score 41
>CTRA-434-01-000803 	gi|166154777|ref|YP_001654895.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]: L-rich region from 93 to 121 corrected with score 44
>CTRA-434-01-000803 	gi|166154777|ref|YP_001654895.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]: M-rich region from 229 to 303 corrected with score 41
>CTRA-434-01-000805 	gi|166154779|ref|YP_001654897.1| type III secretion system, membrane protein [Chlamydia trachomatis 434/Bu]: M-rich region from 164 to 256 corrected with score 47
>CTRA-434-01-000813 	gi|166154787|ref|YP_001654905.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu]: S-rich region from 388 to 444 corrected with score 52
>CTRA-434-01-000817 	gi|166154791|ref|YP_001654909.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis 434/Bu]: K-rich region from 177 to 232 corrected with score 58
>CTRA-434-01-000819 	gi|166154793|ref|YP_001654911.1| putative type III secretion system membrane protein [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 308 corrected with score 124
>CTRA-434-01-000819 	gi|166154793|ref|YP_001654911.1| putative type III secretion system membrane protein [Chlamydia trachomatis 434/Bu]: A-rich region from 278 to 487 corrected with score 83
>CTRA-434-01-000819 	gi|166154793|ref|YP_001654911.1| putative type III secretion system membrane protein [Chlamydia trachomatis 434/Bu]: T-rich region from 242 to 310 corrected with score 46
>CTRA-434-01-000820 	gi|166154794|ref|YP_001654912.1| putative type III secretion system protein [Chlamydia trachomatis 434/Bu]: S-rich region from 20 to 436 corrected with score 195
>CTRA-434-01-000820 	gi|166154794|ref|YP_001654912.1| putative type III secretion system protein [Chlamydia trachomatis 434/Bu]: A-rich region from 231 to 313 corrected with score 58
>CTRA-434-01-000820 	gi|166154794|ref|YP_001654912.1| putative type III secretion system protein [Chlamydia trachomatis 434/Bu]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-434-01-000838 	gi|166154812|ref|YP_001654930.1| histone H1-I [Chlamydia trachomatis 434/Bu]: P-rich region from 47 to 101 corrected with score 60
>CTRA-434-01-000838 	gi|166154812|ref|YP_001654930.1| histone H1-I [Chlamydia trachomatis 434/Bu]: K-rich region from 30 to 115 corrected with score 42
>CTRA-434-01-000841 	gi|166154815|ref|YP_001654933.1| putative soluble transglycosylase [Chlamydia trachomatis 434/Bu]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-434-01-000857 	gi|166154831|ref|YP_001654949.1| putative integral membrane protein [Chlamydia trachomatis 434/Bu]: Q-rich region from 85 to 225 corrected with score 68
>CTRA-434-01-000858 	gi|166154832|ref|YP_001654950.1| 30S ribosomal protein S20 [Chlamydia trachomatis 434/Bu]: K-rich region from 4 to 45 corrected with score 47
>CTRA-434-01-000859 	gi|166154833|ref|YP_001654951.1| hypothetical protein CTL0882 [Chlamydia trachomatis 434/Bu]: S-rich region from 16 to 83 corrected with score 44
>CTRA-434-01-000863 	gi|166154837|ref|YP_001654955.1| hypothetical protein CTL0886 [Chlamydia trachomatis 434/Bu]: S-rich region from 2 to 601 corrected with score 194
>CTRA-AHA-01-000000 	gi|76788712|ref|YP_327798.1| hypothetical protein CTA_0001 [Chlamydia trachomatis A/HAR-13]: S-rich region from 7 to 139 corrected with score 66
>CTRA-AHA-01-000005 	gi|76788717|ref|YP_327803.1| hypothetical protein CTA_0006 [Chlamydia trachomatis A/HAR-13]: S-rich region from 232 to 361 corrected with score 138
>CTRA-AHA-01-000047 	gi|76788759|ref|YP_327845.1| histone-like protein 2 [Chlamydia trachomatis A/HAR-13]: K-rich region from 7 to 158 corrected with score 139
>CTRA-AHA-01-000047 	gi|76788759|ref|YP_327845.1| histone-like protein 2 [Chlamydia trachomatis A/HAR-13]: A-rich region from 14 to 178 corrected with score 113
>CTRA-AHA-01-000050 	gi|76788762|ref|YP_327848.1| hypothetical protein CTA_0053 [Chlamydia trachomatis A/HAR-13]: S-rich region from 168 to 479 corrected with score 88
>CTRA-AHA-01-000051 	gi|76788763|ref|YP_327849.1| hypothetical protein CTA_0054 [Chlamydia trachomatis A/HAR-13]: T-rich region from 261 to 580 corrected with score 188
>CTRA-AHA-01-000051 	gi|76788763|ref|YP_327849.1| hypothetical protein CTA_0054 [Chlamydia trachomatis A/HAR-13]: P-rich region from 241 to 292 corrected with score 73
>CTRA-AHA-01-000051 	gi|76788763|ref|YP_327849.1| hypothetical protein CTA_0054 [Chlamydia trachomatis A/HAR-13]: P-rich region from 388 to 413 corrected with score 58
>CTRA-AHA-01-000051 	gi|76788763|ref|YP_327849.1| hypothetical protein CTA_0054 [Chlamydia trachomatis A/HAR-13]: S-rich region from 261 to 514 corrected with score 53
>CTRA-AHA-01-000052 	gi|76788764|ref|YP_327850.1| hypothetical protein CTA_0055 [Chlamydia trachomatis A/HAR-13]: T-rich region from 309 to 519 corrected with score 134
>CTRA-AHA-01-000052 	gi|76788764|ref|YP_327850.1| hypothetical protein CTA_0055 [Chlamydia trachomatis A/HAR-13]: S-rich region from 405 to 509 corrected with score 59
>CTRA-AHA-01-000052 	gi|76788764|ref|YP_327850.1| hypothetical protein CTA_0055 [Chlamydia trachomatis A/HAR-13]: E-rich region from 102 to 155 corrected with score 53
>CTRA-AHA-01-000054 	gi|76788766|ref|YP_327852.1| hypothetical protein CTA_0057 [Chlamydia trachomatis A/HAR-13]: E-rich region from 27 to 127 corrected with score 51
>CTRA-AHA-01-000059 	gi|76788771|ref|YP_327857.1| hypothetical protein CTA_0062 [Chlamydia trachomatis A/HAR-13]: P-rich region from 79 to 119 corrected with score 59
>CTRA-AHA-01-000082 	gi|76788794|ref|YP_327880.1| hypothetical protein CTA_0086 [Chlamydia trachomatis A/HAR-13]: F-rich region from 46 to 98 corrected with score 41
>CTRA-AHA-01-000083 	gi|76788795|ref|YP_327881.1| hypothetical protein CTA_0087 [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 387 corrected with score 89
>CTRA-AHA-01-000083 	gi|76788795|ref|YP_327881.1| hypothetical protein CTA_0087 [Chlamydia trachomatis A/HAR-13]: D-rich region from 526 to 560 corrected with score 43
>CTRA-AHA-01-000090 	gi|76788802|ref|YP_327888.1| low calcium response protein E [Chlamydia trachomatis A/HAR-13]: P-rich region from 385 to 421 corrected with score 55
>CTRA-AHA-01-000090 	gi|76788802|ref|YP_327888.1| low calcium response protein E [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 233 corrected with score 52
>CTRA-AHA-01-000090 	gi|76788802|ref|YP_327888.1| low calcium response protein E [Chlamydia trachomatis A/HAR-13]: E-rich region from 61 to 111 corrected with score 44
>CTRA-AHA-01-000091 	gi|76788803|ref|YP_327889.1| low calcium response protein D [Chlamydia trachomatis A/HAR-13]: L-rich region from 27 to 91 corrected with score 51
>CTRA-AHA-01-000098 	gi|76788810|ref|YP_327896.1| translation initiation factor IF-2 [Chlamydia trachomatis A/HAR-13]: S-rich region from 33 to 286 corrected with score 104
>CTRA-AHA-01-000098 	gi|76788810|ref|YP_327896.1| translation initiation factor IF-2 [Chlamydia trachomatis A/HAR-13]: K-rich region from 2 to 57 corrected with score 43
>CTRA-AHA-01-000098 	gi|76788810|ref|YP_327896.1| translation initiation factor IF-2 [Chlamydia trachomatis A/HAR-13]: E-rich region from 123 to 156 corrected with score 40
>CTRA-AHA-01-000107 	gi|76788819|ref|YP_327905.1| hypothetical protein CTA_0111 [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 114 corrected with score 74
>CTRA-AHA-01-000108 	gi|76788820|ref|YP_327906.1| hypothetical protein CTA_0112 [Chlamydia trachomatis A/HAR-13]: C-rich region from 166 to 208 corrected with score 47
>CTRA-AHA-01-000116 	gi|76788828|ref|YP_327914.1| ClpB [Chlamydia trachomatis A/HAR-13]: E-rich region from 412 to 534 corrected with score 58
>CTRA-AHA-01-000120 	gi|76788832|ref|YP_327918.1| inclusion membrane protein F [Chlamydia trachomatis A/HAR-13]: A-rich region from 29 to 92 corrected with score 41
>CTRA-AHA-01-000121 	gi|76788833|ref|YP_327919.1| inclusion membrane protein G [Chlamydia trachomatis A/HAR-13]: S-rich region from 89 to 166 corrected with score 53
>CTRA-AHA-01-000129 	gi|76788841|ref|YP_327927.1| 30S ribosomal protein S9 [Chlamydia trachomatis A/HAR-13]: K-rich region from 88 to 129 corrected with score 49
>CTRA-AHA-01-000147 	gi|76788859|ref|YP_327945.1| hypothetical protein CTA_0153 [Chlamydia trachomatis A/HAR-13]: T-rich region from 2 to 62 corrected with score 47
>CTRA-AHA-01-000150 	gi|76788862|ref|YP_327948.1| hypothetical protein CTA_0156 [Chlamydia trachomatis A/HAR-13]: Q-rich region from 961 to 1155 corrected with score 48
>CTRA-AHA-01-000156 	gi|76788868|ref|YP_327954.1| MAC/perforin family protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 383 to 549 corrected with score 92
>CTRA-AHA-01-000160 	gi|76788872|ref|YP_327958.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) family protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 99 corrected with score 55
>CTRA-AHA-01-000168 	gi|76788880|ref|YP_327966.1| hypothetical protein CTA_0174 [Chlamydia trachomatis A/HAR-13]: L-rich region from 34 to 64 corrected with score 41
>CTRA-AHA-01-000169 	gi|76788881|ref|YP_327967.1| adherence factor [Chlamydia trachomatis A/HAR-13]: T-rich region from 6 to 160 corrected with score 46
>CTRA-AHA-01-000169 	gi|76788881|ref|YP_327967.1| adherence factor [Chlamydia trachomatis A/HAR-13]: P-rich region from 86 to 107 corrected with score 40
>CTRA-AHA-01-000224 	gi|76788936|ref|YP_328022.1| hypothetical protein CTA_0234 [Chlamydia trachomatis A/HAR-13]: V-rich region from 37 to 98 corrected with score 43
>CTRA-AHA-01-000229 	gi|76788941|ref|YP_328027.1| prenyltransferase [Chlamydia trachomatis A/HAR-13]: L-rich region from 90 to 162 corrected with score 44
>CTRA-AHA-01-000233 	gi|76788945|ref|YP_328031.1| hypothetical protein CTA_0245 [Chlamydia trachomatis A/HAR-13]: D-rich region from 248 to 262 corrected with score 41
>CTRA-AHA-01-000238 	gi|76788950|ref|YP_328036.1| hypothetical protein CTA_0250 [Chlamydia trachomatis A/HAR-13]: V-rich region from 37 to 76 corrected with score 40
>CTRA-AHA-01-000239 	gi|76788951|ref|YP_328037.1| hypothetical protein CTA_0251 [Chlamydia trachomatis A/HAR-13]: A-rich region from 8 to 74 corrected with score 44
>CTRA-AHA-01-000240 	gi|76788952|ref|YP_328038.1| proton/sodium-glutamate symport protein [Chlamydia trachomatis A/HAR-13]: L-rich region from 16 to 105 corrected with score 41
>CTRA-AHA-01-000259 	gi|76788971|ref|YP_328057.1| hypothetical protein CTA_0271 [Chlamydia trachomatis A/HAR-13]: A-rich region from 28 to 96 corrected with score 44
>CTRA-AHA-01-000286 	gi|76788998|ref|YP_328084.1| hypothetical protein CTA_0298 [Chlamydia trachomatis A/HAR-13]: E-rich region from 32 to 82 corrected with score 40
>CTRA-AHA-01-000296 	gi|76789008|ref|YP_328094.1| negative regulator of genetic competence [Chlamydia trachomatis A/HAR-13]: E-rich region from 443 to 500 corrected with score 57
>CTRA-AHA-01-000296 	gi|76789008|ref|YP_328094.1| negative regulator of genetic competence [Chlamydia trachomatis A/HAR-13]: S-rich region from 153 to 171 corrected with score 44
>CTRA-AHA-01-000298 	gi|76789010|ref|YP_328096.1| hypothetical protein CTA_0310 [Chlamydia trachomatis A/HAR-13]: A-rich region from 32 to 93 corrected with score 56
>CTRA-AHA-01-000299 	gi|76789011|ref|YP_328097.1| hypothetical protein CTA_0311 [Chlamydia trachomatis A/HAR-13]: K-rich region from 70 to 292 corrected with score 81
>CTRA-AHA-01-000299 	gi|76789011|ref|YP_328097.1| hypothetical protein CTA_0311 [Chlamydia trachomatis A/HAR-13]: A-rich region from 163 to 300 corrected with score 45
>CTRA-AHA-01-000320 	gi|76789032|ref|YP_328118.1| V-type ATP synthase subunit E [Chlamydia trachomatis A/HAR-13]: E-rich region from 18 to 70 corrected with score 40
>CTRA-AHA-01-000326 	gi|76789038|ref|YP_328124.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis A/HAR-13]: A-rich region from 34 to 56 corrected with score 45
>CTRA-AHA-01-000336 	gi|76789048|ref|YP_328134.1| hypothetical protein CTA_0350 [Chlamydia trachomatis A/HAR-13]: T-rich region from 516 to 569 corrected with score 49
>CTRA-AHA-01-000336 	gi|76789048|ref|YP_328134.1| hypothetical protein CTA_0350 [Chlamydia trachomatis A/HAR-13]: D-rich region from 30 to 39 corrected with score 40
>CTRA-AHA-01-000346 	gi|76789058|ref|YP_328144.1| excinuclease ABC subunit A [Chlamydia trachomatis A/HAR-13]: P-rich region from 918 to 934 corrected with score 40
>CTRA-AHA-01-000347 	gi|76789059|ref|YP_328145.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis A/HAR-13]: S-rich region from 375 to 443 corrected with score 43
>CTRA-AHA-01-000355 	gi|76789067|ref|YP_328153.1| hypothetical protein CTA_0370 [Chlamydia trachomatis A/HAR-13]: G-rich region from 67 to 134 corrected with score 74
>CTRA-AHA-01-000376 	gi|76789088|ref|YP_328174.1| hypothetical protein CTA_0392 [Chlamydia trachomatis A/HAR-13]: E-rich region from 41 to 208 corrected with score 64
>CTRA-AHA-01-000388 	gi|76789100|ref|YP_328186.1| hypothetical protein CTA_0404 [Chlamydia trachomatis A/HAR-13]: H-rich region from 5 to 20 corrected with score 46
>CTRA-AHA-01-000397 	gi|76789109|ref|YP_328195.1| GTP-binding protein [Chlamydia trachomatis A/HAR-13]: R-rich region from 193 to 225 corrected with score 42
>CTRA-AHA-01-000411 	gi|76789123|ref|YP_328209.1| hypothetical protein CTA_0427 [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 133 corrected with score 50
>CTRA-AHA-01-000414 	gi|76789126|ref|YP_328212.1| HSP-70 cofactor [Chlamydia trachomatis A/HAR-13]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-AHA-01-000415 	gi|76789127|ref|YP_328213.1| molecular chaperone DnaK [Chlamydia trachomatis A/HAR-13]: S-rich region from 575 to 647 corrected with score 56
>CTRA-AHA-01-000415 	gi|76789127|ref|YP_328213.1| molecular chaperone DnaK [Chlamydia trachomatis A/HAR-13]: E-rich region from 493 to 577 corrected with score 52
>CTRA-AHA-01-000416 	gi|76789128|ref|YP_328214.1| exoribonuclease II [Chlamydia trachomatis A/HAR-13]: K-rich region from 653 to 694 corrected with score 80
>CTRA-AHA-01-000417 	gi|76789129|ref|YP_328215.1| hypothetical protein CTA_0433 [Chlamydia trachomatis A/HAR-13]: E-rich region from 25 to 174 corrected with score 66
>CTRA-AHA-01-000432 	gi|76789144|ref|YP_328230.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 31 to 1335 corrected with score 504
>CTRA-AHA-01-000432 	gi|76789144|ref|YP_328230.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: A-rich region from 800 to 840 corrected with score 51
>CTRA-AHA-01-000432 	gi|76789144|ref|YP_328230.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: T-rich region from 35 to 99 corrected with score 47
>CTRA-AHA-01-000433 	gi|76789145|ref|YP_328231.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 5 to 1367 corrected with score 542
>CTRA-AHA-01-000433 	gi|76789145|ref|YP_328231.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: T-rich region from 1340 to 1364 corrected with score 53
>CTRA-AHA-01-000433 	gi|76789145|ref|YP_328231.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: E-rich region from 625 to 733 corrected with score 52
>CTRA-AHA-01-000433 	gi|76789145|ref|YP_328231.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: N-rich region from 649 to 720 corrected with score 42
>CTRA-AHA-01-000436 	gi|76789148|ref|YP_328234.1| metal transport system permease protein [Chlamydia trachomatis A/HAR-13]: L-rich region from 186 to 273 corrected with score 56
>CTRA-AHA-01-000437 	gi|76789149|ref|YP_328235.1| GTPase ObgE [Chlamydia trachomatis A/HAR-13]: G-rich region from 31 to 43 corrected with score 43
>CTRA-AHA-01-000461 	gi|162019864|ref|YP_328259.2| 30S ribosomal protein S12 [Chlamydia trachomatis A/HAR-13]: K-rich region from 9 to 51 corrected with score 42
>CTRA-AHA-01-000464 	gi|76789176|ref|YP_328262.1| sulfur-rich protein [Chlamydia trachomatis A/HAR-13]: V-rich region from 43 to 89 corrected with score 40
>CTRA-AHA-01-000480 	gi|76789192|ref|YP_328278.1| tarp protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 946 corrected with score 412
>CTRA-AHA-01-000480 	gi|76789192|ref|YP_328278.1| tarp protein [Chlamydia trachomatis A/HAR-13]: T-rich region from 11 to 116 corrected with score 79
>CTRA-AHA-01-000480 	gi|76789192|ref|YP_328278.1| tarp protein [Chlamydia trachomatis A/HAR-13]: T-rich region from 522 to 567 corrected with score 55
>CTRA-AHA-01-000483 	gi|76789195|ref|YP_328281.1| peptide chain release factor 2 [Chlamydia trachomatis A/HAR-13]: E-rich region from 25 to 101 corrected with score 41
>CTRA-AHA-01-000509 	gi|76789221|ref|YP_328307.1| hypothetical protein CTA_0531 [Chlamydia trachomatis A/HAR-13]: L-rich region from 20 to 81 corrected with score 50
>CTRA-AHA-01-000516 	gi|76789228|ref|YP_328314.1| transcription termination factor Rho [Chlamydia trachomatis A/HAR-13]: E-rich region from 2 to 44 corrected with score 41
>CTRA-AHA-01-000528 	gi|76789240|ref|YP_328326.1| hypothetical protein CTA_0551 [Chlamydia trachomatis A/HAR-13]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-AHA-01-000529 	gi|76789241|ref|YP_328327.1| hypothetical protein CTA_0553 [Chlamydia trachomatis A/HAR-13]: E-rich region from 138 to 288 corrected with score 63
>CTRA-AHA-01-000529 	gi|76789241|ref|YP_328327.1| hypothetical protein CTA_0553 [Chlamydia trachomatis A/HAR-13]: K-rich region from 138 to 164 corrected with score 49
>CTRA-AHA-01-000533 	gi|76789245|ref|YP_328331.1| 30S ribosomal protein S11 [Chlamydia trachomatis A/HAR-13]: A-rich region from 48 to 107 corrected with score 43
>CTRA-AHA-01-000554 	gi|76789266|ref|YP_328352.1| hypothetical protein CTA_0578 [Chlamydia trachomatis A/HAR-13]: A-rich region from 43 to 214 corrected with score 57
>CTRA-AHA-01-000569 	gi|76789281|ref|YP_328367.1| sugar phosphate permease [Chlamydia trachomatis A/HAR-13]: E-rich region from 221 to 252 corrected with score 43
>CTRA-AHA-01-000584 	gi|76789296|ref|YP_328382.1| SctJ [Chlamydia trachomatis A/HAR-13]: E-rich region from 287 to 325 corrected with score 42
>CTRA-AHA-01-000587 	gi|76789299|ref|YP_328385.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]: L-rich region from 93 to 121 corrected with score 44
>CTRA-AHA-01-000587 	gi|76789299|ref|YP_328385.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]: M-rich region from 229 to 303 corrected with score 41
>CTRA-AHA-01-000589 	gi|76789301|ref|YP_328387.1| SctT [Chlamydia trachomatis A/HAR-13]: M-rich region from 164 to 256 corrected with score 47
>CTRA-AHA-01-000597 	gi|76789309|ref|YP_328395.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13]: S-rich region from 388 to 444 corrected with score 48
>CTRA-AHA-01-000601 	gi|76789313|ref|YP_328399.1| type III secretion chaperone/low calcium response protein H [Chlamydia trachomatis A/HAR-13]: K-rich region from 177 to 232 corrected with score 58
>CTRA-AHA-01-000603 	gi|76789315|ref|YP_328401.1| hypothetical protein CTA_0628 [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 308 corrected with score 118
>CTRA-AHA-01-000603 	gi|76789315|ref|YP_328401.1| hypothetical protein CTA_0628 [Chlamydia trachomatis A/HAR-13]: A-rich region from 278 to 487 corrected with score 94
>CTRA-AHA-01-000604 	gi|76789316|ref|YP_328402.1| hypothetical protein CTA_0629 [Chlamydia trachomatis A/HAR-13]: S-rich region from 20 to 436 corrected with score 197
>CTRA-AHA-01-000604 	gi|76789316|ref|YP_328402.1| hypothetical protein CTA_0629 [Chlamydia trachomatis A/HAR-13]: A-rich region from 231 to 313 corrected with score 58
>CTRA-AHA-01-000604 	gi|76789316|ref|YP_328402.1| hypothetical protein CTA_0629 [Chlamydia trachomatis A/HAR-13]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-AHA-01-000624 	gi|76789336|ref|YP_328422.1| histone H1-I [Chlamydia trachomatis A/HAR-13]: P-rich region from 47 to 106 corrected with score 60
>CTRA-AHA-01-000624 	gi|76789336|ref|YP_328422.1| histone H1-I [Chlamydia trachomatis A/HAR-13]: K-rich region from 30 to 115 corrected with score 42
>CTRA-AHA-01-000627 	gi|76789339|ref|YP_328425.1| soluble lytic murein transglycosylase and related regulatory proteins [Chlamydia trachomatis A/HAR-13]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-AHA-01-000643 	gi|76789355|ref|YP_328441.1| hypothetical protein CTA_0669 [Chlamydia trachomatis A/HAR-13]: Q-rich region from 85 to 225 corrected with score 61
>CTRA-AHA-01-000644 	gi|76789356|ref|YP_328442.1| 30S ribosomal protein S20 [Chlamydia trachomatis A/HAR-13]: K-rich region from 4 to 45 corrected with score 47
>CTRA-AHA-01-000645 	gi|76789357|ref|YP_328443.1| hypothetical protein CTA_0671 [Chlamydia trachomatis A/HAR-13]: S-rich region from 16 to 83 corrected with score 40
>CTRA-AHA-01-000648 	gi|76789360|ref|YP_328446.1| hypothetical protein CTA_0674 [Chlamydia trachomatis A/HAR-13]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-AHA-01-000649 	gi|76789361|ref|YP_328447.1| CHLPN 76 kD protein-like [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 601 corrected with score 191
>CTRA-AHA-01-000662 	gi|76789374|ref|YP_328460.1| hypothetical protein CTA_0689 [Chlamydia trachomatis A/HAR-13]: K-rich region from 101 to 140 corrected with score 44
>CTRA-AHA-01-000669 	gi|76789381|ref|YP_328467.1| hypothetical protein CTA_0697 [Chlamydia trachomatis A/HAR-13]: F-rich region from 169 to 204 corrected with score 48
>CTRA-AHA-01-000670 	gi|76789382|ref|YP_328468.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydia trachomatis A/HAR-13]: K-rich region from 744 to 781 corrected with score 50
>CTRA-AHA-01-000670 	gi|76789382|ref|YP_328468.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydia trachomatis A/HAR-13]: E-rich region from 437 to 474 corrected with score 49
>CTRA-AHA-01-000689 	gi|76789401|ref|YP_328487.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis A/HAR-13]: K-rich region from 307 to 384 corrected with score 55
>CTRA-AHA-01-000692 	gi|76789404|ref|YP_328490.1| phosphopeptide binding protein [Chlamydia trachomatis A/HAR-13]: E-rich region from 100 to 344 corrected with score 168
>CTRA-AHA-01-000692 	gi|76789404|ref|YP_328490.1| phosphopeptide binding protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 109 to 333 corrected with score 108
>CTRA-AHA-01-000698 	gi|76789410|ref|YP_328496.1| hypothetical protein CTA_0727 [Chlamydia trachomatis A/HAR-13]: E-rich region from 13 to 168 corrected with score 114
>CTRA-AHA-01-000699 	gi|76789411|ref|YP_328497.1| hypothetical protein CTA_0728 [Chlamydia trachomatis A/HAR-13]: S-rich region from 37 to 125 corrected with score 45
>CTRA-AHA-01-000699 	gi|76789411|ref|YP_328497.1| hypothetical protein CTA_0728 [Chlamydia trachomatis A/HAR-13]: E-rich region from 252 to 280 corrected with score 42
>CTRA-AHA-01-000702 	gi|76789414|ref|YP_328500.1| general secretion pathway protein D [Chlamydia trachomatis A/HAR-13]: Q-rich region from 127 to 245 corrected with score 66
>CTRA-AHA-01-000723 	gi|76789435|ref|YP_328521.1| hypothetical protein CTA_0756 [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 77 corrected with score 41
>CTRA-AHA-01-000731 	gi|76789443|ref|YP_328529.1| GTP-binding protein EngA [Chlamydia trachomatis A/HAR-13]: E-rich region from 169 to 212 corrected with score 40
>CTRA-AHA-01-000735 	gi|76789447|ref|YP_328533.1| trigger factor [Chlamydia trachomatis A/HAR-13]: E-rich region from 255 to 361 corrected with score 46
>CTRA-AHA-01-000736 	gi|76789448|ref|YP_328534.1| SWF/SNF family helicase [Chlamydia trachomatis A/HAR-13]: E-rich region from 103 to 140 corrected with score 41
>CTRA-AHA-01-000739 	gi|76789451|ref|YP_328537.1| hypothetical protein CTA_0773 [Chlamydia trachomatis A/HAR-13]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-AHA-01-000772 	gi|76789484|ref|YP_328570.1| histone-like developmental protein [Chlamydia trachomatis A/HAR-13]: K-rich region from 4 to 125 corrected with score 110
>CTRA-AHA-01-000772 	gi|76789484|ref|YP_328570.1| histone-like developmental protein [Chlamydia trachomatis A/HAR-13]: A-rich region from 64 to 117 corrected with score 42
>CTRA-AHA-01-000779 	gi|76789491|ref|YP_328577.1| hypothetical protein CTA_0816 [Chlamydia trachomatis A/HAR-13]: F-rich region from 35 to 65 corrected with score 44
>CTRA-AHA-01-000780 	gi|76789492|ref|YP_328578.1| transketolase [Chlamydia trachomatis A/HAR-13]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-AHA-01-000798 	gi|76789510|ref|YP_328596.1| hypothetical protein CTA_0838 [Chlamydia trachomatis A/HAR-13]: E-rich region from 313 to 451 corrected with score 41
>CTRA-AHA-01-000809 	gi|76789521|ref|YP_328607.1| hypothetical protein CTA_0849 [Chlamydia trachomatis A/HAR-13]: P-rich region from 43 to 78 corrected with score 45
>CTRA-AHA-01-000815 	gi|76789527|ref|YP_328613.1| 50S ribosomal protein L34 [Chlamydia trachomatis A/HAR-13]: R-rich region from 2 to 40 corrected with score 41
>CTRA-AHA-01-000817 	gi|76789529|ref|YP_328615.1| 30S ribosomal protein S14 [Chlamydia trachomatis A/HAR-13]: K-rich region from 3 to 53 corrected with score 40
>CTRA-AHA-01-000825 	gi|76789537|ref|YP_328623.1| hypothetical protein CTA_0865 [Chlamydia trachomatis A/HAR-13]: A-rich region from 20 to 71 corrected with score 46
>CTRA-AHA-01-000843 	gi|76789555|ref|YP_328641.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 121 to 671 corrected with score 60
>CTRA-AHA-01-000844 	gi|76789556|ref|YP_328642.1| hypothetical protein CTA_0885 [Chlamydia trachomatis A/HAR-13]: E-rich region from 95 to 254 corrected with score 80
>CTRA-AHA-01-000852 	gi|76789564|ref|YP_328650.1| transporter [Chlamydia trachomatis A/HAR-13]: L-rich region from 141 to 186 corrected with score 50
>CTRA-AHA-01-000857 	gi|76789569|ref|YP_328655.1| insulinase family metalloprotease [Chlamydia trachomatis A/HAR-13]: E-rich region from 468 to 508 corrected with score 42
>CTRA-AHA-01-000867 	gi|76789579|ref|YP_328665.1| 50S ribosomal protein L35 [Chlamydia trachomatis A/HAR-13]: K-rich region from 3 to 47 corrected with score 40
>CTRA-AHA-01-000882 	gi|76789594|ref|YP_328680.1| hypothetical protein CTA_0925 [Chlamydia trachomatis A/HAR-13]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-AHA-01-000884 	gi|76789596|ref|YP_328682.1| hypothetical protein CTA_0927 [Chlamydia trachomatis A/HAR-13]: E-rich region from 141 to 310 corrected with score 47
>CTRA-AHA-01-000895 	gi|76789607|ref|YP_328693.1| hypothetical protein CTA_0938 [Chlamydia trachomatis A/HAR-13]: S-rich region from 12 to 280 corrected with score 90
>CTRA-AHA-01-000895 	gi|76789607|ref|YP_328693.1| hypothetical protein CTA_0938 [Chlamydia trachomatis A/HAR-13]: E-rich region from 227 to 267 corrected with score 46
>CTRA-AHA-01-000896 	gi|76789608|ref|YP_328694.1| hypothetical protein CTA_0939 [Chlamydia trachomatis A/HAR-13]: S-rich region from 2 to 233 corrected with score 98
>CTRA-AHA-01-000898 	gi|76789610|ref|YP_328696.1| hypothetical protein CTA_0941 [Chlamydia trachomatis A/HAR-13]: S-rich region from 102 to 335 corrected with score 119
>CTRA-AHA-01-000898 	gi|76789610|ref|YP_328696.1| hypothetical protein CTA_0941 [Chlamydia trachomatis A/HAR-13]: E-rich region from 235 to 283 corrected with score 51
>CTRA-AHA-01-000899 	gi|76789611|ref|YP_328697.1| hypothetical protein CTA_0943 [Chlamydia trachomatis A/HAR-13]: Y-rich region from 52 to 64 corrected with score 49
>CTRA-AHA-01-000899 	gi|76789611|ref|YP_328697.1| hypothetical protein CTA_0943 [Chlamydia trachomatis A/HAR-13]: K-rich region from 78 to 101 corrected with score 40
>CTRA-AHA-01-000904 	gi|76789616|ref|YP_328702.1| hypothetical protein CTA_0948 [Chlamydia trachomatis A/HAR-13]: P-rich region from 74 to 143 corrected with score 151
>CTRA-AHA-01-000906 	gi|76789618|ref|YP_328704.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 660 to 829 corrected with score 75
>CTRA-AHA-01-000906 	gi|76789618|ref|YP_328704.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: T-rich region from 647 to 690 corrected with score 51
>CTRA-AHA-01-000906 	gi|76789618|ref|YP_328704.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 51 to 365 corrected with score 40
>CTRA-AHA-01-000907 	gi|76789619|ref|YP_328705.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 105 to 615 corrected with score 70
>CTRA-AHA-01-000908 	gi|76789620|ref|YP_328706.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 56 to 562 corrected with score 146
>CTRA-AHA-01-000908 	gi|76789620|ref|YP_328706.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: T-rich region from 519 to 638 corrected with score 44
>CTRA-AHA-01-000910 	gi|76789622|ref|YP_328708.1| polymorphic outer membrane protein [Chlamydia trachomatis A/HAR-13]: S-rich region from 107 to 780 corrected with score 116
>CTRA-BJA-01-000000 	gi|237802434|ref|YP_002887628.1| hypothetical protein JALI_0001 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 7 to 139 corrected with score 67
>CTRA-BJA-01-000005 	gi|237802439|ref|YP_002887633.1| hypothetical protein JALI_0051 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 232 to 361 corrected with score 138
>CTRA-BJA-01-000047 	gi|237802481|ref|YP_002887675.1| Histone H1-like protein HC2 [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 7 to 149 corrected with score 124
>CTRA-BJA-01-000047 	gi|237802481|ref|YP_002887675.1| Histone H1-like protein HC2 [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 14 to 169 corrected with score 98
>CTRA-BJA-01-000050 	gi|237802484|ref|YP_002887678.1| hypothetical protein JALI_0481 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 168 to 479 corrected with score 88
>CTRA-BJA-01-000051 	gi|237802485|ref|YP_002887679.1| hypothetical protein JALI_0491 [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 162 to 574 corrected with score 192
>CTRA-BJA-01-000051 	gi|237802485|ref|YP_002887679.1| hypothetical protein JALI_0491 [Chlamydia trachomatis B/Jali20/OT]: P-rich region from 382 to 407 corrected with score 58
>CTRA-BJA-01-000051 	gi|237802485|ref|YP_002887679.1| hypothetical protein JALI_0491 [Chlamydia trachomatis B/Jali20/OT]: P-rich region from 241 to 286 corrected with score 54
>CTRA-BJA-01-000051 	gi|237802485|ref|YP_002887679.1| hypothetical protein JALI_0491 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 255 to 508 corrected with score 53
>CTRA-BJA-01-000052 	gi|237802486|ref|YP_002887680.1| hypothetical protein JALI_0501 [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 309 to 519 corrected with score 134
>CTRA-BJA-01-000052 	gi|237802486|ref|YP_002887680.1| hypothetical protein JALI_0501 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 405 to 509 corrected with score 59
>CTRA-BJA-01-000052 	gi|237802486|ref|YP_002887680.1| hypothetical protein JALI_0501 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 102 to 155 corrected with score 53
>CTRA-BJA-01-000054 	gi|237802488|ref|YP_002887682.1| hypothetical protein JALI_0521 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 27 to 127 corrected with score 51
>CTRA-BJA-01-000065 	gi|237802499|ref|YP_002887693.1| ADP,ATP carrier protein [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 435 to 523 corrected with score 50
>CTRA-BJA-01-000069 	gi|237802503|ref|YP_002887697.1| ABC transport protein, membrane permease [Chlamydia trachomatis B/Jali20/OT]: V-rich region from 39 to 304 corrected with score 42
>CTRA-BJA-01-000080 	gi|237802514|ref|YP_002887708.1| hypothetical protein JALI_0811 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 2 to 387 corrected with score 94
>CTRA-BJA-01-000080 	gi|237802514|ref|YP_002887708.1| hypothetical protein JALI_0811 [Chlamydia trachomatis B/Jali20/OT]: D-rich region from 526 to 560 corrected with score 43
>CTRA-BJA-01-000087 	gi|237802521|ref|YP_002887715.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis B/Jali20/OT]: P-rich region from 385 to 421 corrected with score 55
>CTRA-BJA-01-000087 	gi|237802521|ref|YP_002887715.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 61 to 111 corrected with score 49
>CTRA-BJA-01-000088 	gi|237802522|ref|YP_002887716.1| low calcium response protein D (predicted to be part of the TTSS apparatus) [Chlamydia trachomatis B/Jali20/OT]: L-rich region from 27 to 91 corrected with score 51
>CTRA-BJA-01-000094 	gi|237802528|ref|YP_002887722.1| translation initiation factor IF-2 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 33 to 286 corrected with score 104
>CTRA-BJA-01-000094 	gi|237802528|ref|YP_002887722.1| translation initiation factor IF-2 [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 2 to 57 corrected with score 43
>CTRA-BJA-01-000094 	gi|237802528|ref|YP_002887722.1| translation initiation factor IF-2 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 123 to 156 corrected with score 40
>CTRA-BJA-01-000110 	gi|237802544|ref|YP_002887738.1| chaperone-protease ClpB [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 412 to 534 corrected with score 58
>CTRA-BJA-01-000114 	gi|237802548|ref|YP_002887742.1| inclusion membrane protein F [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 29 to 92 corrected with score 42
>CTRA-BJA-01-000115 	gi|237802549|ref|YP_002887743.1| inclusion membrane protein G [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 89 to 166 corrected with score 53
>CTRA-BJA-01-000122 	gi|237802556|ref|YP_002887750.1| 30S ribosomal protein S9 [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 88 to 129 corrected with score 51
>CTRA-BJA-01-000139 	gi|237802573|ref|YP_002887767.1| hypothetical protein JALI_1431 [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 2 to 62 corrected with score 47
>CTRA-BJA-01-000142 	gi|237802576|ref|YP_002887770.1| putative integral membrane protein [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 961 to 1155 corrected with score 47
>CTRA-BJA-01-000148 	gi|237802582|ref|YP_002887776.1| MAC/perforin family protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 383 to 549 corrected with score 92
>CTRA-BJA-01-000149 	gi|237802583|ref|YP_002887777.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 2 to 141 corrected with score 114
>CTRA-BJA-01-000149 	gi|237802583|ref|YP_002887777.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis B/Jali20/OT]: H-rich region from 72 to 133 corrected with score 54
>CTRA-BJA-01-000150 	gi|237802584|ref|YP_002887778.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 2 to 94 corrected with score 52
>CTRA-BJA-01-000153 	gi|237802587|ref|YP_002887781.1| hypothetical protein JALI_1611 [Chlamydia trachomatis B/Jali20/OT]: L-rich region from 34 to 64 corrected with score 41
>CTRA-BJA-01-000154 	gi|237802588|ref|YP_002887782.1| putative cytoadherence factor (fragment) [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 24 to 204 corrected with score 46
>CTRA-BJA-01-000154 	gi|237802588|ref|YP_002887782.1| putative cytoadherence factor (fragment) [Chlamydia trachomatis B/Jali20/OT]: P-rich region from 130 to 151 corrected with score 40
>CTRA-BJA-01-000203 	gi|237802637|ref|YP_002887831.1| candidate inclusion membrane protein [Chlamydia trachomatis B/Jali20/OT]: V-rich region from 37 to 98 corrected with score 43
>CTRA-BJA-01-000208 	gi|237802642|ref|YP_002887836.1| prenyltransferase [Chlamydia trachomatis B/Jali20/OT]: L-rich region from 90 to 162 corrected with score 44
>CTRA-BJA-01-000213 	gi|237802647|ref|YP_002887841.1| candidate inclusion membrane protein [Chlamydia trachomatis B/Jali20/OT]: D-rich region from 248 to 262 corrected with score 41
>CTRA-BJA-01-000218 	gi|237802652|ref|YP_002887846.1| candidate inclusion membrane protein [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 8 to 74 corrected with score 48
>CTRA-BJA-01-000219 	gi|237802653|ref|YP_002887847.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis B/Jali20/OT]: L-rich region from 16 to 105 corrected with score 41
>CTRA-BJA-01-000238 	gi|237802672|ref|YP_002887866.1| hypothetical protein JALI_2441 [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 28 to 96 corrected with score 40
>CTRA-BJA-01-000265 	gi|237802699|ref|YP_002887893.1| hypothetical protein JALI_2711 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 32 to 82 corrected with score 40
>CTRA-BJA-01-000275 	gi|237802709|ref|YP_002887903.1| ATP-dependent Clp protease [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 443 to 500 corrected with score 57
>CTRA-BJA-01-000275 	gi|237802709|ref|YP_002887903.1| ATP-dependent Clp protease [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 153 to 171 corrected with score 44
>CTRA-BJA-01-000277 	gi|237802711|ref|YP_002887905.1| candidate inclusion membrane protein [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 32 to 93 corrected with score 58
>CTRA-BJA-01-000278 	gi|237802712|ref|YP_002887906.1| hypothetical protein JALI_2841 [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 70 to 292 corrected with score 87
>CTRA-BJA-01-000278 	gi|237802712|ref|YP_002887906.1| hypothetical protein JALI_2841 [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 176 to 300 corrected with score 45
>CTRA-BJA-01-000299 	gi|237802733|ref|YP_002887927.1| V-type ATP synthase subunit E [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 18 to 70 corrected with score 40
>CTRA-BJA-01-000305 	gi|237802739|ref|YP_002887933.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 34 to 56 corrected with score 45
>CTRA-BJA-01-000323 	gi|237802757|ref|YP_002887951.1| excinuclease ABC subunit A [Chlamydia trachomatis B/Jali20/OT]: P-rich region from 918 to 934 corrected with score 40
>CTRA-BJA-01-000324 	gi|237802758|ref|YP_002887952.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 375 to 443 corrected with score 43
>CTRA-BJA-01-000332 	gi|237802766|ref|YP_002887960.1| chaperone protein DnaJ [Chlamydia trachomatis B/Jali20/OT]: G-rich region from 67 to 134 corrected with score 74
>CTRA-BJA-01-000343 	gi|237802777|ref|YP_002887971.1| preprotein translocase subunit SecG [Chlamydia trachomatis B/Jali20/OT]: L-rich region from 1 to 25 corrected with score 41
>CTRA-BJA-01-000349 	gi|237802783|ref|YP_002887977.1| putative inner membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 10 to 32 corrected with score 44
>CTRA-BJA-01-000351 	gi|237802785|ref|YP_002887979.1| hypothetical protein JALI_3581 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 41 to 208 corrected with score 64
>CTRA-BJA-01-000363 	gi|237802797|ref|YP_002887991.1| hypothetical protein JALI_3701 [Chlamydia trachomatis B/Jali20/OT]: H-rich region from 5 to 20 corrected with score 46
>CTRA-BJA-01-000369 	gi|237802803|ref|YP_002887997.1| putative nucleotide-binding protein [Chlamydia trachomatis B/Jali20/OT]: R-rich region from 193 to 225 corrected with score 42
>CTRA-BJA-01-000383 	gi|237802817|ref|YP_002888011.1| hypothetical protein JALI_3911 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 2 to 133 corrected with score 45
>CTRA-BJA-01-000386 	gi|237802820|ref|YP_002888014.1| HSP-70 Cofactor [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-BJA-01-000387 	gi|237802821|ref|YP_002888015.1| molecular chaperone DnaK [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 575 to 647 corrected with score 56
>CTRA-BJA-01-000387 	gi|237802821|ref|YP_002888015.1| molecular chaperone DnaK [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 493 to 577 corrected with score 52
>CTRA-BJA-01-000388 	gi|237802822|ref|YP_002888016.1| exoribonuclease II [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 653 to 694 corrected with score 80
>CTRA-BJA-01-000389 	gi|237802823|ref|YP_002888017.1| hypothetical protein JALI_3971 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 25 to 174 corrected with score 66
>CTRA-BJA-01-000404 	gi|237802838|ref|YP_002888032.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 31 to 1335 corrected with score 502
>CTRA-BJA-01-000404 	gi|237802838|ref|YP_002888032.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 800 to 840 corrected with score 47
>CTRA-BJA-01-000404 	gi|237802838|ref|YP_002888032.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 35 to 99 corrected with score 47
>CTRA-BJA-01-000405 	gi|237802839|ref|YP_002888033.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 5 to 1367 corrected with score 541
>CTRA-BJA-01-000405 	gi|237802839|ref|YP_002888033.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 1340 to 1364 corrected with score 53
>CTRA-BJA-01-000405 	gi|237802839|ref|YP_002888033.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 625 to 733 corrected with score 52
>CTRA-BJA-01-000405 	gi|237802839|ref|YP_002888033.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: N-rich region from 649 to 720 corrected with score 42
>CTRA-BJA-01-000408 	gi|237802842|ref|YP_002888036.1| metal transporter, membrane permease component [Chlamydia trachomatis B/Jali20/OT]: L-rich region from 186 to 273 corrected with score 56
>CTRA-BJA-01-000409 	gi|237802843|ref|YP_002888037.1| GTPase ObgE [Chlamydia trachomatis B/Jali20/OT]: G-rich region from 31 to 43 corrected with score 43
>CTRA-BJA-01-000432 	gi|237802866|ref|YP_002888060.1| 30S ribosomal protein S12 [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 15 to 57 corrected with score 42
>CTRA-BJA-01-000450 	gi|237802884|ref|YP_002888078.1| Translocated actin-recruiting phosphoprotein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 2 to 938 corrected with score 402
>CTRA-BJA-01-000450 	gi|237802884|ref|YP_002888078.1| Translocated actin-recruiting phosphoprotein [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 11 to 108 corrected with score 65
>CTRA-BJA-01-000450 	gi|237802884|ref|YP_002888078.1| Translocated actin-recruiting phosphoprotein [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 514 to 559 corrected with score 55
>CTRA-BJA-01-000453 	gi|237802887|ref|YP_002888081.1| peptide chain release factor 2 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 24 to 100 corrected with score 41
>CTRA-BJA-01-000478 	gi|237802912|ref|YP_002888106.1| hypothetical protein JALI_4861 [Chlamydia trachomatis B/Jali20/OT]: L-rich region from 20 to 81 corrected with score 50
>CTRA-BJA-01-000485 	gi|237802919|ref|YP_002888113.1| transcription termination factor Rho [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 2 to 44 corrected with score 41
>CTRA-BJA-01-000498 	gi|237802932|ref|YP_002888126.1| hypothetical protein JALI_5061 [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-BJA-01-000499 	gi|237802933|ref|YP_002888127.1| hypothetical protein JALI_5071 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 138 to 288 corrected with score 64
>CTRA-BJA-01-000499 	gi|237802933|ref|YP_002888127.1| hypothetical protein JALI_5071 [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 138 to 164 corrected with score 49
>CTRA-BJA-01-000503 	gi|237802937|ref|YP_002888131.1| 30S ribosomal protein S11 [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 48 to 107 corrected with score 43
>CTRA-BJA-01-000524 	gi|237802958|ref|YP_002888152.1| hypothetical protein JALI_5321 [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 43 to 214 corrected with score 53
>CTRA-BJA-01-000539 	gi|237802973|ref|YP_002888167.1| putative sugar phosphate permease [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 221 to 252 corrected with score 43
>CTRA-BJA-01-000554 	gi|237802988|ref|YP_002888182.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 287 to 325 corrected with score 42
>CTRA-BJA-01-000557 	gi|237802991|ref|YP_002888185.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT]: L-rich region from 93 to 121 corrected with score 44
>CTRA-BJA-01-000557 	gi|237802991|ref|YP_002888185.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT]: M-rich region from 229 to 303 corrected with score 41
>CTRA-BJA-01-000559 	gi|237802993|ref|YP_002888187.1| type III secretion system, membrane protein [Chlamydia trachomatis B/Jali20/OT]: M-rich region from 164 to 256 corrected with score 47
>CTRA-BJA-01-000567 	gi|237803001|ref|YP_002888195.1| general secretion pathway protein D [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 388 to 444 corrected with score 48
>CTRA-BJA-01-000571 	gi|237803005|ref|YP_002888199.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 177 to 232 corrected with score 58
>CTRA-BJA-01-000573 	gi|237803007|ref|YP_002888201.1| putative type III secretion system membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 2 to 308 corrected with score 118
>CTRA-BJA-01-000573 	gi|237803007|ref|YP_002888201.1| putative type III secretion system membrane protein [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 278 to 487 corrected with score 94
>CTRA-BJA-01-000574 	gi|237803008|ref|YP_002888202.1| putative type III secretion system protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 20 to 436 corrected with score 197
>CTRA-BJA-01-000574 	gi|237803008|ref|YP_002888202.1| putative type III secretion system protein [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 231 to 313 corrected with score 58
>CTRA-BJA-01-000574 	gi|237803008|ref|YP_002888202.1| putative type III secretion system protein [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-BJA-01-000592 	gi|237803026|ref|YP_002888220.1| histone H1-I [Chlamydia trachomatis B/Jali20/OT]: P-rich region from 47 to 101 corrected with score 60
>CTRA-BJA-01-000592 	gi|237803026|ref|YP_002888220.1| histone H1-I [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 30 to 115 corrected with score 42
>CTRA-BJA-01-000595 	gi|237803029|ref|YP_002888223.1| putative soluble transglycosylase [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-BJA-01-000611 	gi|237803045|ref|YP_002888239.1| putative integral membrane protein [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 85 to 225 corrected with score 65
>CTRA-BJA-01-000612 	gi|237803046|ref|YP_002888240.1| 30S ribosomal protein S20 [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 4 to 45 corrected with score 47
>CTRA-BJA-01-000613 	gi|237803047|ref|YP_002888241.1| hypothetical protein JALI_6221 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 16 to 83 corrected with score 40
>CTRA-BJA-01-000616 	gi|237803050|ref|YP_002888244.1| hypothetical protein JALI_6251 [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-BJA-01-000617 	gi|237803051|ref|YP_002888245.1| hypothetical protein JALI_6261 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 2 to 601 corrected with score 187
>CTRA-BJA-01-000630 	gi|237803064|ref|YP_002888258.1| hypothetical protein JALI_6391 [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 101 to 140 corrected with score 44
>CTRA-BJA-01-000637 	gi|237803071|ref|YP_002888265.1| hypothetical protein JALI_6461 [Chlamydia trachomatis B/Jali20/OT]: F-rich region from 169 to 204 corrected with score 48
>CTRA-BJA-01-000638 	gi|237803072|ref|YP_002888266.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 744 to 781 corrected with score 50
>CTRA-BJA-01-000638 	gi|237803072|ref|YP_002888266.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 437 to 474 corrected with score 49
>CTRA-BJA-01-000657 	gi|237803091|ref|YP_002888285.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 307 to 384 corrected with score 55
>CTRA-BJA-01-000660 	gi|237803094|ref|YP_002888288.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 100 to 344 corrected with score 168
>CTRA-BJA-01-000660 	gi|237803094|ref|YP_002888288.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 109 to 333 corrected with score 108
>CTRA-BJA-01-000666 	gi|237803100|ref|YP_002888294.1| hypothetical protein JALI_6751 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 13 to 168 corrected with score 114
>CTRA-BJA-01-000667 	gi|237803101|ref|YP_002888295.1| hypothetical protein JALI_6761 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 37 to 125 corrected with score 45
>CTRA-BJA-01-000667 	gi|237803101|ref|YP_002888295.1| hypothetical protein JALI_6761 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 252 to 280 corrected with score 42
>CTRA-BJA-01-000670 	gi|237803104|ref|YP_002888298.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 127 to 245 corrected with score 66
>CTRA-BJA-01-000691 	gi|237803125|ref|YP_002888319.1| hypothetical protein JALI_7001 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 2 to 77 corrected with score 41
>CTRA-BJA-01-000699 	gi|237803133|ref|YP_002888327.1| GTP-binding protein EngA [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 169 to 212 corrected with score 40
>CTRA-BJA-01-000703 	gi|237803137|ref|YP_002888331.1| trigger factor [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 255 to 361 corrected with score 46
>CTRA-BJA-01-000704 	gi|237803138|ref|YP_002888332.1| putative helicase [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 103 to 140 corrected with score 41
>CTRA-BJA-01-000707 	gi|237803141|ref|YP_002888335.1| hypothetical protein JALI_7161 [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-BJA-01-000739 	gi|237803173|ref|YP_002888367.1| histone H1--like developmental protein [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 4 to 125 corrected with score 110
>CTRA-BJA-01-000739 	gi|237803173|ref|YP_002888367.1| histone H1--like developmental protein [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 64 to 117 corrected with score 42
>CTRA-BJA-01-000746 	gi|237803180|ref|YP_002888374.1| transketolase [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-BJA-01-000764 	gi|237803198|ref|YP_002888392.1| hypothetical protein JALI_7731 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 388 to 451 corrected with score 40
>CTRA-BJA-01-000775 	gi|237803209|ref|YP_002888403.1| hypothetical protein JALI_7841 [Chlamydia trachomatis B/Jali20/OT]: P-rich region from 43 to 78 corrected with score 45
>CTRA-BJA-01-000781 	gi|237803215|ref|YP_002888409.1| 50S ribosomal protein L34 [Chlamydia trachomatis B/Jali20/OT]: R-rich region from 2 to 40 corrected with score 41
>CTRA-BJA-01-000783 	gi|237803217|ref|YP_002888411.1| 30S ribosomal protein S14 [Chlamydia trachomatis B/Jali20/OT]: K-rich region from 3 to 53 corrected with score 40
>CTRA-BJA-01-000791 	gi|237803225|ref|YP_002888419.1| hypothetical protein JALI_8001 [Chlamydia trachomatis B/Jali20/OT]: A-rich region from 20 to 71 corrected with score 46
>CTRA-BJA-01-000809 	gi|237803243|ref|YP_002888437.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 121 to 671 corrected with score 60
>CTRA-BJA-01-000810 	gi|237803244|ref|YP_002888438.1| candidate inclusion membrane protein [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 95 to 254 corrected with score 81
>CTRA-BJA-01-000817 	gi|237803251|ref|YP_002888445.1| putative membrane transport protein [Chlamydia trachomatis B/Jali20/OT]: L-rich region from 141 to 186 corrected with score 50
>CTRA-BJA-01-000822 	gi|237803256|ref|YP_002888450.1| metalloprotease-insulinase [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 468 to 508 corrected with score 42
>CTRA-BJA-01-000847 	gi|237803281|ref|YP_002888475.1| hypothetical protein JALI_8571 [Chlamydia trachomatis B/Jali20/OT]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-BJA-01-000849 	gi|237803283|ref|YP_002888477.1| putative integral membrane protein [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 141 to 310 corrected with score 47
>CTRA-BJA-01-000860 	gi|237803294|ref|YP_002888488.1| hypothetical protein JALI_8711 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 12 to 280 corrected with score 90
>CTRA-BJA-01-000860 	gi|237803294|ref|YP_002888488.1| hypothetical protein JALI_8711 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 227 to 267 corrected with score 46
>CTRA-BJA-01-000861 	gi|237803295|ref|YP_002888489.1| putative type III secretion translocator [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 2 to 233 corrected with score 99
>CTRA-BJA-01-000863 	gi|237803297|ref|YP_002888491.1| hypothetical protein JALI_8741 [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 8 to 335 corrected with score 119
>CTRA-BJA-01-000863 	gi|237803297|ref|YP_002888491.1| hypothetical protein JALI_8741 [Chlamydia trachomatis B/Jali20/OT]: E-rich region from 235 to 283 corrected with score 47
>CTRA-BJA-01-000868 	gi|237803302|ref|YP_002888496.1| hypothetical protein JALI_8791 [Chlamydia trachomatis B/Jali20/OT]: P-rich region from 74 to 143 corrected with score 151
>CTRA-BJA-01-000870 	gi|237803304|ref|YP_002888498.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 660 to 829 corrected with score 75
>CTRA-BJA-01-000870 	gi|237803304|ref|YP_002888498.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 647 to 690 corrected with score 51
>CTRA-BJA-01-000870 	gi|237803304|ref|YP_002888498.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 51 to 365 corrected with score 41
>CTRA-BJA-01-000871 	gi|237803305|ref|YP_002888499.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 105 to 615 corrected with score 70
>CTRA-BJA-01-000872 	gi|237803306|ref|YP_002888500.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 56 to 562 corrected with score 146
>CTRA-BJA-01-000872 	gi|237803306|ref|YP_002888500.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: T-rich region from 519 to 638 corrected with score 44
>CTRA-BJA-01-000874 	gi|237803308|ref|YP_002888502.1| polymorphic outer membrane protein [Chlamydia trachomatis B/Jali20/OT]: S-rich region from 107 to 780 corrected with score 116
>CTRA-BTZ-01-000000 	gi|237804349|ref|YP_002888503.1| hypothetical protein CTB_0001 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 7 to 137 corrected with score 68
>CTRA-BTZ-01-000005 	gi|237804354|ref|YP_002888508.1| hypothetical protein CTB_0051 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 232 to 361 corrected with score 138
>CTRA-BTZ-01-000047 	gi|237804396|ref|YP_002888550.1| Histone H1-like protein HC2 [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 7 to 122 corrected with score 106
>CTRA-BTZ-01-000047 	gi|237804396|ref|YP_002888550.1| Histone H1-like protein HC2 [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 14 to 142 corrected with score 89
>CTRA-BTZ-01-000050 	gi|237804399|ref|YP_002888553.1| hypothetical protein CTB_0481 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 168 to 479 corrected with score 88
>CTRA-BTZ-01-000051 	gi|237804400|ref|YP_002888554.1| hypothetical protein CTB_0491 [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 261 to 580 corrected with score 188
>CTRA-BTZ-01-000051 	gi|237804400|ref|YP_002888554.1| hypothetical protein CTB_0491 [Chlamydia trachomatis B/TZ1A828/OT]: P-rich region from 241 to 292 corrected with score 73
>CTRA-BTZ-01-000051 	gi|237804400|ref|YP_002888554.1| hypothetical protein CTB_0491 [Chlamydia trachomatis B/TZ1A828/OT]: P-rich region from 388 to 413 corrected with score 58
>CTRA-BTZ-01-000051 	gi|237804400|ref|YP_002888554.1| hypothetical protein CTB_0491 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 261 to 514 corrected with score 53
>CTRA-BTZ-01-000052 	gi|237804401|ref|YP_002888555.1| hypothetical protein CTB_0501 [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 309 to 519 corrected with score 134
>CTRA-BTZ-01-000052 	gi|237804401|ref|YP_002888555.1| hypothetical protein CTB_0501 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 405 to 509 corrected with score 59
>CTRA-BTZ-01-000052 	gi|237804401|ref|YP_002888555.1| hypothetical protein CTB_0501 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 102 to 155 corrected with score 53
>CTRA-BTZ-01-000054 	gi|237804403|ref|YP_002888557.1| hypothetical protein CTB_0521 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 27 to 127 corrected with score 49
>CTRA-BTZ-01-000081 	gi|237804430|ref|YP_002888584.1| hypothetical protein CTB_0801 [Chlamydia trachomatis B/TZ1A828/OT]: F-rich region from 54 to 106 corrected with score 41
>CTRA-BTZ-01-000082 	gi|237804431|ref|YP_002888585.1| hypothetical protein CTB_0811 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 2 to 387 corrected with score 89
>CTRA-BTZ-01-000082 	gi|237804431|ref|YP_002888585.1| hypothetical protein CTB_0811 [Chlamydia trachomatis B/TZ1A828/OT]: D-rich region from 526 to 560 corrected with score 43
>CTRA-BTZ-01-000089 	gi|237804438|ref|YP_002888592.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis B/TZ1A828/OT]: P-rich region from 385 to 421 corrected with score 55
>CTRA-BTZ-01-000089 	gi|237804438|ref|YP_002888592.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 61 to 111 corrected with score 49
>CTRA-BTZ-01-000090 	gi|237804439|ref|YP_002888593.1| low calcium response protein D (predicted to be part of the TTSS apparatus) [Chlamydia trachomatis B/TZ1A828/OT]: L-rich region from 27 to 91 corrected with score 51
>CTRA-BTZ-01-000096 	gi|237804445|ref|YP_002888599.1| translation initiation factor IF-2 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 33 to 286 corrected with score 104
>CTRA-BTZ-01-000096 	gi|237804445|ref|YP_002888599.1| translation initiation factor IF-2 [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 2 to 57 corrected with score 43
>CTRA-BTZ-01-000096 	gi|237804445|ref|YP_002888599.1| translation initiation factor IF-2 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 123 to 156 corrected with score 40
>CTRA-BTZ-01-000112 	gi|237804461|ref|YP_002888615.1| chaperone-protease ClpB [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 412 to 534 corrected with score 58
>CTRA-BTZ-01-000116 	gi|237804465|ref|YP_002888619.1| inclusion membrane protein F [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 29 to 92 corrected with score 41
>CTRA-BTZ-01-000117 	gi|237804466|ref|YP_002888620.1| inclusion membrane protein G [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 89 to 166 corrected with score 53
>CTRA-BTZ-01-000124 	gi|237804473|ref|YP_002888627.1| 30S ribosomal protein S9 [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 88 to 129 corrected with score 49
>CTRA-BTZ-01-000142 	gi|237804491|ref|YP_002888645.1| hypothetical protein CTB_1431 [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 2 to 62 corrected with score 47
>CTRA-BTZ-01-000145 	gi|237804494|ref|YP_002888648.1| putative integral membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 961 to 1155 corrected with score 41
>CTRA-BTZ-01-000151 	gi|237804500|ref|YP_002888654.1| MAC/perforin family protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 383 to 549 corrected with score 92
>CTRA-BTZ-01-000152 	gi|237804501|ref|YP_002888655.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 2 to 141 corrected with score 115
>CTRA-BTZ-01-000152 	gi|237804501|ref|YP_002888655.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis B/TZ1A828/OT]: H-rich region from 4 to 133 corrected with score 54
>CTRA-BTZ-01-000154 	gi|237804503|ref|YP_002888657.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 2 to 99 corrected with score 54
>CTRA-BTZ-01-000159 	gi|237804508|ref|YP_002888662.1| hypothetical protein CTB_1611 [Chlamydia trachomatis B/TZ1A828/OT]: L-rich region from 34 to 64 corrected with score 41
>CTRA-BTZ-01-000160 	gi|237804509|ref|YP_002888663.1| putative cytoadherence factor (fragment) [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 24 to 204 corrected with score 46
>CTRA-BTZ-01-000160 	gi|237804509|ref|YP_002888663.1| putative cytoadherence factor (fragment) [Chlamydia trachomatis B/TZ1A828/OT]: P-rich region from 130 to 151 corrected with score 40
>CTRA-BTZ-01-000210 	gi|237804559|ref|YP_002888713.1| candidate inclusion membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: V-rich region from 37 to 98 corrected with score 40
>CTRA-BTZ-01-000215 	gi|237804564|ref|YP_002888718.1| prenyltransferase [Chlamydia trachomatis B/TZ1A828/OT]: L-rich region from 90 to 162 corrected with score 44
>CTRA-BTZ-01-000220 	gi|237804569|ref|YP_002888723.1| candidate inclusion membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: D-rich region from 248 to 262 corrected with score 41
>CTRA-BTZ-01-000226 	gi|237804575|ref|YP_002888729.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis B/TZ1A828/OT]: L-rich region from 16 to 105 corrected with score 41
>CTRA-BTZ-01-000272 	gi|237804621|ref|YP_002888775.1| hypothetical protein CTB_2711 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 32 to 82 corrected with score 40
>CTRA-BTZ-01-000282 	gi|237804631|ref|YP_002888785.1| ATP-dependent Clp protease [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 443 to 500 corrected with score 57
>CTRA-BTZ-01-000282 	gi|237804631|ref|YP_002888785.1| ATP-dependent Clp protease [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 153 to 171 corrected with score 44
>CTRA-BTZ-01-000284 	gi|237804633|ref|YP_002888787.1| candidate inclusion membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 32 to 93 corrected with score 56
>CTRA-BTZ-01-000285 	gi|237804634|ref|YP_002888788.1| hypothetical protein CTB_2841 [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 70 to 292 corrected with score 87
>CTRA-BTZ-01-000285 	gi|237804634|ref|YP_002888788.1| hypothetical protein CTB_2841 [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 176 to 300 corrected with score 45
>CTRA-BTZ-01-000306 	gi|237804655|ref|YP_002888809.1| V-type ATP synthase subunit E [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 18 to 70 corrected with score 40
>CTRA-BTZ-01-000312 	gi|237804661|ref|YP_002888815.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 34 to 56 corrected with score 45
>CTRA-BTZ-01-000330 	gi|237804679|ref|YP_002888833.1| excinuclease ABC subunit A [Chlamydia trachomatis B/TZ1A828/OT]: P-rich region from 918 to 934 corrected with score 40
>CTRA-BTZ-01-000331 	gi|237804680|ref|YP_002888834.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 375 to 443 corrected with score 43
>CTRA-BTZ-01-000339 	gi|237804688|ref|YP_002888842.1| chaperone protein DnaJ [Chlamydia trachomatis B/TZ1A828/OT]: G-rich region from 67 to 134 corrected with score 74
>CTRA-BTZ-01-000350 	gi|237804699|ref|YP_002888853.1| preprotein translocase subunit SecG [Chlamydia trachomatis B/TZ1A828/OT]: L-rich region from 1 to 25 corrected with score 41
>CTRA-BTZ-01-000358 	gi|237804707|ref|YP_002888861.1| hypothetical protein CTB_3581 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 41 to 208 corrected with score 64
>CTRA-BTZ-01-000370 	gi|237804719|ref|YP_002888873.1| hypothetical protein CTB_3701 [Chlamydia trachomatis B/TZ1A828/OT]: H-rich region from 5 to 20 corrected with score 46
>CTRA-BTZ-01-000376 	gi|237804725|ref|YP_002888879.1| putative nucleotide-binding protein [Chlamydia trachomatis B/TZ1A828/OT]: R-rich region from 193 to 225 corrected with score 42
>CTRA-BTZ-01-000390 	gi|237804739|ref|YP_002888893.1| hypothetical protein CTB_3911 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 2 to 133 corrected with score 45
>CTRA-BTZ-01-000393 	gi|237804742|ref|YP_002888896.1| HSP-70 Cofactor [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-BTZ-01-000394 	gi|237804743|ref|YP_002888897.1| molecular chaperone DnaK [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 575 to 647 corrected with score 56
>CTRA-BTZ-01-000394 	gi|237804743|ref|YP_002888897.1| molecular chaperone DnaK [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 493 to 577 corrected with score 52
>CTRA-BTZ-01-000395 	gi|237804744|ref|YP_002888898.1| exoribonuclease II [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 653 to 694 corrected with score 80
>CTRA-BTZ-01-000396 	gi|237804745|ref|YP_002888899.1| hypothetical protein CTB_3971 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 25 to 174 corrected with score 66
>CTRA-BTZ-01-000411 	gi|237804760|ref|YP_002888914.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 31 to 1335 corrected with score 500
>CTRA-BTZ-01-000411 	gi|237804760|ref|YP_002888914.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 800 to 840 corrected with score 51
>CTRA-BTZ-01-000411 	gi|237804760|ref|YP_002888914.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 35 to 99 corrected with score 41
>CTRA-BTZ-01-000412 	gi|237804761|ref|YP_002888915.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 5 to 1367 corrected with score 542
>CTRA-BTZ-01-000412 	gi|237804761|ref|YP_002888915.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 1340 to 1364 corrected with score 53
>CTRA-BTZ-01-000412 	gi|237804761|ref|YP_002888915.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 625 to 733 corrected with score 52
>CTRA-BTZ-01-000412 	gi|237804761|ref|YP_002888915.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: N-rich region from 649 to 720 corrected with score 42
>CTRA-BTZ-01-000415 	gi|237804764|ref|YP_002888918.1| metal transporter, membrane permease component [Chlamydia trachomatis B/TZ1A828/OT]: L-rich region from 186 to 273 corrected with score 56
>CTRA-BTZ-01-000416 	gi|237804765|ref|YP_002888919.1| GTPase ObgE [Chlamydia trachomatis B/TZ1A828/OT]: G-rich region from 31 to 43 corrected with score 43
>CTRA-BTZ-01-000439 	gi|237804788|ref|YP_002888942.1| 30S ribosomal protein S12 [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 15 to 57 corrected with score 42
>CTRA-BTZ-01-000442 	gi|237804791|ref|YP_002888945.1| cysteine-rich membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: V-rich region from 43 to 89 corrected with score 40
>CTRA-BTZ-01-000457 	gi|237804806|ref|YP_002888960.1| Translocated actin-recruiting phosphoprotein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 2 to 946 corrected with score 407
>CTRA-BTZ-01-000457 	gi|237804806|ref|YP_002888960.1| Translocated actin-recruiting phosphoprotein [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 11 to 116 corrected with score 79
>CTRA-BTZ-01-000457 	gi|237804806|ref|YP_002888960.1| Translocated actin-recruiting phosphoprotein [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 522 to 567 corrected with score 55
>CTRA-BTZ-01-000460 	gi|237804809|ref|YP_002888963.1| peptide chain release factor 2 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 24 to 100 corrected with score 41
>CTRA-BTZ-01-000485 	gi|237804834|ref|YP_002888988.1| hypothetical protein CTB_4861 [Chlamydia trachomatis B/TZ1A828/OT]: L-rich region from 20 to 81 corrected with score 50
>CTRA-BTZ-01-000492 	gi|237804841|ref|YP_002888995.1| transcription termination factor Rho [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 2 to 44 corrected with score 41
>CTRA-BTZ-01-000505 	gi|237804854|ref|YP_002889008.1| hypothetical protein CTB_5061 [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-BTZ-01-000506 	gi|237804855|ref|YP_002889009.1| hypothetical protein CTB_5071 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 138 to 288 corrected with score 64
>CTRA-BTZ-01-000506 	gi|237804855|ref|YP_002889009.1| hypothetical protein CTB_5071 [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 138 to 164 corrected with score 49
>CTRA-BTZ-01-000510 	gi|237804859|ref|YP_002889013.1| 30S ribosomal protein S11 [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 48 to 107 corrected with score 43
>CTRA-BTZ-01-000531 	gi|237804880|ref|YP_002889034.1| hypothetical protein CTB_5321 [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 43 to 214 corrected with score 57
>CTRA-BTZ-01-000546 	gi|237804895|ref|YP_002889049.1| putative sugar phosphate permease [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 221 to 252 corrected with score 43
>CTRA-BTZ-01-000561 	gi|237804910|ref|YP_002889064.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 287 to 325 corrected with score 42
>CTRA-BTZ-01-000564 	gi|237804913|ref|YP_002889067.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT]: L-rich region from 93 to 121 corrected with score 44
>CTRA-BTZ-01-000564 	gi|237804913|ref|YP_002889067.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT]: M-rich region from 229 to 303 corrected with score 41
>CTRA-BTZ-01-000566 	gi|237804915|ref|YP_002889069.1| type III secretion system, membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: M-rich region from 164 to 256 corrected with score 47
>CTRA-BTZ-01-000574 	gi|237804923|ref|YP_002889077.1| general secretion pathway protein D [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 388 to 444 corrected with score 48
>CTRA-BTZ-01-000578 	gi|237804927|ref|YP_002889081.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 177 to 232 corrected with score 58
>CTRA-BTZ-01-000580 	gi|237804929|ref|YP_002889083.1| putative type III secretion system membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 2 to 308 corrected with score 118
>CTRA-BTZ-01-000580 	gi|237804929|ref|YP_002889083.1| putative type III secretion system membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 278 to 487 corrected with score 94
>CTRA-BTZ-01-000581 	gi|237804930|ref|YP_002889084.1| putative type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 20 to 436 corrected with score 197
>CTRA-BTZ-01-000581 	gi|237804930|ref|YP_002889084.1| putative type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 231 to 313 corrected with score 58
>CTRA-BTZ-01-000581 	gi|237804930|ref|YP_002889084.1| putative type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-BTZ-01-000598 	gi|237804947|ref|YP_002889101.1| histone H1-I [Chlamydia trachomatis B/TZ1A828/OT]: P-rich region from 47 to 101 corrected with score 60
>CTRA-BTZ-01-000598 	gi|237804947|ref|YP_002889101.1| histone H1-I [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 30 to 115 corrected with score 42
>CTRA-BTZ-01-000601 	gi|237804950|ref|YP_002889104.1| putative soluble transglycosylase [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-BTZ-01-000617 	gi|237804966|ref|YP_002889120.1| putative integral membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 85 to 225 corrected with score 65
>CTRA-BTZ-01-000618 	gi|237804967|ref|YP_002889121.1| 30S ribosomal protein S20 [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 4 to 45 corrected with score 47
>CTRA-BTZ-01-000619 	gi|237804968|ref|YP_002889122.1| hypothetical protein CTB_6221 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 16 to 83 corrected with score 40
>CTRA-BTZ-01-000622 	gi|237804971|ref|YP_002889125.1| hypothetical protein CTB_6251 [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-BTZ-01-000623 	gi|237804972|ref|YP_002889126.1| hypothetical protein CTB_6261 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 2 to 601 corrected with score 183
>CTRA-BTZ-01-000636 	gi|237804985|ref|YP_002889139.1| hypothetical protein CTB_6391 [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 101 to 140 corrected with score 44
>CTRA-BTZ-01-000643 	gi|237804992|ref|YP_002889146.1| hypothetical protein CTB_6461 [Chlamydia trachomatis B/TZ1A828/OT]: F-rich region from 169 to 204 corrected with score 48
>CTRA-BTZ-01-000644 	gi|237804993|ref|YP_002889147.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 744 to 781 corrected with score 50
>CTRA-BTZ-01-000644 	gi|237804993|ref|YP_002889147.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 437 to 474 corrected with score 49
>CTRA-BTZ-01-000663 	gi|237805012|ref|YP_002889166.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 307 to 384 corrected with score 55
>CTRA-BTZ-01-000666 	gi|237805015|ref|YP_002889169.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 100 to 344 corrected with score 168
>CTRA-BTZ-01-000666 	gi|237805015|ref|YP_002889169.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 109 to 333 corrected with score 108
>CTRA-BTZ-01-000672 	gi|237805021|ref|YP_002889175.1| hypothetical protein CTB_6751 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 13 to 168 corrected with score 114
>CTRA-BTZ-01-000673 	gi|237805022|ref|YP_002889176.1| hypothetical protein CTB_6761 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 37 to 125 corrected with score 45
>CTRA-BTZ-01-000673 	gi|237805022|ref|YP_002889176.1| hypothetical protein CTB_6761 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 252 to 280 corrected with score 42
>CTRA-BTZ-01-000676 	gi|237805025|ref|YP_002889179.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 127 to 245 corrected with score 66
>CTRA-BTZ-01-000697 	gi|237805046|ref|YP_002889200.1| hypothetical protein CTB_7001 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 2 to 77 corrected with score 41
>CTRA-BTZ-01-000705 	gi|237805054|ref|YP_002889208.1| GTP-binding protein EngA [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 169 to 212 corrected with score 40
>CTRA-BTZ-01-000709 	gi|237805058|ref|YP_002889212.1| trigger factor [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 255 to 361 corrected with score 46
>CTRA-BTZ-01-000710 	gi|237805059|ref|YP_002889213.1| putative helicase [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 103 to 140 corrected with score 41
>CTRA-BTZ-01-000713 	gi|237805062|ref|YP_002889216.1| hypothetical protein CTB_7161 [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-BTZ-01-000745 	gi|237805094|ref|YP_002889248.1| histone H1--like developmental protein [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 4 to 125 corrected with score 110
>CTRA-BTZ-01-000745 	gi|237805094|ref|YP_002889248.1| histone H1--like developmental protein [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 64 to 117 corrected with score 42
>CTRA-BTZ-01-000752 	gi|237805101|ref|YP_002889255.1| transketolase [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-BTZ-01-000770 	gi|237805119|ref|YP_002889273.1| hypothetical protein CTB_7731 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 313 to 451 corrected with score 41
>CTRA-BTZ-01-000781 	gi|237805130|ref|YP_002889284.1| hypothetical protein CTB_7841 [Chlamydia trachomatis B/TZ1A828/OT]: P-rich region from 43 to 78 corrected with score 45
>CTRA-BTZ-01-000787 	gi|237805136|ref|YP_002889290.1| 50S ribosomal protein L34 [Chlamydia trachomatis B/TZ1A828/OT]: R-rich region from 2 to 40 corrected with score 41
>CTRA-BTZ-01-000789 	gi|237805138|ref|YP_002889292.1| 30S ribosomal protein S14 [Chlamydia trachomatis B/TZ1A828/OT]: K-rich region from 3 to 53 corrected with score 40
>CTRA-BTZ-01-000797 	gi|237805146|ref|YP_002889300.1| hypothetical protein CTB_8001 [Chlamydia trachomatis B/TZ1A828/OT]: A-rich region from 20 to 71 corrected with score 46
>CTRA-BTZ-01-000815 	gi|237805164|ref|YP_002889318.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 121 to 671 corrected with score 59
>CTRA-BTZ-01-000816 	gi|237805165|ref|YP_002889319.1| candidate inclusion membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 95 to 254 corrected with score 81
>CTRA-BTZ-01-000823 	gi|237805172|ref|YP_002889326.1| putative membrane transport protein [Chlamydia trachomatis B/TZ1A828/OT]: L-rich region from 141 to 186 corrected with score 50
>CTRA-BTZ-01-000828 	gi|237805177|ref|YP_002889331.1| metalloprotease-insulinase [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 468 to 508 corrected with score 42
>CTRA-BTZ-01-000853 	gi|237805202|ref|YP_002889356.1| hypothetical protein CTB_8571 [Chlamydia trachomatis B/TZ1A828/OT]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-BTZ-01-000855 	gi|237805204|ref|YP_002889358.1| putative integral membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 141 to 310 corrected with score 47
>CTRA-BTZ-01-000865 	gi|237805214|ref|YP_002889368.1| hypothetical protein CTB_8711 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 12 to 280 corrected with score 90
>CTRA-BTZ-01-000865 	gi|237805214|ref|YP_002889368.1| hypothetical protein CTB_8711 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 227 to 267 corrected with score 46
>CTRA-BTZ-01-000866 	gi|237805215|ref|YP_002889369.1| putative type III secretion translocator [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 2 to 233 corrected with score 99
>CTRA-BTZ-01-000868 	gi|237805217|ref|YP_002889371.1| hypothetical protein CTB_8741 [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 8 to 335 corrected with score 119
>CTRA-BTZ-01-000868 	gi|237805217|ref|YP_002889371.1| hypothetical protein CTB_8741 [Chlamydia trachomatis B/TZ1A828/OT]: E-rich region from 235 to 283 corrected with score 51
>CTRA-BTZ-01-000873 	gi|237805222|ref|YP_002889376.1| hypothetical protein CTB_8791 [Chlamydia trachomatis B/TZ1A828/OT]: P-rich region from 74 to 143 corrected with score 151
>CTRA-BTZ-01-000875 	gi|237805224|ref|YP_002889378.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 660 to 829 corrected with score 75
>CTRA-BTZ-01-000875 	gi|237805224|ref|YP_002889378.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 647 to 690 corrected with score 51
>CTRA-BTZ-01-000875 	gi|237805224|ref|YP_002889378.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 51 to 365 corrected with score 41
>CTRA-BTZ-01-000876 	gi|237805225|ref|YP_002889379.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 105 to 615 corrected with score 70
>CTRA-BTZ-01-000877 	gi|237805226|ref|YP_002889380.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 56 to 562 corrected with score 146
>CTRA-BTZ-01-000877 	gi|237805226|ref|YP_002889380.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: T-rich region from 519 to 638 corrected with score 44
>CTRA-BTZ-01-000879 	gi|237805228|ref|YP_002889382.1| polymorphic outer membrane protein [Chlamydia trachomatis B/TZ1A828/OT]: S-rich region from 107 to 780 corrected with score 117
>CTRA-DEC-01-000008 	gi|297749000|gb|ADI51546.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: S-rich region from 107 to 780 corrected with score 120
>CTRA-DEC-01-000009 	gi|297748999|gb|ADI51545.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: S-rich region from 59 to 657 corrected with score 142
>CTRA-DEC-01-000009 	gi|297748999|gb|ADI51545.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: P-rich region from 156 to 169 corrected with score 41
>CTRA-DEC-01-000010 	gi|297748998|gb|ADI51544.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: S-rich region from 106 to 616 corrected with score 69
>CTRA-DEC-01-000011 	gi|297748997|gb|ADI51543.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: S-rich region from 560 to 829 corrected with score 80
>CTRA-DEC-01-000011 	gi|297748997|gb|ADI51543.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: S-rich region from 61 to 328 corrected with score 46
>CTRA-DEC-01-000011 	gi|297748997|gb|ADI51543.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: T-rich region from 647 to 690 corrected with score 46
>CTRA-DEC-01-000012 	gi|297748996|gb|ADI51542.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: S-rich region from 342 to 599 corrected with score 61
>CTRA-DEC-01-000013 	gi|297748995|gb|ADI51541.1| Hypothetical protein CTDEC_0868 [Chlamydia trachomatis D-EC]: P-rich region from 74 to 143 corrected with score 151
>CTRA-DEC-01-000018 	gi|297748990|gb|ADI51536.1| Hypothetical protein CTDEC_0863 [Chlamydia trachomatis D-EC]: S-rich region from 8 to 335 corrected with score 119
>CTRA-DEC-01-000018 	gi|297748990|gb|ADI51536.1| Hypothetical protein CTDEC_0863 [Chlamydia trachomatis D-EC]: E-rich region from 235 to 283 corrected with score 51
>CTRA-DEC-01-000020 	gi|297748988|gb|ADI51534.1| Hypothetical protein CTDEC_0861 [Chlamydia trachomatis D-EC]: S-rich region from 2 to 233 corrected with score 99
>CTRA-DEC-01-000021 	gi|297748987|gb|ADI51533.1| Hypothetical protein CTDEC_0860 [Chlamydia trachomatis D-EC]: S-rich region from 12 to 280 corrected with score 97
>CTRA-DEC-01-000021 	gi|297748987|gb|ADI51533.1| Hypothetical protein CTDEC_0860 [Chlamydia trachomatis D-EC]: E-rich region from 227 to 267 corrected with score 46
>CTRA-DEC-01-000032 	gi|297748976|gb|ADI51522.1| Hypothetical protein CTDEC_0849 [Chlamydia trachomatis D-EC]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-DEC-01-000055 	gi|297748953|gb|ADI51499.1| Metalloprotease, insulinase family [Chlamydia trachomatis D-EC]: E-rich region from 468 to 508 corrected with score 42
>CTRA-DEC-01-000060 	gi|297748948|gb|ADI51494.1| Transporter [Chlamydia trachomatis D-EC]: L-rich region from 141 to 186 corrected with score 50
>CTRA-DEC-01-000067 	gi|297748941|gb|ADI51487.1| Hypothetical protein CTDEC_0813 [Chlamydia trachomatis D-EC]: E-rich region from 95 to 254 corrected with score 81
>CTRA-DEC-01-000068 	gi|297748940|gb|ADI51486.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: S-rich region from 128 to 678 corrected with score 60
>CTRA-DEC-01-000086 	gi|297748922|gb|ADI51468.1| hypothetical protein CTDEC_079401 [Chlamydia trachomatis D-EC]: A-rich region from 20 to 71 corrected with score 46
>CTRA-DEC-01-000093 	gi|297748915|gb|ADI51461.1| SSU ribosomal protein S14P [Chlamydia trachomatis D-EC]: K-rich region from 3 to 53 corrected with score 40
>CTRA-DEC-01-000095 	gi|297748913|gb|ADI51459.1| LSU ribosomal protein L34P [Chlamydia trachomatis D-EC]: R-rich region from 2 to 40 corrected with score 41
>CTRA-DEC-01-000101 	gi|297748907|gb|ADI51453.1| Hypothetical protein CTDEC_0779 [Chlamydia trachomatis D-EC]: P-rich region from 43 to 78 corrected with score 45
>CTRA-DEC-01-000110 	gi|297748898|gb|ADI51444.1| Hypothetical protein CTDEC_0768 [Chlamydia trachomatis D-EC]: E-rich region from 327 to 465 corrected with score 41
>CTRA-DEC-01-000128 	gi|297748880|gb|ADI51426.1| Transketolase [Chlamydia trachomatis D-EC]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-DEC-01-000166 	gi|297748842|gb|ADI51388.1| Hypothetical protein CTDEC_0711 [Chlamydia trachomatis D-EC]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-DEC-01-000169 	gi|297748839|gb|ADI51385.1| SWF/SNF family helicase [Chlamydia trachomatis D-EC]: E-rich region from 103 to 140 corrected with score 41
>CTRA-DEC-01-000170 	gi|297748838|gb|ADI51384.1| Trigger factor, ppiase [Chlamydia trachomatis D-EC]: E-rich region from 255 to 361 corrected with score 46
>CTRA-DEC-01-000174 	gi|297748834|gb|ADI51380.1| GTP-binding protein [Chlamydia trachomatis D-EC]: E-rich region from 169 to 212 corrected with score 40
>CTRA-DEC-01-000182 	gi|297748826|gb|ADI51372.1| Hypothetical protein CTDEC_0695 [Chlamydia trachomatis D-EC]: S-rich region from 2 to 77 corrected with score 41
>CTRA-DEC-01-000203 	gi|297748805|gb|ADI51351.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]: Q-rich region from 127 to 245 corrected with score 68
>CTRA-DEC-01-000206 	gi|297748802|gb|ADI51348.1| Hypothetical protein CTDEC_0671 [Chlamydia trachomatis D-EC]: E-rich region from 16 to 89 corrected with score 44
>CTRA-DEC-01-000206 	gi|297748802|gb|ADI51348.1| Hypothetical protein CTDEC_0671 [Chlamydia trachomatis D-EC]: E-rich region from 252 to 280 corrected with score 42
>CTRA-DEC-01-000207 	gi|297748801|gb|ADI51347.1| Hypothetical protein CTDEC_0670 [Chlamydia trachomatis D-EC]: E-rich region from 13 to 168 corrected with score 111
>CTRA-DEC-01-000213 	gi|297748795|gb|ADI51341.1| phosphopeptide binding protein [Chlamydia trachomatis D-EC]: E-rich region from 100 to 344 corrected with score 168
>CTRA-DEC-01-000213 	gi|297748795|gb|ADI51341.1| phosphopeptide binding protein [Chlamydia trachomatis D-EC]: S-rich region from 109 to 333 corrected with score 108
>CTRA-DEC-01-000216 	gi|297748792|gb|ADI51338.1| DNA gyrase subunit B [Chlamydia trachomatis D-EC]: K-rich region from 307 to 384 corrected with score 55
>CTRA-DEC-01-000235 	gi|297748773|gb|ADI51319.1| DNA topoisomerase I [Chlamydia trachomatis D-EC]: K-rich region from 757 to 794 corrected with score 50
>CTRA-DEC-01-000235 	gi|297748773|gb|ADI51319.1| DNA topoisomerase I [Chlamydia trachomatis D-EC]: E-rich region from 450 to 487 corrected with score 49
>CTRA-DEC-01-000236 	gi|297748772|gb|ADI51318.1| Hypothetical protein CTDEC_0642 [Chlamydia trachomatis D-EC]: F-rich region from 169 to 204 corrected with score 47
>CTRA-DEC-01-000243 	gi|297748765|gb|ADI51311.1| Hypothetical protein CTDEC_0635 [Chlamydia trachomatis D-EC]: K-rich region from 101 to 140 corrected with score 44
>CTRA-DEC-01-000256 	gi|297748752|gb|ADI51298.1| Hypothetical protein CTDEC_0622 [Chlamydia trachomatis D-EC]: S-rich region from 2 to 597 corrected with score 181
>CTRA-DEC-01-000257 	gi|297748751|gb|ADI51297.1| Hypothetical protein CTDEC_0621 [Chlamydia trachomatis D-EC]: Q-rich region from 40 to 121 corrected with score 44
>CTRA-DEC-01-000260 	gi|297748748|gb|ADI51294.1| Hypothetical protein CTDEC_0618 [Chlamydia trachomatis D-EC]: S-rich region from 4 to 88 corrected with score 44
>CTRA-DEC-01-000261 	gi|297748747|gb|ADI51293.1| SSU ribosomal protein S20P [Chlamydia trachomatis D-EC]: K-rich region from 8 to 49 corrected with score 47
>CTRA-DEC-01-000262 	gi|297748746|gb|ADI51292.1| Hypothetical membrane associated protein [Chlamydia trachomatis D-EC]: Q-rich region from 85 to 225 corrected with score 65
>CTRA-DEC-01-000277 	gi|297748731|gb|ADI51277.1| Soluble lytic murein transglycosylase-lke regulatory protein [Chlamydia trachomatis D-EC]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-DEC-01-000280 	gi|297748728|gb|ADI51274.1| Tola [Chlamydia trachomatis D-EC]: P-rich region from 47 to 101 corrected with score 60
>CTRA-DEC-01-000280 	gi|297748728|gb|ADI51274.1| Tola [Chlamydia trachomatis D-EC]: K-rich region from 30 to 115 corrected with score 42
>CTRA-DEC-01-000299 	gi|297748709|gb|ADI51255.1| Hypothetical protein CTDEC_0579 [Chlamydia trachomatis D-EC]: S-rich region from 20 to 436 corrected with score 197
>CTRA-DEC-01-000299 	gi|297748709|gb|ADI51255.1| Hypothetical protein CTDEC_0579 [Chlamydia trachomatis D-EC]: A-rich region from 231 to 313 corrected with score 54
>CTRA-DEC-01-000299 	gi|297748709|gb|ADI51255.1| Hypothetical protein CTDEC_0579 [Chlamydia trachomatis D-EC]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-DEC-01-000300 	gi|297748708|gb|ADI51254.1| Hypothetical protein CTDEC_0578 [Chlamydia trachomatis D-EC]: S-rich region from 2 to 308 corrected with score 124
>CTRA-DEC-01-000300 	gi|297748708|gb|ADI51254.1| Hypothetical protein CTDEC_0578 [Chlamydia trachomatis D-EC]: A-rich region from 278 to 487 corrected with score 94
>CTRA-DEC-01-000302 	gi|297748706|gb|ADI51252.1| hypothetical protein CTDEC_0576 [Chlamydia trachomatis D-EC]: K-rich region from 177 to 232 corrected with score 58
>CTRA-DEC-01-000306 	gi|297748702|gb|ADI51248.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]: S-rich region from 388 to 444 corrected with score 48
>CTRA-DEC-01-000314 	gi|297748694|gb|ADI51240.1| type III secretion inner membrane protein SctT [Chlamydia trachomatis D-EC]: M-rich region from 164 to 256 corrected with score 47
>CTRA-DEC-01-000316 	gi|297748692|gb|ADI51238.1| type III secretion inner membrane protein SctR [Chlamydia trachomatis D-EC]: L-rich region from 96 to 124 corrected with score 44
>CTRA-DEC-01-000316 	gi|297748692|gb|ADI51238.1| type III secretion inner membrane protein SctR [Chlamydia trachomatis D-EC]: M-rich region from 232 to 306 corrected with score 41
>CTRA-DEC-01-000319 	gi|297748689|gb|ADI51235.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia trachomatis D-EC]: E-rich region from 294 to 332 corrected with score 42
>CTRA-DEC-01-000334 	gi|297748674|gb|ADI51220.1| hypothetical protein CTDEC_0544 [Chlamydia trachomatis D-EC]: E-rich region from 221 to 252 corrected with score 43
>CTRA-DEC-01-000349 	gi|297748659|gb|ADI51205.1| Hypothetical protein CTDEC_0529 [Chlamydia trachomatis D-EC]: A-rich region from 45 to 216 corrected with score 57
>CTRA-DEC-01-000367 	gi|297748641|gb|ADI51187.1| LSU ribosomal protein L15P [Chlamydia trachomatis D-EC]: G-rich region from 21 to 55 corrected with score 42
>CTRA-DEC-01-000370 	gi|297748638|gb|ADI51184.1| SSU ribosomal protein S11P [Chlamydia trachomatis D-EC]: A-rich region from 48 to 107 corrected with score 43
>CTRA-DEC-01-000374 	gi|297748634|gb|ADI51180.1| Hypothetical protein CTDEC_0504 [Chlamydia trachomatis D-EC]: E-rich region from 138 to 288 corrected with score 64
>CTRA-DEC-01-000374 	gi|297748634|gb|ADI51180.1| Hypothetical protein CTDEC_0504 [Chlamydia trachomatis D-EC]: K-rich region from 138 to 164 corrected with score 49
>CTRA-DEC-01-000375 	gi|297748633|gb|ADI51179.1| Hypothetical protein CTDEC_0503 [Chlamydia trachomatis D-EC]: Q-rich region from 72 to 175 corrected with score 69
>CTRA-DEC-01-000387 	gi|297748621|gb|ADI51167.1| Transcription termination factor rho [Chlamydia trachomatis D-EC]: E-rich region from 2 to 44 corrected with score 41
>CTRA-DEC-01-000394 	gi|297748614|gb|ADI51160.1| Hypothetical protein CTDEC_0484 [Chlamydia trachomatis D-EC]: L-rich region from 20 to 81 corrected with score 50
>CTRA-DEC-01-000421 	gi|297748587|gb|ADI51133.1| Hypothetical protein CTDEC_0456 [Chlamydia trachomatis D-EC]: S-rich region from 2 to 845 corrected with score 372
>CTRA-DEC-01-000421 	gi|297748587|gb|ADI51133.1| Hypothetical protein CTDEC_0456 [Chlamydia trachomatis D-EC]: T-rich region from 11 to 116 corrected with score 80
>CTRA-DEC-01-000421 	gi|297748587|gb|ADI51133.1| Hypothetical protein CTDEC_0456 [Chlamydia trachomatis D-EC]: T-rich region from 536 to 581 corrected with score 55
>CTRA-DEC-01-000436 	gi|297748572|gb|ADI51118.1| Sulfur-rich protein [Chlamydia trachomatis D-EC]: V-rich region from 41 to 87 corrected with score 40
>CTRA-DEC-01-000439 	gi|297748569|gb|ADI51115.1| SSU ribosomal protein S12P [Chlamydia trachomatis D-EC]: K-rich region from 15 to 57 corrected with score 42
>CTRA-DEC-01-000461 	gi|297748547|gb|ADI51093.1| Metal transport system permease protein [Chlamydia trachomatis D-EC]: L-rich region from 186 to 273 corrected with score 56
>CTRA-DEC-01-000464 	gi|297748544|gb|ADI51090.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: S-rich region from 5 to 1353 corrected with score 517
>CTRA-DEC-01-000464 	gi|297748544|gb|ADI51090.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: E-rich region from 611 to 719 corrected with score 61
>CTRA-DEC-01-000464 	gi|297748544|gb|ADI51090.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: T-rich region from 1326 to 1350 corrected with score 53
>CTRA-DEC-01-000464 	gi|297748544|gb|ADI51090.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: N-rich region from 635 to 706 corrected with score 43
>CTRA-DEC-01-000465 	gi|297748543|gb|ADI51089.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: S-rich region from 34 to 1338 corrected with score 495
>CTRA-DEC-01-000465 	gi|297748543|gb|ADI51089.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: A-rich region from 803 to 843 corrected with score 47
>CTRA-DEC-01-000465 	gi|297748543|gb|ADI51089.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-EC]: T-rich region from 38 to 102 corrected with score 47
>CTRA-DEC-01-000480 	gi|297748528|gb|ADI51074.1| Zn binding protein [Chlamydia trachomatis D-EC]: E-rich region from 25 to 174 corrected with score 66
>CTRA-DEC-01-000481 	gi|297748527|gb|ADI51073.1| Exoribonuclease II [Chlamydia trachomatis D-EC]: K-rich region from 653 to 694 corrected with score 80
>CTRA-DEC-01-000482 	gi|297748526|gb|ADI51072.1| DnaK [Chlamydia trachomatis D-EC]: S-rich region from 578 to 650 corrected with score 56
>CTRA-DEC-01-000482 	gi|297748526|gb|ADI51072.1| DnaK [Chlamydia trachomatis D-EC]: E-rich region from 496 to 580 corrected with score 52
>CTRA-DEC-01-000483 	gi|297748525|gb|ADI51071.1| Grpe [Chlamydia trachomatis D-EC]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-DEC-01-000486 	gi|297748522|gb|ADI51068.1| Hypothetical protein CTDEC_0392 [Chlamydia trachomatis D-EC]: S-rich region from 2 to 133 corrected with score 45
>CTRA-DEC-01-000499 	gi|297748509|gb|ADI51055.1| HflX [Chlamydia trachomatis D-EC]: R-rich region from 193 to 225 corrected with score 42
>CTRA-DEC-01-000506 	gi|297748502|gb|ADI51048.1| Hypothetical protein CTDEC_0372 [Chlamydia trachomatis D-EC]: H-rich region from 29 to 44 corrected with score 46
>CTRA-DEC-01-000518 	gi|297748490|gb|ADI51036.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-EC]: E-rich region from 41 to 208 corrected with score 64
>CTRA-DEC-01-000526 	gi|297748482|gb|ADI51028.1| Hypothetical protein CTDEC_035101 [Chlamydia trachomatis D-EC]: L-rich region from 1 to 25 corrected with score 41
>CTRA-DEC-01-000537 	gi|297748471|gb|ADI51017.1| DnaJ [Chlamydia trachomatis D-EC]: G-rich region from 67 to 134 corrected with score 74
>CTRA-DEC-01-000544 	gi|297748464|gb|ADI51010.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-EC]: S-rich region from 375 to 443 corrected with score 43
>CTRA-DEC-01-000545 	gi|297748463|gb|ADI51009.1| Excinuclease ABC subunit A [Chlamydia trachomatis D-EC]: P-rich region from 918 to 934 corrected with score 40
>CTRA-DEC-01-000553 	gi|297748455|gb|ADI51001.1| Hypothetical protein CTDEC_0326 [Chlamydia trachomatis D-EC]: T-rich region from 479 to 532 corrected with score 55
>CTRA-DEC-01-000553 	gi|297748455|gb|ADI51001.1| Hypothetical protein CTDEC_0326 [Chlamydia trachomatis D-EC]: D-rich region from 30 to 39 corrected with score 40
>CTRA-DEC-01-000563 	gi|297748445|gb|ADI50991.1| LSU ribosomal protein L12P (L7/L12) [Chlamydia trachomatis D-EC]: A-rich region from 60 to 82 corrected with score 45
>CTRA-DEC-01-000569 	gi|297748439|gb|ADI50985.1| V-type ATP synthase subunit E [Chlamydia trachomatis D-EC]: E-rich region from 25 to 77 corrected with score 40
>CTRA-DEC-01-000590 	gi|297748418|gb|ADI50964.1| Hypothetical protein CTDEC_0289 [Chlamydia trachomatis D-EC]: K-rich region from 70 to 292 corrected with score 86
>CTRA-DEC-01-000590 	gi|297748418|gb|ADI50964.1| Hypothetical protein CTDEC_0289 [Chlamydia trachomatis D-EC]: A-rich region from 176 to 300 corrected with score 43
>CTRA-DEC-01-000591 	gi|297748417|gb|ADI50963.1| Hypothetical protein CTDEC_0288 [Chlamydia trachomatis D-EC]: A-rich region from 32 to 93 corrected with score 55
>CTRA-DEC-01-000593 	gi|297748415|gb|ADI50961.1| Negative regulator of genetic competence clpC/mecB [Chlamydia trachomatis D-EC]: E-rich region from 443 to 500 corrected with score 57
>CTRA-DEC-01-000593 	gi|297748415|gb|ADI50961.1| Negative regulator of genetic competence clpC/mecB [Chlamydia trachomatis D-EC]: S-rich region from 153 to 171 corrected with score 44
>CTRA-DEC-01-000648 	gi|297748360|gb|ADI50906.1| Proton/sodium-glutamate symport protein [Chlamydia trachomatis D-EC]: L-rich region from 16 to 105 corrected with score 41
>CTRA-DEC-01-000649 	gi|297748359|gb|ADI50905.1| Hypothetical membrane associated protein [Chlamydia trachomatis D-EC]: A-rich region from 8 to 74 corrected with score 44
>CTRA-DEC-01-000650 	gi|297748358|gb|ADI50904.1| Hypothetical membrane associated protein [Chlamydia trachomatis D-EC]: V-rich region from 37 to 76 corrected with score 40
>CTRA-DEC-01-000655 	gi|297748353|gb|ADI50899.1| Hypothetical protein CTDEC_0223 [Chlamydia trachomatis D-EC]: D-rich region from 248 to 262 corrected with score 41
>CTRA-DEC-01-000659 	gi|297748349|gb|ADI50895.1| 4-hydroxybenzoate polyprenyltransferase [Chlamydia trachomatis D-EC]: L-rich region from 90 to 162 corrected with score 44
>CTRA-DEC-01-000664 	gi|297748344|gb|ADI50890.1| Hypothetical membrane spanning protein [Chlamydia trachomatis D-EC]: V-rich region from 37 to 98 corrected with score 43
>CTRA-DEC-01-000713 	gi|297748295|gb|ADI50841.1| Adherence factor [Chlamydia trachomatis D-EC]: K-rich region from 29 to 142 corrected with score 57
>CTRA-DEC-01-000714 	gi|297748294|gb|ADI50840.1| Adherence factor [Chlamydia trachomatis D-EC]: T-rich region from 6 to 133 corrected with score 44
>CTRA-DEC-01-000715 	gi|297748293|gb|ADI50839.1| Hypothetical membrane associated protein [Chlamydia trachomatis D-EC]: L-rich region from 34 to 64 corrected with score 41
>CTRA-DEC-01-000722 	gi|297748286|gb|ADI50832.1| Phosphatidylcholine-hydrolyzing phospholipase D (PLD) family [Chlamydia trachomatis D-EC]: S-rich region from 2 to 100 corrected with score 59
>CTRA-DEC-01-000724 	gi|297748284|gb|ADI50830.1| Phosphatidylcholine-hydrolyzing phospholipase D (PLD) family [Chlamydia trachomatis D-EC]: H-rich region from 4 to 30 corrected with score 46
>CTRA-DEC-01-000725 	gi|297748283|gb|ADI50829.1| MAC/perforin family protein [Chlamydia trachomatis D-EC]: S-rich region from 406 to 572 corrected with score 92
>CTRA-DEC-01-000731 	gi|297748277|gb|ADI50823.1| Hypothetical membrane spanning protein [Chlamydia trachomatis D-EC]: Q-rich region from 961 to 1155 corrected with score 43
>CTRA-DEC-01-000734 	gi|297748274|gb|ADI50820.1| Hypothetical protein CTDEC_0144 [Chlamydia trachomatis D-EC]: T-rich region from 2 to 62 corrected with score 46
>CTRA-DEC-01-000753 	gi|297748255|gb|ADI50801.1| SSU ribosomal protein S9P [Chlamydia trachomatis D-EC]: K-rich region from 92 to 133 corrected with score 49
>CTRA-DEC-01-000761 	gi|297748247|gb|ADI50793.1| Inclusion membrane protein G [Chlamydia trachomatis D-EC]: S-rich region from 89 to 166 corrected with score 53
>CTRA-DEC-01-000762 	gi|297748246|gb|ADI50792.1| Inclusion membrane protein F [Chlamydia trachomatis D-EC]: A-rich region from 29 to 92 corrected with score 41
>CTRA-DEC-01-000766 	gi|297748242|gb|ADI50788.1| Clpb [Chlamydia trachomatis D-EC]: E-rich region from 412 to 534 corrected with score 58
>CTRA-DEC-01-000774 	gi|297748234|gb|ADI50780.1| Hypothetical protein CTDEC_0105 [Chlamydia trachomatis D-EC]: S-rich region from 2 to 229 corrected with score 104
>CTRA-DEC-01-000774 	gi|297748234|gb|ADI50780.1| Hypothetical protein CTDEC_0105 [Chlamydia trachomatis D-EC]: C-rich region from 308 to 350 corrected with score 47
>CTRA-DEC-01-000783 	gi|297748225|gb|ADI50771.1| Bacterial Protein Translation Initiation Factor 2 (IF-2) [Chlamydia trachomatis D-EC]: S-rich region from 39 to 292 corrected with score 104
>CTRA-DEC-01-000783 	gi|297748225|gb|ADI50771.1| Bacterial Protein Translation Initiation Factor 2 (IF-2) [Chlamydia trachomatis D-EC]: K-rich region from 2 to 63 corrected with score 43
>CTRA-DEC-01-000783 	gi|297748225|gb|ADI50771.1| Bacterial Protein Translation Initiation Factor 2 (IF-2) [Chlamydia trachomatis D-EC]: E-rich region from 129 to 162 corrected with score 40
>CTRA-DEC-01-000789 	gi|297748219|gb|ADI50765.1| type III secretion inner membrane protein SctV [Chlamydia trachomatis D-EC]: L-rich region from 27 to 91 corrected with score 51
>CTRA-DEC-01-000790 	gi|297748218|gb|ADI50764.1| type III secreted protein SctW [Chlamydia trachomatis D-EC]: S-rich region from 2 to 233 corrected with score 48
>CTRA-DEC-01-000790 	gi|297748218|gb|ADI50764.1| type III secreted protein SctW [Chlamydia trachomatis D-EC]: P-rich region from 385 to 421 corrected with score 47
>CTRA-DEC-01-000797 	gi|297748211|gb|ADI50757.1| Hypothetical protein CTDEC_0082 [Chlamydia trachomatis D-EC]: S-rich region from 2 to 387 corrected with score 88
>CTRA-DEC-01-000797 	gi|297748211|gb|ADI50757.1| Hypothetical protein CTDEC_0082 [Chlamydia trachomatis D-EC]: D-rich region from 526 to 560 corrected with score 43
>CTRA-DEC-01-000813 	gi|297748195|gb|ADI50741.1| ADP,ATP carrier protein [Chlamydia trachomatis D-EC]: A-rich region from 435 to 523 corrected with score 50
>CTRA-DEC-01-000820 	gi|297748188|gb|ADI50734.1| Hypothetical membrane spanning protein [Chlamydia trachomatis D-EC]: P-rich region from 78 to 119 corrected with score 66
>CTRA-DEC-01-000825 	gi|297748183|gb|ADI50729.1| Hypothetical protein CTDEC_0053 [Chlamydia trachomatis D-EC]: E-rich region from 44 to 144 corrected with score 51
>CTRA-DEC-01-000827 	gi|297748181|gb|ADI50727.1| Hypothetical protein CTDEC_0051 [Chlamydia trachomatis D-EC]: S-rich region from 182 to 519 corrected with score 140
>CTRA-DEC-01-000827 	gi|297748181|gb|ADI50727.1| Hypothetical protein CTDEC_0051 [Chlamydia trachomatis D-EC]: T-rich region from 377 to 501 corrected with score 79
>CTRA-DEC-01-000827 	gi|297748181|gb|ADI50727.1| Hypothetical protein CTDEC_0051 [Chlamydia trachomatis D-EC]: E-rich region from 102 to 155 corrected with score 53
>CTRA-DEC-01-000828 	gi|297748180|gb|ADI50726.1| Hypothetical protein CTDEC_0050 [Chlamydia trachomatis D-EC]: S-rich region from 102 to 535 corrected with score 140
>CTRA-DEC-01-000828 	gi|297748180|gb|ADI50726.1| Hypothetical protein CTDEC_0050 [Chlamydia trachomatis D-EC]: P-rich region from 390 to 415 corrected with score 67
>CTRA-DEC-01-000828 	gi|297748180|gb|ADI50726.1| Hypothetical protein CTDEC_0050 [Chlamydia trachomatis D-EC]: P-rich region from 240 to 292 corrected with score 61
>CTRA-DEC-01-000828 	gi|297748180|gb|ADI50726.1| Hypothetical protein CTDEC_0050 [Chlamydia trachomatis D-EC]: T-rich region from 376 to 454 corrected with score 55
>CTRA-DEC-01-000829 	gi|297748179|gb|ADI50725.1| Hypothetical protein CTDEC_0049 [Chlamydia trachomatis D-EC]: S-rich region from 168 to 479 corrected with score 75
>CTRA-DEC-01-000872 	gi|297748136|gb|ADI50682.1| Hypothetical protein CTDEC_0005 [Chlamydia trachomatis D-EC]: S-rich region from 232 to 361 corrected with score 138
>CTRA-DEC-01-000877 	gi|297748131|gb|ADI50677.1| Hypothetical protein CTDEC_0875 [Chlamydia trachomatis D-EC]: S-rich region from 7 to 141 corrected with score 69
>CTRA-DLC-01-000008 	gi|297749880|gb|ADI52558.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: S-rich region from 107 to 780 corrected with score 120
>CTRA-DLC-01-000009 	gi|297749879|gb|ADI52557.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: S-rich region from 59 to 657 corrected with score 142
>CTRA-DLC-01-000009 	gi|297749879|gb|ADI52557.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: P-rich region from 156 to 169 corrected with score 41
>CTRA-DLC-01-000010 	gi|297749878|gb|ADI52556.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: S-rich region from 106 to 616 corrected with score 69
>CTRA-DLC-01-000011 	gi|297749877|gb|ADI52555.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: S-rich region from 560 to 829 corrected with score 80
>CTRA-DLC-01-000011 	gi|297749877|gb|ADI52555.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: S-rich region from 61 to 328 corrected with score 46
>CTRA-DLC-01-000011 	gi|297749877|gb|ADI52555.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: T-rich region from 647 to 690 corrected with score 46
>CTRA-DLC-01-000012 	gi|297749876|gb|ADI52554.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: S-rich region from 342 to 599 corrected with score 61
>CTRA-DLC-01-000013 	gi|297749875|gb|ADI52553.1| Hypothetical protein CTDLC_0868 [Chlamydia trachomatis D-LC]: P-rich region from 74 to 143 corrected with score 151
>CTRA-DLC-01-000018 	gi|297749870|gb|ADI52548.1| Hypothetical protein CTDLC_0863 [Chlamydia trachomatis D-LC]: S-rich region from 8 to 335 corrected with score 119
>CTRA-DLC-01-000018 	gi|297749870|gb|ADI52548.1| Hypothetical protein CTDLC_0863 [Chlamydia trachomatis D-LC]: E-rich region from 235 to 283 corrected with score 51
>CTRA-DLC-01-000020 	gi|297749868|gb|ADI52546.1| Hypothetical protein CTDLC_0861 [Chlamydia trachomatis D-LC]: S-rich region from 2 to 233 corrected with score 99
>CTRA-DLC-01-000021 	gi|297749867|gb|ADI52545.1| Hypothetical protein CTDLC_0860 [Chlamydia trachomatis D-LC]: S-rich region from 12 to 280 corrected with score 97
>CTRA-DLC-01-000021 	gi|297749867|gb|ADI52545.1| Hypothetical protein CTDLC_0860 [Chlamydia trachomatis D-LC]: E-rich region from 227 to 267 corrected with score 46
>CTRA-DLC-01-000032 	gi|297749856|gb|ADI52534.1| Hypothetical protein CTDLC_0849 [Chlamydia trachomatis D-LC]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-DLC-01-000055 	gi|297749833|gb|ADI52511.1| Metalloprotease, insulinase family [Chlamydia trachomatis D-LC]: E-rich region from 468 to 508 corrected with score 42
>CTRA-DLC-01-000060 	gi|297749828|gb|ADI52506.1| Transporter [Chlamydia trachomatis D-LC]: L-rich region from 141 to 186 corrected with score 50
>CTRA-DLC-01-000067 	gi|297749821|gb|ADI52499.1| Hypothetical protein CTDLC_0813 [Chlamydia trachomatis D-LC]: E-rich region from 95 to 254 corrected with score 81
>CTRA-DLC-01-000068 	gi|297749820|gb|ADI52498.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: S-rich region from 128 to 678 corrected with score 60
>CTRA-DLC-01-000086 	gi|297749802|gb|ADI52480.1| hypothetical protein CTDLC_079401 [Chlamydia trachomatis D-LC]: A-rich region from 20 to 71 corrected with score 46
>CTRA-DLC-01-000093 	gi|297749795|gb|ADI52473.1| SSU ribosomal protein S14P [Chlamydia trachomatis D-LC]: K-rich region from 3 to 53 corrected with score 40
>CTRA-DLC-01-000095 	gi|297749793|gb|ADI52471.1| LSU ribosomal protein L34P [Chlamydia trachomatis D-LC]: R-rich region from 2 to 40 corrected with score 41
>CTRA-DLC-01-000101 	gi|297749787|gb|ADI52465.1| Hypothetical protein CTDLC_0779 [Chlamydia trachomatis D-LC]: P-rich region from 43 to 78 corrected with score 45
>CTRA-DLC-01-000110 	gi|297749778|gb|ADI52456.1| Hypothetical protein CTDLC_0768 [Chlamydia trachomatis D-LC]: E-rich region from 327 to 465 corrected with score 41
>CTRA-DLC-01-000128 	gi|297749760|gb|ADI52438.1| Transketolase [Chlamydia trachomatis D-LC]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-DLC-01-000166 	gi|297749722|gb|ADI52400.1| Hypothetical protein CTDLC_0711 [Chlamydia trachomatis D-LC]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-DLC-01-000169 	gi|297749719|gb|ADI52397.1| SWF/SNF family helicase [Chlamydia trachomatis D-LC]: E-rich region from 103 to 140 corrected with score 41
>CTRA-DLC-01-000170 	gi|297749718|gb|ADI52396.1| Trigger factor, ppiase [Chlamydia trachomatis D-LC]: E-rich region from 255 to 361 corrected with score 46
>CTRA-DLC-01-000174 	gi|297749714|gb|ADI52392.1| GTP-binding protein [Chlamydia trachomatis D-LC]: E-rich region from 169 to 212 corrected with score 40
>CTRA-DLC-01-000182 	gi|297749706|gb|ADI52384.1| Hypothetical protein CTDLC_0695 [Chlamydia trachomatis D-LC]: S-rich region from 2 to 77 corrected with score 41
>CTRA-DLC-01-000203 	gi|297749685|gb|ADI52363.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]: Q-rich region from 127 to 245 corrected with score 68
>CTRA-DLC-01-000206 	gi|297749682|gb|ADI52360.1| Hypothetical protein CTDLC_0671 [Chlamydia trachomatis D-LC]: E-rich region from 16 to 89 corrected with score 44
>CTRA-DLC-01-000206 	gi|297749682|gb|ADI52360.1| Hypothetical protein CTDLC_0671 [Chlamydia trachomatis D-LC]: E-rich region from 252 to 280 corrected with score 42
>CTRA-DLC-01-000207 	gi|297749681|gb|ADI52359.1| Hypothetical protein CTDLC_0670 [Chlamydia trachomatis D-LC]: E-rich region from 13 to 168 corrected with score 111
>CTRA-DLC-01-000213 	gi|297749675|gb|ADI52353.1| phosphopeptide binding protein [Chlamydia trachomatis D-LC]: E-rich region from 100 to 344 corrected with score 168
>CTRA-DLC-01-000213 	gi|297749675|gb|ADI52353.1| phosphopeptide binding protein [Chlamydia trachomatis D-LC]: S-rich region from 109 to 333 corrected with score 108
>CTRA-DLC-01-000216 	gi|297749672|gb|ADI52350.1| DNA gyrase subunit B [Chlamydia trachomatis D-LC]: K-rich region from 307 to 384 corrected with score 55
>CTRA-DLC-01-000235 	gi|297749653|gb|ADI52331.1| DNA topoisomerase I [Chlamydia trachomatis D-LC]: K-rich region from 757 to 794 corrected with score 50
>CTRA-DLC-01-000235 	gi|297749653|gb|ADI52331.1| DNA topoisomerase I [Chlamydia trachomatis D-LC]: E-rich region from 450 to 487 corrected with score 49
>CTRA-DLC-01-000236 	gi|297749652|gb|ADI52330.1| Hypothetical protein CTDLC_0642 [Chlamydia trachomatis D-LC]: F-rich region from 169 to 204 corrected with score 47
>CTRA-DLC-01-000243 	gi|297749645|gb|ADI52323.1| Hypothetical protein CTDLC_0635 [Chlamydia trachomatis D-LC]: K-rich region from 101 to 140 corrected with score 44
>CTRA-DLC-01-000256 	gi|297749632|gb|ADI52310.1| Hypothetical protein CTDLC_0622 [Chlamydia trachomatis D-LC]: S-rich region from 2 to 597 corrected with score 181
>CTRA-DLC-01-000257 	gi|297749631|gb|ADI52309.1| Hypothetical protein CTDLC_0621 [Chlamydia trachomatis D-LC]: Q-rich region from 40 to 121 corrected with score 44
>CTRA-DLC-01-000260 	gi|297749628|gb|ADI52306.1| Hypothetical protein CTDLC_0618 [Chlamydia trachomatis D-LC]: S-rich region from 4 to 88 corrected with score 44
>CTRA-DLC-01-000261 	gi|297749627|gb|ADI52305.1| SSU ribosomal protein S20P [Chlamydia trachomatis D-LC]: K-rich region from 8 to 49 corrected with score 47
>CTRA-DLC-01-000262 	gi|297749626|gb|ADI52304.1| Hypothetical membrane associated protein [Chlamydia trachomatis D-LC]: Q-rich region from 85 to 225 corrected with score 65
>CTRA-DLC-01-000277 	gi|297749611|gb|ADI52289.1| Soluble lytic murein transglycosylase-like regulatory protein [Chlamydia trachomatis D-LC]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-DLC-01-000280 	gi|297749608|gb|ADI52286.1| Tola [Chlamydia trachomatis D-LC]: P-rich region from 47 to 101 corrected with score 60
>CTRA-DLC-01-000280 	gi|297749608|gb|ADI52286.1| Tola [Chlamydia trachomatis D-LC]: K-rich region from 30 to 115 corrected with score 42
>CTRA-DLC-01-000299 	gi|297749589|gb|ADI52267.1| Hypothetical protein CTDLC_0579 [Chlamydia trachomatis D-LC]: S-rich region from 20 to 436 corrected with score 197
>CTRA-DLC-01-000299 	gi|297749589|gb|ADI52267.1| Hypothetical protein CTDLC_0579 [Chlamydia trachomatis D-LC]: A-rich region from 231 to 313 corrected with score 54
>CTRA-DLC-01-000299 	gi|297749589|gb|ADI52267.1| Hypothetical protein CTDLC_0579 [Chlamydia trachomatis D-LC]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-DLC-01-000300 	gi|297749588|gb|ADI52266.1| Hypothetical protein CTDLC_0578 [Chlamydia trachomatis D-LC]: S-rich region from 2 to 308 corrected with score 124
>CTRA-DLC-01-000300 	gi|297749588|gb|ADI52266.1| Hypothetical protein CTDLC_0578 [Chlamydia trachomatis D-LC]: A-rich region from 278 to 487 corrected with score 94
>CTRA-DLC-01-000302 	gi|297749586|gb|ADI52264.1| hypothetical protein CTDLC_0576 [Chlamydia trachomatis D-LC]: K-rich region from 177 to 232 corrected with score 58
>CTRA-DLC-01-000306 	gi|297749582|gb|ADI52260.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]: S-rich region from 388 to 444 corrected with score 48
>CTRA-DLC-01-000314 	gi|297749574|gb|ADI52252.1| type III secretion inner membrane protein sctT [Chlamydia trachomatis D-LC]: M-rich region from 164 to 256 corrected with score 47
>CTRA-DLC-01-000316 	gi|297749572|gb|ADI52250.1| type III secretion inner membrane protein SctR [Chlamydia trachomatis D-LC]: L-rich region from 96 to 124 corrected with score 44
>CTRA-DLC-01-000316 	gi|297749572|gb|ADI52250.1| type III secretion inner membrane protein SctR [Chlamydia trachomatis D-LC]: M-rich region from 232 to 306 corrected with score 41
>CTRA-DLC-01-000319 	gi|297749569|gb|ADI52247.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia trachomatis D-LC]: E-rich region from 294 to 332 corrected with score 42
>CTRA-DLC-01-000334 	gi|297749554|gb|ADI52232.1| hypothetical protein CTDLC_0544 [Chlamydia trachomatis D-LC]: E-rich region from 221 to 252 corrected with score 43
>CTRA-DLC-01-000349 	gi|297749539|gb|ADI52217.1| Hypothetical protein CTDLC_0529 [Chlamydia trachomatis D-LC]: A-rich region from 45 to 216 corrected with score 57
>CTRA-DLC-01-000367 	gi|297749521|gb|ADI52199.1| LSU ribosomal protein L15P [Chlamydia trachomatis D-LC]: G-rich region from 21 to 55 corrected with score 42
>CTRA-DLC-01-000370 	gi|297749518|gb|ADI52196.1| SSU ribosomal protein S11P [Chlamydia trachomatis D-LC]: A-rich region from 48 to 107 corrected with score 43
>CTRA-DLC-01-000374 	gi|297749514|gb|ADI52192.1| Hypothetical protein CTDLC_0504 [Chlamydia trachomatis D-LC]: E-rich region from 138 to 288 corrected with score 64
>CTRA-DLC-01-000374 	gi|297749514|gb|ADI52192.1| Hypothetical protein CTDLC_0504 [Chlamydia trachomatis D-LC]: K-rich region from 138 to 164 corrected with score 49
>CTRA-DLC-01-000375 	gi|297749513|gb|ADI52191.1| Hypothetical protein CTDLC_0503 [Chlamydia trachomatis D-LC]: Q-rich region from 72 to 175 corrected with score 69
>CTRA-DLC-01-000387 	gi|297749501|gb|ADI52179.1| Transcription termination factor rho [Chlamydia trachomatis D-LC]: E-rich region from 2 to 44 corrected with score 41
>CTRA-DLC-01-000394 	gi|297749494|gb|ADI52172.1| Hypothetical protein CTDLC_0484 [Chlamydia trachomatis D-LC]: L-rich region from 20 to 81 corrected with score 50
>CTRA-DLC-01-000421 	gi|297749467|gb|ADI52145.1| Hypothetical protein CTDLC_0456 [Chlamydia trachomatis D-LC]: S-rich region from 2 to 845 corrected with score 372
>CTRA-DLC-01-000421 	gi|297749467|gb|ADI52145.1| Hypothetical protein CTDLC_0456 [Chlamydia trachomatis D-LC]: T-rich region from 11 to 116 corrected with score 80
>CTRA-DLC-01-000421 	gi|297749467|gb|ADI52145.1| Hypothetical protein CTDLC_0456 [Chlamydia trachomatis D-LC]: T-rich region from 536 to 581 corrected with score 55
>CTRA-DLC-01-000436 	gi|297749452|gb|ADI52130.1| Sulfur-rich protein [Chlamydia trachomatis D-LC]: V-rich region from 41 to 87 corrected with score 40
>CTRA-DLC-01-000439 	gi|297749449|gb|ADI52127.1| SSU ribosomal protein S12P [Chlamydia trachomatis D-LC]: K-rich region from 15 to 57 corrected with score 42
>CTRA-DLC-01-000461 	gi|297749427|gb|ADI52105.1| Metal transport system permease protein [Chlamydia trachomatis D-LC]: L-rich region from 186 to 273 corrected with score 56
>CTRA-DLC-01-000464 	gi|297749424|gb|ADI52102.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: S-rich region from 5 to 1353 corrected with score 517
>CTRA-DLC-01-000464 	gi|297749424|gb|ADI52102.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: E-rich region from 611 to 719 corrected with score 61
>CTRA-DLC-01-000464 	gi|297749424|gb|ADI52102.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: T-rich region from 1326 to 1350 corrected with score 53
>CTRA-DLC-01-000464 	gi|297749424|gb|ADI52102.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: N-rich region from 635 to 706 corrected with score 43
>CTRA-DLC-01-000465 	gi|297749423|gb|ADI52101.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: S-rich region from 34 to 1338 corrected with score 495
>CTRA-DLC-01-000465 	gi|297749423|gb|ADI52101.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: A-rich region from 803 to 843 corrected with score 47
>CTRA-DLC-01-000465 	gi|297749423|gb|ADI52101.1| Polymorphic outer membrane protein [Chlamydia trachomatis D-LC]: T-rich region from 38 to 102 corrected with score 47
>CTRA-DLC-01-000480 	gi|297749408|gb|ADI52086.1| Zn binding protein [Chlamydia trachomatis D-LC]: E-rich region from 25 to 174 corrected with score 66
>CTRA-DLC-01-000481 	gi|297749407|gb|ADI52085.1| Exoribonuclease II [Chlamydia trachomatis D-LC]: K-rich region from 653 to 694 corrected with score 80
>CTRA-DLC-01-000482 	gi|297749406|gb|ADI52084.1| DnaK [Chlamydia trachomatis D-LC]: S-rich region from 578 to 650 corrected with score 56
>CTRA-DLC-01-000482 	gi|297749406|gb|ADI52084.1| DnaK [Chlamydia trachomatis D-LC]: E-rich region from 496 to 580 corrected with score 52
>CTRA-DLC-01-000483 	gi|297749405|gb|ADI52083.1| Grpe [Chlamydia trachomatis D-LC]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-DLC-01-000486 	gi|297749402|gb|ADI52080.1| Hypothetical protein CTDLC_0392 [Chlamydia trachomatis D-LC]: S-rich region from 2 to 133 corrected with score 45
>CTRA-DLC-01-000499 	gi|297749389|gb|ADI52067.1| HflX [Chlamydia trachomatis D-LC]: R-rich region from 193 to 225 corrected with score 42
>CTRA-DLC-01-000506 	gi|297749382|gb|ADI52060.1| Hypothetical protein CTDLC_0372 [Chlamydia trachomatis D-LC]: H-rich region from 29 to 44 corrected with score 46
>CTRA-DLC-01-000518 	gi|297749370|gb|ADI52048.1| Hypothetical cytosolic protein [Chlamydia trachomatis D-LC]: E-rich region from 41 to 208 corrected with score 64
>CTRA-DLC-01-000526 	gi|297749362|gb|ADI52040.1| Hypothetical protein CTDLC_035101 [Chlamydia trachomatis D-LC]: L-rich region from 1 to 25 corrected with score 41
>CTRA-DLC-01-000537 	gi|297749351|gb|ADI52029.1| DnaJ [Chlamydia trachomatis D-LC]: G-rich region from 67 to 134 corrected with score 74
>CTRA-DLC-01-000544 	gi|297749344|gb|ADI52022.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-LC]: S-rich region from 375 to 443 corrected with score 43
>CTRA-DLC-01-000545 	gi|297749343|gb|ADI52021.1| Excinuclease ABC subunit A [Chlamydia trachomatis D-LC]: P-rich region from 918 to 934 corrected with score 40
>CTRA-DLC-01-000553 	gi|297749335|gb|ADI52013.1| Hypothetical protein CTDLC_0326 [Chlamydia trachomatis D-LC]: T-rich region from 479 to 532 corrected with score 55
>CTRA-DLC-01-000553 	gi|297749335|gb|ADI52013.1| Hypothetical protein CTDLC_0326 [Chlamydia trachomatis D-LC]: D-rich region from 30 to 39 corrected with score 40
>CTRA-DLC-01-000563 	gi|297749325|gb|ADI52003.1| LSU ribosomal protein L12P (L7/L12) [Chlamydia trachomatis D-LC]: A-rich region from 60 to 82 corrected with score 45
>CTRA-DLC-01-000569 	gi|297749319|gb|ADI51997.1| V-type ATP synthase subunit E [Chlamydia trachomatis D-LC]: E-rich region from 25 to 77 corrected with score 40
>CTRA-DLC-01-000590 	gi|297749298|gb|ADI51976.1| Hypothetical protein CTDLC_0289 [Chlamydia trachomatis D-LC]: K-rich region from 70 to 292 corrected with score 86
>CTRA-DLC-01-000590 	gi|297749298|gb|ADI51976.1| Hypothetical protein CTDLC_0289 [Chlamydia trachomatis D-LC]: A-rich region from 176 to 300 corrected with score 43
>CTRA-DLC-01-000591 	gi|297749297|gb|ADI51975.1| Hypothetical protein CTDLC_0288 [Chlamydia trachomatis D-LC]: A-rich region from 32 to 93 corrected with score 55
>CTRA-DLC-01-000593 	gi|297749295|gb|ADI51973.1| Negative regulator of genetic competence clpC/mecB [Chlamydia trachomatis D-LC]: E-rich region from 443 to 500 corrected with score 57
>CTRA-DLC-01-000593 	gi|297749295|gb|ADI51973.1| Negative regulator of genetic competence clpC/mecB [Chlamydia trachomatis D-LC]: S-rich region from 153 to 171 corrected with score 44
>CTRA-DLC-01-000648 	gi|297749240|gb|ADI51918.1| Proton/sodium-glutamate symport protein [Chlamydia trachomatis D-LC]: L-rich region from 16 to 105 corrected with score 41
>CTRA-DLC-01-000649 	gi|297749239|gb|ADI51917.1| Hypothetical membrane associated protein [Chlamydia trachomatis D-LC]: A-rich region from 8 to 74 corrected with score 44
>CTRA-DLC-01-000650 	gi|297749238|gb|ADI51916.1| Hypothetical membrane associated protein [Chlamydia trachomatis D-LC]: V-rich region from 37 to 76 corrected with score 40
>CTRA-DLC-01-000655 	gi|297749233|gb|ADI51911.1| Hypothetical protein CTDLC_0223 [Chlamydia trachomatis D-LC]: D-rich region from 248 to 262 corrected with score 41
>CTRA-DLC-01-000659 	gi|297749229|gb|ADI51907.1| 4-hydroxybenzoate polyprenyltransferase [Chlamydia trachomatis D-LC]: L-rich region from 90 to 162 corrected with score 44
>CTRA-DLC-01-000664 	gi|297749224|gb|ADI51902.1| Hypothetical membrane spanning protein [Chlamydia trachomatis D-LC]: V-rich region from 37 to 98 corrected with score 43
>CTRA-DLC-01-000713 	gi|297749175|gb|ADI51853.1| Adherence factor [Chlamydia trachomatis D-LC]: K-rich region from 29 to 142 corrected with score 57
>CTRA-DLC-01-000714 	gi|297749174|gb|ADI51852.1| Adherence factor [Chlamydia trachomatis D-LC]: T-rich region from 6 to 133 corrected with score 44
>CTRA-DLC-01-000715 	gi|297749173|gb|ADI51851.1| Hypothetical membrane associated protein [Chlamydia trachomatis D-LC]: L-rich region from 34 to 64 corrected with score 41
>CTRA-DLC-01-000722 	gi|297749166|gb|ADI51844.1| Phosphatidylcholine-hydrolyzing phospholipase D (PLD) family [Chlamydia trachomatis D-LC]: S-rich region from 2 to 100 corrected with score 59
>CTRA-DLC-01-000724 	gi|297749164|gb|ADI51842.1| Phosphatidylcholine-hydrolyzing phospholipase D (PLD) family [Chlamydia trachomatis D-LC]: H-rich region from 4 to 30 corrected with score 46
>CTRA-DLC-01-000725 	gi|297749163|gb|ADI51841.1| MAC/perforin family protein [Chlamydia trachomatis D-LC]: S-rich region from 406 to 572 corrected with score 92
>CTRA-DLC-01-000731 	gi|297749157|gb|ADI51835.1| Hypothetical membrane spanning protein [Chlamydia trachomatis D-LC]: Q-rich region from 961 to 1155 corrected with score 43
>CTRA-DLC-01-000734 	gi|297749154|gb|ADI51832.1| Hypothetical protein CTDLC_0144 [Chlamydia trachomatis D-LC]: T-rich region from 2 to 62 corrected with score 46
>CTRA-DLC-01-000753 	gi|297749135|gb|ADI51813.1| SSU ribosomal protein S9P [Chlamydia trachomatis D-LC]: K-rich region from 92 to 133 corrected with score 49
>CTRA-DLC-01-000761 	gi|297749127|gb|ADI51805.1| Inclusion membrane protein G [Chlamydia trachomatis D-LC]: S-rich region from 89 to 166 corrected with score 53
>CTRA-DLC-01-000762 	gi|297749126|gb|ADI51804.1| Inclusion membrane protein F [Chlamydia trachomatis D-LC]: A-rich region from 29 to 92 corrected with score 41
>CTRA-DLC-01-000766 	gi|297749122|gb|ADI51800.1| Clpb [Chlamydia trachomatis D-LC]: E-rich region from 412 to 534 corrected with score 58
>CTRA-DLC-01-000774 	gi|297749114|gb|ADI51792.1| Hypothetical protein CTDLC_0105 [Chlamydia trachomatis D-LC]: S-rich region from 2 to 229 corrected with score 104
>CTRA-DLC-01-000774 	gi|297749114|gb|ADI51792.1| Hypothetical protein CTDLC_0105 [Chlamydia trachomatis D-LC]: C-rich region from 308 to 350 corrected with score 47
>CTRA-DLC-01-000783 	gi|297749105|gb|ADI51783.1| Bacterial Protein Translation Initiation Factor 2 (IF-2) [Chlamydia trachomatis D-LC]: S-rich region from 39 to 292 corrected with score 104
>CTRA-DLC-01-000783 	gi|297749105|gb|ADI51783.1| Bacterial Protein Translation Initiation Factor 2 (IF-2) [Chlamydia trachomatis D-LC]: K-rich region from 2 to 63 corrected with score 43
>CTRA-DLC-01-000783 	gi|297749105|gb|ADI51783.1| Bacterial Protein Translation Initiation Factor 2 (IF-2) [Chlamydia trachomatis D-LC]: E-rich region from 129 to 162 corrected with score 40
>CTRA-DLC-01-000789 	gi|297749099|gb|ADI51777.1| type III secretion inner membrane protein SctV [Chlamydia trachomatis D-LC]: L-rich region from 27 to 91 corrected with score 51
>CTRA-DLC-01-000790 	gi|297749098|gb|ADI51776.1| type III secreted protein SctW [Chlamydia trachomatis D-LC]: S-rich region from 2 to 233 corrected with score 48
>CTRA-DLC-01-000790 	gi|297749098|gb|ADI51776.1| type III secreted protein SctW [Chlamydia trachomatis D-LC]: P-rich region from 385 to 421 corrected with score 47
>CTRA-DLC-01-000797 	gi|297749091|gb|ADI51769.1| Hypothetical protein CTDLC_0082 [Chlamydia trachomatis D-LC]: S-rich region from 2 to 387 corrected with score 88
>CTRA-DLC-01-000797 	gi|297749091|gb|ADI51769.1| Hypothetical protein CTDLC_0082 [Chlamydia trachomatis D-LC]: D-rich region from 526 to 560 corrected with score 43
>CTRA-DLC-01-000813 	gi|297749075|gb|ADI51753.1| ADP,ATP carrier protein [Chlamydia trachomatis D-LC]: A-rich region from 435 to 523 corrected with score 50
>CTRA-DLC-01-000820 	gi|297749068|gb|ADI51746.1| Hypothetical membrane spanning protein [Chlamydia trachomatis D-LC]: P-rich region from 78 to 119 corrected with score 66
>CTRA-DLC-01-000825 	gi|297749063|gb|ADI51741.1| Hypothetical protein CTDLC_0053 [Chlamydia trachomatis D-LC]: E-rich region from 44 to 144 corrected with score 51
>CTRA-DLC-01-000827 	gi|297749061|gb|ADI51739.1| Hypothetical protein CTDLC_0051 [Chlamydia trachomatis D-LC]: S-rich region from 182 to 519 corrected with score 140
>CTRA-DLC-01-000827 	gi|297749061|gb|ADI51739.1| Hypothetical protein CTDLC_0051 [Chlamydia trachomatis D-LC]: T-rich region from 377 to 501 corrected with score 79
>CTRA-DLC-01-000827 	gi|297749061|gb|ADI51739.1| Hypothetical protein CTDLC_0051 [Chlamydia trachomatis D-LC]: E-rich region from 102 to 155 corrected with score 53
>CTRA-DLC-01-000828 	gi|297749060|gb|ADI51738.1| Hypothetical protein CTDLC_0050 [Chlamydia trachomatis D-LC]: S-rich region from 102 to 535 corrected with score 140
>CTRA-DLC-01-000828 	gi|297749060|gb|ADI51738.1| Hypothetical protein CTDLC_0050 [Chlamydia trachomatis D-LC]: P-rich region from 390 to 415 corrected with score 67
>CTRA-DLC-01-000828 	gi|297749060|gb|ADI51738.1| Hypothetical protein CTDLC_0050 [Chlamydia trachomatis D-LC]: P-rich region from 240 to 292 corrected with score 61
>CTRA-DLC-01-000828 	gi|297749060|gb|ADI51738.1| Hypothetical protein CTDLC_0050 [Chlamydia trachomatis D-LC]: T-rich region from 376 to 454 corrected with score 55
>CTRA-DLC-01-000829 	gi|297749059|gb|ADI51737.1| Hypothetical protein CTDLC_0049 [Chlamydia trachomatis D-LC]: S-rich region from 168 to 479 corrected with score 75
>CTRA-DLC-01-000872 	gi|297749016|gb|ADI51694.1| Hypothetical protein CTDLC_0005 [Chlamydia trachomatis D-LC]: S-rich region from 232 to 361 corrected with score 138
>CTRA-DLC-01-000877 	gi|297749011|gb|ADI51689.1| Hypothetical protein CTDLC_0875 [Chlamydia trachomatis D-LC]: S-rich region from 7 to 141 corrected with score 69
>CTRA-DUW-01-000000 	gi|15604718|ref|NP_219502.1| hypothetical protein CT875 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 7 to 141 corrected with score 69
>CTRA-DUW-01-000005 	gi|15604723|ref|NP_219507.1| hypothetical protein CT005 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 232 to 361 corrected with score 138
>CTRA-DUW-01-000047 	gi|15604765|ref|NP_219549.1| histone-like protein 2 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 7 to 158 corrected with score 133
>CTRA-DUW-01-000047 	gi|15604765|ref|NP_219549.1| histone-like protein 2 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 14 to 178 corrected with score 112
>CTRA-DUW-01-000050 	gi|15604768|ref|NP_219552.1| hypothetical protein CT049 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 168 to 479 corrected with score 74
>CTRA-DUW-01-000051 	gi|15604769|ref|NP_219553.1| hypothetical protein CT050 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 102 to 535 corrected with score 140
>CTRA-DUW-01-000051 	gi|15604769|ref|NP_219553.1| hypothetical protein CT050 [Chlamydia trachomatis D/UW-3/CX]: P-rich region from 390 to 415 corrected with score 67
>CTRA-DUW-01-000051 	gi|15604769|ref|NP_219553.1| hypothetical protein CT050 [Chlamydia trachomatis D/UW-3/CX]: P-rich region from 240 to 292 corrected with score 61
>CTRA-DUW-01-000051 	gi|15604769|ref|NP_219553.1| hypothetical protein CT050 [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 376 to 454 corrected with score 55
>CTRA-DUW-01-000052 	gi|15604770|ref|NP_219554.1| hypothetical protein CT051 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 182 to 519 corrected with score 140
>CTRA-DUW-01-000052 	gi|15604770|ref|NP_219554.1| hypothetical protein CT051 [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 377 to 501 corrected with score 79
>CTRA-DUW-01-000052 	gi|15604770|ref|NP_219554.1| hypothetical protein CT051 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 102 to 155 corrected with score 53
>CTRA-DUW-01-000054 	gi|15604772|ref|NP_219556.1| hypothetical protein CT053 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 27 to 127 corrected with score 51
>CTRA-DUW-01-000059 	gi|15604777|ref|NP_219561.1| hypothetical protein CT058 [Chlamydia trachomatis D/UW-3/CX]: P-rich region from 78 to 119 corrected with score 66
>CTRA-DUW-01-000066 	gi|15604784|ref|NP_219568.1| ADP/ATP translocase [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 435 to 523 corrected with score 50
>CTRA-DUW-01-000083 	gi|15604801|ref|NP_219585.1| hypothetical protein CT082 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 387 corrected with score 88
>CTRA-DUW-01-000083 	gi|15604801|ref|NP_219585.1| hypothetical protein CT082 [Chlamydia trachomatis D/UW-3/CX]: D-rich region from 526 to 560 corrected with score 43
>CTRA-DUW-01-000090 	gi|15604808|ref|NP_219592.1| low calcium response E [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 233 corrected with score 48
>CTRA-DUW-01-000090 	gi|15604808|ref|NP_219592.1| low calcium response E [Chlamydia trachomatis D/UW-3/CX]: P-rich region from 385 to 421 corrected with score 47
>CTRA-DUW-01-000091 	gi|15604809|ref|NP_219593.1| low calcium response D [Chlamydia trachomatis D/UW-3/CX]: L-rich region from 27 to 91 corrected with score 51
>CTRA-DUW-01-000097 	gi|15604815|ref|NP_219599.1| translation initiation factor IF-2 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 33 to 286 corrected with score 104
>CTRA-DUW-01-000097 	gi|15604815|ref|NP_219599.1| translation initiation factor IF-2 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 2 to 57 corrected with score 43
>CTRA-DUW-01-000097 	gi|15604815|ref|NP_219599.1| translation initiation factor IF-2 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 123 to 156 corrected with score 40
>CTRA-DUW-01-000106 	gi|15604824|ref|NP_219608.1| hypothetical protein CT105 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 229 corrected with score 104
>CTRA-DUW-01-000106 	gi|15604824|ref|NP_219608.1| hypothetical protein CT105 [Chlamydia trachomatis D/UW-3/CX]: C-rich region from 308 to 350 corrected with score 47
>CTRA-DUW-01-000114 	gi|15604832|ref|NP_219616.1| Clp protease ATPase [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 412 to 534 corrected with score 58
>CTRA-DUW-01-000118 	gi|15604836|ref|NP_219620.1| inclusion membrane protein F [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 29 to 92 corrected with score 41
>CTRA-DUW-01-000119 	gi|15604837|ref|NP_219621.1| inclusion membrane protein G [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 89 to 166 corrected with score 53
>CTRA-DUW-01-000127 	gi|15604845|ref|NP_219629.1| 30S ribosomal protein S9 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 88 to 129 corrected with score 49
>CTRA-DUW-01-000145 	gi|15604863|ref|NP_219647.1| hypothetical protein CT144 [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 2 to 62 corrected with score 46
>CTRA-DUW-01-000148 	gi|15604866|ref|NP_219650.1| hypothetical protein CT147 [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 961 to 1155 corrected with score 43
>CTRA-DUW-01-000154 	gi|15604872|ref|NP_219656.1| MAC/perforin family protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 383 to 549 corrected with score 92
>CTRA-DUW-01-000155 	gi|15604873|ref|NP_219657.1| phospholipase D endonuclease superfamily protein [Chlamydia trachomatis D/UW-3/CX]: H-rich region from 4 to 30 corrected with score 46
>CTRA-DUW-01-000158 	gi|15604876|ref|NP_219660.1| phospholipase D endonuclease superfamily protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 100 corrected with score 59
>CTRA-DUW-01-000165 	gi|15604883|ref|NP_219667.1| hypothetical protein CT164 [Chlamydia trachomatis D/UW-3/CX]: L-rich region from 34 to 64 corrected with score 41
>CTRA-DUW-01-000166 	gi|15604884|ref|NP_219668.1| hypothetical protein CT165 [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 6 to 133 corrected with score 44
>CTRA-DUW-01-000167 	gi|15604885|ref|NP_219669.1| hypothetical protein CT166 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 29 to 142 corrected with score 57
>CTRA-DUW-01-000216 	gi|15604934|ref|NP_219718.1| hypothetical protein CT214 [Chlamydia trachomatis D/UW-3/CX]: V-rich region from 37 to 98 corrected with score 43
>CTRA-DUW-01-000221 	gi|15604939|ref|NP_219723.1| prenyltransferase [Chlamydia trachomatis D/UW-3/CX]: L-rich region from 90 to 162 corrected with score 44
>CTRA-DUW-01-000226 	gi|15604944|ref|NP_219728.1| hypothetical protein CT223 [Chlamydia trachomatis D/UW-3/CX]: D-rich region from 248 to 262 corrected with score 41
>CTRA-DUW-01-000231 	gi|15604949|ref|NP_219733.1| hypothetical protein CT228 [Chlamydia trachomatis D/UW-3/CX]: V-rich region from 37 to 76 corrected with score 40
>CTRA-DUW-01-000232 	gi|15604950|ref|NP_219734.1| hypothetical protein CT229 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 8 to 74 corrected with score 44
>CTRA-DUW-01-000233 	gi|15604951|ref|NP_219735.1| neutral amino acid (glutamate) transporter [Chlamydia trachomatis D/UW-3/CX]: L-rich region from 16 to 105 corrected with score 41
>CTRA-DUW-01-000279 	gi|15604997|ref|NP_219781.1| hypothetical protein CT276 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 32 to 82 corrected with score 40
>CTRA-DUW-01-000289 	gi|15605007|ref|NP_219791.1| ClpC protease ATPase [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 443 to 500 corrected with score 57
>CTRA-DUW-01-000289 	gi|15605007|ref|NP_219791.1| ClpC protease ATPase [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 153 to 171 corrected with score 44
>CTRA-DUW-01-000291 	gi|15605009|ref|NP_219793.1| hypothetical protein CT288 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 32 to 93 corrected with score 55
>CTRA-DUW-01-000292 	gi|15605010|ref|NP_219794.1| hypothetical protein CT289 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 70 to 292 corrected with score 86
>CTRA-DUW-01-000292 	gi|15605010|ref|NP_219794.1| hypothetical protein CT289 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 176 to 300 corrected with score 43
>CTRA-DUW-01-000313 	gi|15605031|ref|NP_219815.1| V-type ATP synthase subunit E [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 18 to 70 corrected with score 40
>CTRA-DUW-01-000319 	gi|15605037|ref|NP_219821.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 34 to 56 corrected with score 45
>CTRA-DUW-01-000329 	gi|15605047|ref|NP_219831.1| hypothetical protein CT326 [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 479 to 532 corrected with score 55
>CTRA-DUW-01-000329 	gi|15605047|ref|NP_219831.1| hypothetical protein CT326 [Chlamydia trachomatis D/UW-3/CX]: D-rich region from 30 to 39 corrected with score 40
>CTRA-DUW-01-000330 	gi|15605048|ref|NP_219832.1| hypothetical protein CT326.1 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 6 to 55 corrected with score 41
>CTRA-DUW-01-000338 	gi|15605056|ref|NP_219840.1| excinuclease ABC subunit A [Chlamydia trachomatis D/UW-3/CX]: P-rich region from 918 to 934 corrected with score 40
>CTRA-DUW-01-000339 	gi|15605057|ref|NP_219841.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 375 to 443 corrected with score 43
>CTRA-DUW-01-000346 	gi|15605064|ref|NP_219848.1| heat shock protein J [Chlamydia trachomatis D/UW-3/CX]: G-rich region from 67 to 134 corrected with score 74
>CTRA-DUW-01-000357 	gi|15605612|ref|NP_219859.1| preprotein translocase subunit SecG [Chlamydia trachomatis D/UW-3/CX]: L-rich region from 1 to 25 corrected with score 41
>CTRA-DUW-01-000367 	gi|15605084|ref|NP_219869.1| hypothetical protein CT360 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 41 to 208 corrected with score 64
>CTRA-DUW-01-000379 	gi|15605096|ref|NP_219881.1| hypothetical protein CT372 [Chlamydia trachomatis D/UW-3/CX]: H-rich region from 5 to 20 corrected with score 46
>CTRA-DUW-01-000386 	gi|15605103|ref|NP_219888.1| GTP binding protein [Chlamydia trachomatis D/UW-3/CX]: R-rich region from 193 to 225 corrected with score 42
>CTRA-DUW-01-000400 	gi|15605117|ref|NP_219902.1| hypothetical protein CT392 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 133 corrected with score 45
>CTRA-DUW-01-000403 	gi|15605120|ref|NP_219905.1| HSP-70 cofactor [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-DUW-01-000404 	gi|15605121|ref|NP_219906.1| molecular chaperone DnaK [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 575 to 647 corrected with score 56
>CTRA-DUW-01-000404 	gi|15605121|ref|NP_219906.1| molecular chaperone DnaK [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 493 to 577 corrected with score 52
>CTRA-DUW-01-000405 	gi|15605122|ref|NP_219907.1| exoribonuclease II [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 653 to 694 corrected with score 80
>CTRA-DUW-01-000406 	gi|15605123|ref|NP_219908.1| hypothetical protein CT398 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 25 to 174 corrected with score 66
>CTRA-DUW-01-000421 	gi|15605138|ref|NP_219923.1| putative outer membrane protein B [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 31 to 1335 corrected with score 495
>CTRA-DUW-01-000421 	gi|15605138|ref|NP_219923.1| putative outer membrane protein B [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 800 to 840 corrected with score 47
>CTRA-DUW-01-000421 	gi|15605138|ref|NP_219923.1| putative outer membrane protein B [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 35 to 99 corrected with score 47
>CTRA-DUW-01-000422 	gi|15605139|ref|NP_219924.1| putative outer membrane protein C [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 5 to 1353 corrected with score 517
>CTRA-DUW-01-000422 	gi|15605139|ref|NP_219924.1| putative outer membrane protein C [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 611 to 719 corrected with score 61
>CTRA-DUW-01-000422 	gi|15605139|ref|NP_219924.1| putative outer membrane protein C [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 1326 to 1350 corrected with score 53
>CTRA-DUW-01-000422 	gi|15605139|ref|NP_219924.1| putative outer membrane protein C [Chlamydia trachomatis D/UW-3/CX]: N-rich region from 635 to 706 corrected with score 43
>CTRA-DUW-01-000425 	gi|15605142|ref|NP_219927.1| metal transport protein [Chlamydia trachomatis D/UW-3/CX]: L-rich region from 186 to 273 corrected with score 56
>CTRA-DUW-01-000426 	gi|15605143|ref|NP_219928.1| GTPase ObgE [Chlamydia trachomatis D/UW-3/CX]: G-rich region from 31 to 43 corrected with score 43
>CTRA-DUW-01-000449 	gi|15605611|ref|NP_219951.1| 30S ribosomal protein S12 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 9 to 51 corrected with score 42
>CTRA-DUW-01-000452 	gi|15605168|ref|NP_219954.1| hypothetical protein CT442 [Chlamydia trachomatis D/UW-3/CX]: V-rich region from 41 to 87 corrected with score 40
>CTRA-DUW-01-000467 	gi|15605183|ref|NP_219969.1| hypothetical protein CT456 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 845 corrected with score 372
>CTRA-DUW-01-000467 	gi|15605183|ref|NP_219969.1| hypothetical protein CT456 [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 11 to 116 corrected with score 80
>CTRA-DUW-01-000467 	gi|15605183|ref|NP_219969.1| hypothetical protein CT456 [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 536 to 581 corrected with score 55
>CTRA-DUW-01-000470 	gi|15605186|ref|NP_219972.1| peptide chain release factor 2 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 25 to 101 corrected with score 41
>CTRA-DUW-01-000496 	gi|15605212|ref|NP_219998.1| hypothetical protein CT484 [Chlamydia trachomatis D/UW-3/CX]: L-rich region from 20 to 81 corrected with score 50
>CTRA-DUW-01-000503 	gi|15605219|ref|NP_220005.1| transcription termination factor Rho [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 2 to 44 corrected with score 41
>CTRA-DUW-01-000516 	gi|15605232|ref|NP_220018.1| hypothetical protein CT503 [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-DUW-01-000517 	gi|15605233|ref|NP_220019.1| hypothetical protein CT504 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 138 to 288 corrected with score 64
>CTRA-DUW-01-000517 	gi|15605233|ref|NP_220019.1| hypothetical protein CT504 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 138 to 164 corrected with score 49
>CTRA-DUW-01-000521 	gi|15605237|ref|NP_220023.1| 30S ribosomal protein S11 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 48 to 107 corrected with score 43
>CTRA-DUW-01-000524 	gi|15605240|ref|NP_220026.1| 50S ribosomal protein L15 [Chlamydia trachomatis D/UW-3/CX]: G-rich region from 21 to 55 corrected with score 42
>CTRA-DUW-01-000542 	gi|15605258|ref|NP_220044.1| hypothetical protein CT529 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 43 to 214 corrected with score 57
>CTRA-DUW-01-000557 	gi|15605273|ref|NP_220059.1| hexosphosphate transport [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 221 to 252 corrected with score 43
>CTRA-DUW-01-000572 	gi|15605288|ref|NP_220074.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 287 to 325 corrected with score 42
>CTRA-DUW-01-000575 	gi|15605291|ref|NP_220077.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]: L-rich region from 93 to 121 corrected with score 44
>CTRA-DUW-01-000575 	gi|15605291|ref|NP_220077.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]: M-rich region from 229 to 303 corrected with score 41
>CTRA-DUW-01-000577 	gi|15605293|ref|NP_220079.1| Yop proteins translocation protein T [Chlamydia trachomatis D/UW-3/CX]: M-rich region from 164 to 256 corrected with score 47
>CTRA-DUW-01-000585 	gi|15605301|ref|NP_220087.1| general secretion pathway protein D [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 388 to 444 corrected with score 48
>CTRA-DUW-01-000589 	gi|15605305|ref|NP_220091.1| low calcium response protein H [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 177 to 232 corrected with score 58
>CTRA-DUW-01-000591 	gi|15605307|ref|NP_220093.1| hypothetical protein CT578 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 308 corrected with score 124
>CTRA-DUW-01-000591 	gi|15605307|ref|NP_220093.1| hypothetical protein CT578 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 278 to 487 corrected with score 94
>CTRA-DUW-01-000592 	gi|15605308|ref|NP_220094.1| hypothetical protein CT579 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 20 to 436 corrected with score 197
>CTRA-DUW-01-000592 	gi|15605308|ref|NP_220094.1| hypothetical protein CT579 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 231 to 313 corrected with score 54
>CTRA-DUW-01-000592 	gi|15605308|ref|NP_220094.1| hypothetical protein CT579 [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-DUW-01-000612 	gi|15605328|ref|NP_220114.1| histone H1-I [Chlamydia trachomatis D/UW-3/CX]: P-rich region from 47 to 101 corrected with score 60
>CTRA-DUW-01-000612 	gi|15605328|ref|NP_220114.1| histone H1-I [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 30 to 115 corrected with score 42
>CTRA-DUW-01-000615 	gi|15605331|ref|NP_220117.1| invasin repeat-containing phosphatase [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-DUW-01-000631 	gi|15605347|ref|NP_220133.1| hypothetical protein CT616 [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 85 to 225 corrected with score 65
>CTRA-DUW-01-000632 	gi|15605348|ref|NP_220134.1| 30S ribosomal protein S20 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 4 to 45 corrected with score 47
>CTRA-DUW-01-000633 	gi|15605349|ref|NP_220135.1| hypothetical protein CT618 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 8 to 83 corrected with score 42
>CTRA-DUW-01-000636 	gi|15605352|ref|NP_220138.1| hypothetical protein CT621 [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-DUW-01-000637 	gi|15605353|ref|NP_220139.1| hypothetical protein CT622 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 597 corrected with score 181
>CTRA-DUW-01-000650 	gi|15605366|ref|NP_220152.1| hypothetical protein CT635 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 101 to 140 corrected with score 44
>CTRA-DUW-01-000658 	gi|15605374|ref|NP_220160.1| hypothetical protein CT642 [Chlamydia trachomatis D/UW-3/CX]: F-rich region from 169 to 204 corrected with score 47
>CTRA-DUW-01-000659 	gi|15605375|ref|NP_220161.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 744 to 781 corrected with score 50
>CTRA-DUW-01-000659 	gi|15605375|ref|NP_220161.1| fused DNA topoisomerase I/SWI domain-containing protein [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 437 to 474 corrected with score 49
>CTRA-DUW-01-000678 	gi|15605394|ref|NP_220180.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 307 to 384 corrected with score 55
>CTRA-DUW-01-000681 	gi|15605397|ref|NP_220183.1| FHA domain-containing protein [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 100 to 344 corrected with score 168
>CTRA-DUW-01-000681 	gi|15605397|ref|NP_220183.1| FHA domain-containing protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 109 to 333 corrected with score 108
>CTRA-DUW-01-000687 	gi|15605403|ref|NP_220189.1| hypothetical protein CT670 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 13 to 168 corrected with score 111
>CTRA-DUW-01-000688 	gi|15605404|ref|NP_220190.1| hypothetical protein CT671 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 16 to 89 corrected with score 44
>CTRA-DUW-01-000688 	gi|15605404|ref|NP_220190.1| hypothetical protein CT671 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 252 to 280 corrected with score 42
>CTRA-DUW-01-000691 	gi|15605407|ref|NP_220193.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 127 to 245 corrected with score 68
>CTRA-DUW-01-000712 	gi|15605428|ref|NP_220214.1| hypothetical protein CT695 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 77 corrected with score 41
>CTRA-DUW-01-000720 	gi|15605436|ref|NP_220222.1| GTP-binding protein EngA [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 169 to 212 corrected with score 40
>CTRA-DUW-01-000724 	gi|15605440|ref|NP_220226.1| trigger factor [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 255 to 361 corrected with score 46
>CTRA-DUW-01-000725 	gi|15605441|ref|NP_220227.1| SWF/SNF family helicase [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 103 to 140 corrected with score 41
>CTRA-DUW-01-000728 	gi|15605444|ref|NP_220230.1| hypothetical protein CT711 [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-DUW-01-000760 	gi|15605476|ref|NP_220262.1| histone-like developmental protein [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 4 to 125 corrected with score 110
>CTRA-DUW-01-000760 	gi|15605476|ref|NP_220262.1| histone-like developmental protein [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 64 to 117 corrected with score 42
>CTRA-DUW-01-000767 	gi|15605483|ref|NP_220269.1| transketolase [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-DUW-01-000785 	gi|15605501|ref|NP_220287.1| hypothetical protein CT768 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 313 to 451 corrected with score 41
>CTRA-DUW-01-000796 	gi|15605512|ref|NP_220298.1| hypothetical protein CT779 [Chlamydia trachomatis D/UW-3/CX]: P-rich region from 43 to 78 corrected with score 45
>CTRA-DUW-01-000802 	gi|15605518|ref|NP_220304.1| 50S ribosomal protein L34 [Chlamydia trachomatis D/UW-3/CX]: R-rich region from 2 to 40 corrected with score 41
>CTRA-DUW-01-000804 	gi|15605520|ref|NP_220306.1| 30S ribosomal protein S14 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 3 to 53 corrected with score 40
>CTRA-DUW-01-000812 	gi|15605528|ref|NP_220314.1| hypothetical protein CT794.1 [Chlamydia trachomatis D/UW-3/CX]: A-rich region from 20 to 71 corrected with score 46
>CTRA-DUW-01-000830 	gi|15605546|ref|NP_220332.1| polymorphic outer membrane protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 121 to 671 corrected with score 60
>CTRA-DUW-01-000831 	gi|15605547|ref|NP_220333.1| hypothetical protein CT813 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 95 to 254 corrected with score 81
>CTRA-DUW-01-000838 	gi|15605554|ref|NP_220340.1| transport permease [Chlamydia trachomatis D/UW-3/CX]: L-rich region from 141 to 186 corrected with score 50
>CTRA-DUW-01-000843 	gi|15605559|ref|NP_220345.1| zinc metalloprotease [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 468 to 508 corrected with score 42
>CTRA-DUW-01-000853 	gi|15605569|ref|NP_220355.1| 50S ribosomal protein L35 [Chlamydia trachomatis D/UW-3/CX]: K-rich region from 3 to 47 corrected with score 40
>CTRA-DUW-01-000868 	gi|15605584|ref|NP_220370.1| hypothetical protein CT849 [Chlamydia trachomatis D/UW-3/CX]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-DUW-01-000870 	gi|15605586|ref|NP_220372.1| hypothetical protein CT850 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 141 to 310 corrected with score 46
>CTRA-DUW-01-000880 	gi|15605596|ref|NP_220382.1| hypothetical protein CT860 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 12 to 280 corrected with score 97
>CTRA-DUW-01-000880 	gi|15605596|ref|NP_220382.1| hypothetical protein CT860 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 227 to 267 corrected with score 46
>CTRA-DUW-01-000881 	gi|15605597|ref|NP_220383.1| hypothetical protein CT861 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 2 to 233 corrected with score 99
>CTRA-DUW-01-000883 	gi|15605599|ref|NP_220385.1| hypothetical protein CT863 [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 8 to 335 corrected with score 119
>CTRA-DUW-01-000883 	gi|15605599|ref|NP_220385.1| hypothetical protein CT863 [Chlamydia trachomatis D/UW-3/CX]: E-rich region from 235 to 283 corrected with score 51
>CTRA-DUW-01-000888 	gi|15605604|ref|NP_220390.1| hypothetical protein CT868 [Chlamydia trachomatis D/UW-3/CX]: P-rich region from 74 to 143 corrected with score 151
>CTRA-DUW-01-000889 	gi|15605605|ref|NP_220391.1| polymorphic outer membrane protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 342 to 599 corrected with score 61
>CTRA-DUW-01-000890 	gi|15605606|ref|NP_220392.1| polymorphic outer membrane protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 560 to 829 corrected with score 80
>CTRA-DUW-01-000890 	gi|15605606|ref|NP_220392.1| polymorphic outer membrane protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 61 to 328 corrected with score 46
>CTRA-DUW-01-000890 	gi|15605606|ref|NP_220392.1| polymorphic outer membrane protein [Chlamydia trachomatis D/UW-3/CX]: T-rich region from 647 to 690 corrected with score 46
>CTRA-DUW-01-000891 	gi|15605607|ref|NP_220393.1| polymorphic outer membrane protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 105 to 615 corrected with score 69
>CTRA-DUW-01-000892 	gi|15605608|ref|NP_220394.1| polymorphic outer membrane protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 56 to 654 corrected with score 142
>CTRA-DUW-01-000892 	gi|15605608|ref|NP_220394.1| polymorphic outer membrane protein [Chlamydia trachomatis D/UW-3/CX]: P-rich region from 153 to 166 corrected with score 41
>CTRA-DUW-01-000894 	gi|15605610|ref|NP_220396.1| polymorphic outer membrane protein [Chlamydia trachomatis D/UW-3/CX]: S-rich region from 107 to 780 corrected with score 120
>CTRA-E11-01-000001 	gi|296439226|gb|ADH21379.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 107 to 780 corrected with score 122
>CTRA-E11-01-000003 	gi|296439224|gb|ADH21377.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 56 to 654 corrected with score 139
>CTRA-E11-01-000003 	gi|296439224|gb|ADH21377.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: P-rich region from 153 to 166 corrected with score 41
>CTRA-E11-01-000004 	gi|296439223|gb|ADH21376.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 105 to 615 corrected with score 69
>CTRA-E11-01-000005 	gi|296439222|gb|ADH21375.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 560 to 829 corrected with score 80
>CTRA-E11-01-000005 	gi|296439222|gb|ADH21375.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 61 to 328 corrected with score 46
>CTRA-E11-01-000005 	gi|296439222|gb|ADH21375.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: T-rich region from 647 to 690 corrected with score 46
>CTRA-E11-01-000006 	gi|296439221|gb|ADH21374.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 342 to 599 corrected with score 61
>CTRA-E11-01-000007 	gi|296439220|gb|ADH21373.1| hypothetical protein E11023_04625 [Chlamydia trachomatis E/11023]: P-rich region from 74 to 140 corrected with score 131
>CTRA-E11-01-000012 	gi|296439215|gb|ADH21368.1| hypothetical protein E11023_04600 [Chlamydia trachomatis E/11023]: Y-rich region from 52 to 64 corrected with score 50
>CTRA-E11-01-000012 	gi|296439215|gb|ADH21368.1| hypothetical protein E11023_04600 [Chlamydia trachomatis E/11023]: K-rich region from 78 to 101 corrected with score 40
>CTRA-E11-01-000013 	gi|296439214|gb|ADH21367.1| hypothetical protein E11023_04595 [Chlamydia trachomatis E/11023]: S-rich region from 102 to 335 corrected with score 116
>CTRA-E11-01-000013 	gi|296439214|gb|ADH21367.1| hypothetical protein E11023_04595 [Chlamydia trachomatis E/11023]: E-rich region from 235 to 283 corrected with score 49
>CTRA-E11-01-000016 	gi|296439211|gb|ADH21364.1| hypothetical protein E11023_04580 [Chlamydia trachomatis E/11023]: S-rich region from 12 to 280 corrected with score 101
>CTRA-E11-01-000016 	gi|296439211|gb|ADH21364.1| hypothetical protein E11023_04580 [Chlamydia trachomatis E/11023]: E-rich region from 227 to 267 corrected with score 46
>CTRA-E11-01-000026 	gi|296439201|gb|ADH21354.1| hypothetical protein E11023_04530 [Chlamydia trachomatis E/11023]: E-rich region from 141 to 310 corrected with score 46
>CTRA-E11-01-000028 	gi|296439199|gb|ADH21352.1| hypothetical protein E11023_04520 [Chlamydia trachomatis E/11023]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-E11-01-000044 	gi|296439183|gb|ADH21336.1| 50S ribosomal protein L35 [Chlamydia trachomatis E/11023]: K-rich region from 3 to 47 corrected with score 40
>CTRA-E11-01-000055 	gi|296439172|gb|ADH21325.1| metalloprotease-insulinase [Chlamydia trachomatis E/11023]: E-rich region from 468 to 508 corrected with score 42
>CTRA-E11-01-000060 	gi|296439167|gb|ADH21320.1| putative membrane transport protein [Chlamydia trachomatis E/11023]: L-rich region from 141 to 186 corrected with score 50
>CTRA-E11-01-000068 	gi|296439159|gb|ADH21312.1| candidate inclusion membrane protein [Chlamydia trachomatis E/11023]: E-rich region from 95 to 254 corrected with score 81
>CTRA-E11-01-000070 	gi|296439157|gb|ADH21310.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 121 to 671 corrected with score 60
>CTRA-E11-01-000091 	gi|296439136|gb|ADH21289.1| hypothetical protein E11023_04205 [Chlamydia trachomatis E/11023]: A-rich region from 17 to 68 corrected with score 44
>CTRA-E11-01-000100 	gi|296439127|gb|ADH21280.1| 30S ribosomal protein S14 [Chlamydia trachomatis E/11023]: K-rich region from 3 to 53 corrected with score 44
>CTRA-E11-01-000120 	gi|296439107|gb|ADH21260.1| hypothetical protein E11023_04060 [Chlamydia trachomatis E/11023]: E-rich region from 313 to 447 corrected with score 41
>CTRA-E11-01-000139 	gi|296439088|gb|ADH21241.1| transketolase [Chlamydia trachomatis E/11023]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-E11-01-000140 	gi|296439087|gb|ADH21240.1| hypothetical protein E11023_03960 [Chlamydia trachomatis E/11023]: F-rich region from 35 to 65 corrected with score 40
>CTRA-E11-01-000147 	gi|296439080|gb|ADH21233.1| histone H1--like developmental protein [Chlamydia trachomatis E/11023]: K-rich region from 4 to 125 corrected with score 110
>CTRA-E11-01-000182 	gi|296439045|gb|ADH21198.1| hypothetical protein E11023_03750 [Chlamydia trachomatis E/11023]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-E11-01-000185 	gi|296439042|gb|ADH21195.1| SWF/SNF family helicase [Chlamydia trachomatis E/11023]: E-rich region from 103 to 140 corrected with score 41
>CTRA-E11-01-000187 	gi|296439040|gb|ADH21193.1| trigger factor [Chlamydia trachomatis E/11023]: E-rich region from 255 to 361 corrected with score 46
>CTRA-E11-01-000191 	gi|296439036|gb|ADH21189.1| GTP-binding protein EngA [Chlamydia trachomatis E/11023]: E-rich region from 169 to 212 corrected with score 40
>CTRA-E11-01-000199 	gi|296439028|gb|ADH21181.1| hypothetical protein E11023_03665 [Chlamydia trachomatis E/11023]: S-rich region from 2 to 77 corrected with score 41
>CTRA-E11-01-000221 	gi|296439006|gb|ADH21159.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis E/11023]: Q-rich region from 127 to 245 corrected with score 62
>CTRA-E11-01-000224 	gi|296439003|gb|ADH21156.1| hypothetical protein E11023_03540 [Chlamydia trachomatis E/11023]: S-rich region from 37 to 124 corrected with score 45
>CTRA-E11-01-000224 	gi|296439003|gb|ADH21156.1| hypothetical protein E11023_03540 [Chlamydia trachomatis E/11023]: E-rich region from 251 to 279 corrected with score 42
>CTRA-E11-01-000225 	gi|296439002|gb|ADH21155.1| hypothetical protein E11023_03535 [Chlamydia trachomatis E/11023]: E-rich region from 13 to 168 corrected with score 114
>CTRA-E11-01-000231 	gi|296438996|gb|ADH21149.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis E/11023]: E-rich region from 100 to 344 corrected with score 168
>CTRA-E11-01-000231 	gi|296438996|gb|ADH21149.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis E/11023]: S-rich region from 109 to 333 corrected with score 108
>CTRA-E11-01-000234 	gi|296438993|gb|ADH21146.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis E/11023]: K-rich region from 307 to 384 corrected with score 55
>CTRA-E11-01-000254 	gi|296438973|gb|ADH21126.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis E/11023]: E-rich region from 437 to 474 corrected with score 49
>CTRA-E11-01-000254 	gi|296438973|gb|ADH21126.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis E/11023]: K-rich region from 744 to 781 corrected with score 49
>CTRA-E11-01-000255 	gi|296438972|gb|ADH21125.1| hypothetical protein E11023_03385 [Chlamydia trachomatis E/11023]: F-rich region from 169 to 204 corrected with score 47
>CTRA-E11-01-000262 	gi|296438965|gb|ADH21118.1| hypothetical protein E11023_03350 [Chlamydia trachomatis E/11023]: K-rich region from 101 to 140 corrected with score 44
>CTRA-E11-01-000278 	gi|296438949|gb|ADH21102.1| hypothetical protein E11023_03270 [Chlamydia trachomatis E/11023]: S-rich region from 2 to 629 corrected with score 206
>CTRA-E11-01-000280 	gi|296438947|gb|ADH21100.1| hypothetical protein E11023_03260 [Chlamydia trachomatis E/11023]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-E11-01-000283 	gi|296438944|gb|ADH21097.1| hypothetical protein E11023_03245 [Chlamydia trachomatis E/11023]: S-rich region from 16 to 83 corrected with score 46
>CTRA-E11-01-000284 	gi|296438943|gb|ADH21096.1| 30S ribosomal protein S20 [Chlamydia trachomatis E/11023]: K-rich region from 4 to 45 corrected with score 47
>CTRA-E11-01-000285 	gi|296438942|gb|ADH21095.1| putative integral membrane protein [Chlamydia trachomatis E/11023]: Q-rich region from 85 to 225 corrected with score 68
>CTRA-E11-01-000301 	gi|296438926|gb|ADH21079.1| putative soluble transglycosylase [Chlamydia trachomatis E/11023]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-E11-01-000304 	gi|296438923|gb|ADH21076.1| histone H1-I [Chlamydia trachomatis E/11023]: P-rich region from 47 to 106 corrected with score 61
>CTRA-E11-01-000304 	gi|296438923|gb|ADH21076.1| histone H1-I [Chlamydia trachomatis E/11023]: K-rich region from 30 to 115 corrected with score 43
>CTRA-E11-01-000322 	gi|296438905|gb|ADH21058.1| hypothetical protein E11023_03040 [Chlamydia trachomatis E/11023]: S-rich region from 20 to 436 corrected with score 196
>CTRA-E11-01-000322 	gi|296438905|gb|ADH21058.1| hypothetical protein E11023_03040 [Chlamydia trachomatis E/11023]: A-rich region from 231 to 313 corrected with score 58
>CTRA-E11-01-000322 	gi|296438905|gb|ADH21058.1| hypothetical protein E11023_03040 [Chlamydia trachomatis E/11023]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-E11-01-000322 	gi|296438905|gb|ADH21058.1| hypothetical protein E11023_03040 [Chlamydia trachomatis E/11023]: Q-rich region from 162 to 199 corrected with score 40
>CTRA-E11-01-000323 	gi|296438904|gb|ADH21057.1| putative type III secretion system membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 2 to 308 corrected with score 126
>CTRA-E11-01-000323 	gi|296438904|gb|ADH21057.1| putative type III secretion system membrane protein [Chlamydia trachomatis E/11023]: A-rich region from 278 to 487 corrected with score 94
>CTRA-E11-01-000325 	gi|296438902|gb|ADH21055.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis E/11023]: K-rich region from 177 to 232 corrected with score 48
>CTRA-E11-01-000329 	gi|296438898|gb|ADH21051.1| general secretion pathway protein D [Chlamydia trachomatis E/11023]: S-rich region from 388 to 444 corrected with score 54
>CTRA-E11-01-000337 	gi|296438890|gb|ADH21043.1| type III secretion system, membrane protein [Chlamydia trachomatis E/11023]: M-rich region from 164 to 256 corrected with score 47
>CTRA-E11-01-000339 	gi|296438888|gb|ADH21041.1| type III secretion system protein [Chlamydia trachomatis E/11023]: L-rich region from 93 to 121 corrected with score 44
>CTRA-E11-01-000339 	gi|296438888|gb|ADH21041.1| type III secretion system protein [Chlamydia trachomatis E/11023]: M-rich region from 229 to 303 corrected with score 41
>CTRA-E11-01-000343 	gi|296438884|gb|ADH21037.1| type III secretion system protein, membrane component [Chlamydia trachomatis E/11023]: E-rich region from 287 to 325 corrected with score 41
>CTRA-E11-01-000358 	gi|296438869|gb|ADH21022.1| putative sugar phosphate permease [Chlamydia trachomatis E/11023]: E-rich region from 221 to 252 corrected with score 43
>CTRA-E11-01-000373 	gi|296438854|gb|ADH21007.1| hypothetical protein E11023_02785 [Chlamydia trachomatis E/11023]: A-rich region from 43 to 214 corrected with score 42
>CTRA-E11-01-000391 	gi|296438836|gb|ADH20989.1| 50S ribosomal protein L15 [Chlamydia trachomatis E/11023]: G-rich region from 21 to 55 corrected with score 42
>CTRA-E11-01-000394 	gi|296438833|gb|ADH20986.1| 30S ribosomal protein S11 [Chlamydia trachomatis E/11023]: A-rich region from 48 to 107 corrected with score 43
>CTRA-E11-01-000398 	gi|296438829|gb|ADH20982.1| hypothetical protein E11023_02660 [Chlamydia trachomatis E/11023]: E-rich region from 138 to 288 corrected with score 66
>CTRA-E11-01-000398 	gi|296438829|gb|ADH20982.1| hypothetical protein E11023_02660 [Chlamydia trachomatis E/11023]: K-rich region from 138 to 164 corrected with score 49
>CTRA-E11-01-000399 	gi|296438828|gb|ADH20981.1| hypothetical protein E11023_02655 [Chlamydia trachomatis E/11023]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-E11-01-000412 	gi|296438815|gb|ADH20968.1| transcription termination factor Rho [Chlamydia trachomatis E/11023]: E-rich region from 2 to 44 corrected with score 40
>CTRA-E11-01-000419 	gi|296438808|gb|ADH20961.1| hypothetical protein E11023_02555 [Chlamydia trachomatis E/11023]: L-rich region from 20 to 81 corrected with score 50
>CTRA-E11-01-000450 	gi|296438777|gb|ADH20930.1| hypothetical protein E11023_02395 [Chlamydia trachomatis E/11023]: S-rich region from 2 to 796 corrected with score 345
>CTRA-E11-01-000450 	gi|296438777|gb|ADH20930.1| hypothetical protein E11023_02395 [Chlamydia trachomatis E/11023]: T-rich region from 11 to 116 corrected with score 90
>CTRA-E11-01-000450 	gi|296438777|gb|ADH20930.1| hypothetical protein E11023_02395 [Chlamydia trachomatis E/11023]: T-rich region from 487 to 532 corrected with score 55
>CTRA-E11-01-000471 	gi|296438756|gb|ADH20909.1| 30S ribosomal protein S12 [Chlamydia trachomatis E/11023]: K-rich region from 9 to 51 corrected with score 42
>CTRA-E11-01-000495 	gi|296438732|gb|ADH20885.1| GTPase ObgE [Chlamydia trachomatis E/11023]: G-rich region from 31 to 43 corrected with score 43
>CTRA-E11-01-000496 	gi|296438731|gb|ADH20884.1| metal transporter, membrane permease component [Chlamydia trachomatis E/11023]: L-rich region from 186 to 273 corrected with score 56
>CTRA-E11-01-000499 	gi|296438728|gb|ADH20881.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 5 to 1367 corrected with score 528
>CTRA-E11-01-000499 	gi|296438728|gb|ADH20881.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: T-rich region from 1340 to 1364 corrected with score 53
>CTRA-E11-01-000499 	gi|296438728|gb|ADH20881.1| polymorphic outer membrane protein [Chlamydia trachomatis E/11023]: E-rich region from 625 to 733 corrected with score 49
>CTRA-E11-01-000500 	gi|296438727|gb|ADH20880.1| putative outer membrane protein B [Chlamydia trachomatis E/11023]: S-rich region from 31 to 1336 corrected with score 503
>CTRA-E11-01-000500 	gi|296438727|gb|ADH20880.1| putative outer membrane protein B [Chlamydia trachomatis E/11023]: A-rich region from 801 to 841 corrected with score 51
>CTRA-E11-01-000500 	gi|296438727|gb|ADH20880.1| putative outer membrane protein B [Chlamydia trachomatis E/11023]: T-rich region from 35 to 99 corrected with score 45
>CTRA-E11-01-000515 	gi|296438712|gb|ADH20865.1| hypothetical protein E11023_02070 [Chlamydia trachomatis E/11023]: E-rich region from 25 to 174 corrected with score 66
>CTRA-E11-01-000516 	gi|296438711|gb|ADH20864.1| exoribonuclease II [Chlamydia trachomatis E/11023]: K-rich region from 653 to 694 corrected with score 81
>CTRA-E11-01-000517 	gi|296438710|gb|ADH20863.1| molecular chaperone DnaK [Chlamydia trachomatis E/11023]: S-rich region from 575 to 647 corrected with score 56
>CTRA-E11-01-000517 	gi|296438710|gb|ADH20863.1| molecular chaperone DnaK [Chlamydia trachomatis E/11023]: E-rich region from 493 to 577 corrected with score 52
>CTRA-E11-01-000518 	gi|296438709|gb|ADH20862.1| HSP-70 cofactor [Chlamydia trachomatis E/11023]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-E11-01-000521 	gi|296438706|gb|ADH20859.1| hypothetical protein E11023_02040 [Chlamydia trachomatis E/11023]: S-rich region from 2 to 133 corrected with score 45
>CTRA-E11-01-000534 	gi|296438693|gb|ADH20846.1| putative nucleotide-binding protein [Chlamydia trachomatis E/11023]: R-rich region from 193 to 225 corrected with score 42
>CTRA-E11-01-000540 	gi|296438687|gb|ADH20840.1| hypothetical protein E11023_01945 [Chlamydia trachomatis E/11023]: H-rich region from 5 to 20 corrected with score 48
>CTRA-E11-01-000552 	gi|296438675|gb|ADH20828.1| hypothetical protein E11023_01885 [Chlamydia trachomatis E/11023]: E-rich region from 41 to 208 corrected with score 63
>CTRA-E11-01-000555 	gi|296438672|gb|ADH20825.1| putative inner membrane protein [Chlamydia trachomatis E/11023]: S-rich region from 10 to 32 corrected with score 44
>CTRA-E11-01-000562 	gi|296438665|gb|ADH20818.1| preprotein translocase subunit SecG [Chlamydia trachomatis E/11023]: L-rich region from 1 to 25 corrected with score 41
>CTRA-E11-01-000573 	gi|296438654|gb|ADH20807.1| chaperone protein DnaJ [Chlamydia trachomatis E/11023]: G-rich region from 67 to 134 corrected with score 74
>CTRA-E11-01-000581 	gi|296438646|gb|ADH20799.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis E/11023]: S-rich region from 375 to 443 corrected with score 49
>CTRA-E11-01-000582 	gi|296438645|gb|ADH20798.1| excinuclease ABC subunit A [Chlamydia trachomatis E/11023]: P-rich region from 918 to 934 corrected with score 40
>CTRA-E11-01-000591 	gi|296438636|gb|ADH20789.1| hypothetical protein E11023_01690 [Chlamydia trachomatis E/11023]: S-rich region from 6 to 55 corrected with score 41
>CTRA-E11-01-000602 	gi|296438625|gb|ADH20778.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis E/11023]: A-rich region from 34 to 56 corrected with score 45
>CTRA-E11-01-000608 	gi|296438619|gb|ADH20772.1| V-type ATP synthase subunit E [Chlamydia trachomatis E/11023]: E-rich region from 18 to 70 corrected with score 40
>CTRA-E11-01-000628 	gi|296438599|gb|ADH20752.1| hypothetical protein E11023_01495 [Chlamydia trachomatis E/11023]: K-rich region from 70 to 300 corrected with score 90
>CTRA-E11-01-000628 	gi|296438599|gb|ADH20752.1| hypothetical protein E11023_01495 [Chlamydia trachomatis E/11023]: A-rich region from 178 to 308 corrected with score 50
>CTRA-E11-01-000629 	gi|296438598|gb|ADH20751.1| candidate inclusion membrane protein [Chlamydia trachomatis E/11023]: A-rich region from 32 to 93 corrected with score 54
>CTRA-E11-01-000632 	gi|296438595|gb|ADH20748.1| ATP-dependent Clp protease [Chlamydia trachomatis E/11023]: E-rich region from 443 to 500 corrected with score 57
>CTRA-E11-01-000632 	gi|296438595|gb|ADH20748.1| ATP-dependent Clp protease [Chlamydia trachomatis E/11023]: S-rich region from 153 to 171 corrected with score 44
>CTRA-E11-01-000642 	gi|296438585|gb|ADH20738.1| hypothetical protein E11023_01425 [Chlamydia trachomatis E/11023]: E-rich region from 32 to 82 corrected with score 40
>CTRA-E11-01-000690 	gi|296438537|gb|ADH20690.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis E/11023]: L-rich region from 16 to 105 corrected with score 41
>CTRA-E11-01-000691 	gi|296438536|gb|ADH20689.1| hypothetical protein E11023_01180 [Chlamydia trachomatis E/11023]: A-rich region from 8 to 74 corrected with score 40
>CTRA-E11-01-000692 	gi|296438535|gb|ADH20688.1| hypothetical protein E11023_01175 [Chlamydia trachomatis E/11023]: V-rich region from 37 to 76 corrected with score 40
>CTRA-E11-01-000697 	gi|296438530|gb|ADH20683.1| hypothetical protein E11023_01150 [Chlamydia trachomatis E/11023]: D-rich region from 248 to 262 corrected with score 41
>CTRA-E11-01-000702 	gi|296438525|gb|ADH20678.1| prenyltransferase [Chlamydia trachomatis E/11023]: L-rich region from 90 to 162 corrected with score 44
>CTRA-E11-01-000707 	gi|296438520|gb|ADH20673.1| hypothetical protein E11023_01100 [Chlamydia trachomatis E/11023]: V-rich region from 37 to 98 corrected with score 43
>CTRA-E11-01-000747 	gi|296438480|gb|ADH20633.1| hypothetical protein E11023_00900 [Chlamydia trachomatis E/11023]: K-rich region from 107 to 158 corrected with score 41
>CTRA-E11-01-000756 	gi|296438471|gb|ADH20624.1| hypothetical protein E11023_00855 [Chlamydia trachomatis E/11023]: K-rich region from 29 to 142 corrected with score 57
>CTRA-E11-01-000764 	gi|296438463|gb|ADH20616.1| phospholipase D endonuclease superfamily protein [Chlamydia trachomatis E/11023]: S-rich region from 2 to 95 corrected with score 56
>CTRA-E11-01-000767 	gi|296438460|gb|ADH20613.1| MAC/perforin family protein [Chlamydia trachomatis E/11023]: S-rich region from 383 to 549 corrected with score 86
>CTRA-E11-01-000773 	gi|296438454|gb|ADH20607.1| hypothetical protein E11023_00770 [Chlamydia trachomatis E/11023]: Q-rich region from 961 to 1155 corrected with score 41
>CTRA-E11-01-000776 	gi|296438451|gb|ADH20604.1| hypothetical protein E11023_00755 [Chlamydia trachomatis E/11023]: T-rich region from 2 to 62 corrected with score 47
>CTRA-E11-01-000794 	gi|296438433|gb|ADH20586.1| 30S ribosomal protein S9 [Chlamydia trachomatis E/11023]: K-rich region from 88 to 129 corrected with score 49
>CTRA-E11-01-000803 	gi|296438424|gb|ADH20577.1| inclusion membrane protein G [Chlamydia trachomatis E/11023]: S-rich region from 89 to 166 corrected with score 53
>CTRA-E11-01-000804 	gi|296438423|gb|ADH20576.1| inclusion membrane protein F [Chlamydia trachomatis E/11023]: A-rich region from 25 to 88 corrected with score 41
>CTRA-E11-01-000808 	gi|296438419|gb|ADH20572.1| chaperone-protease ClpB [Chlamydia trachomatis E/11023]: E-rich region from 412 to 534 corrected with score 58
>CTRA-E11-01-000817 	gi|296438410|gb|ADH20563.1| hypothetical protein E11023_00545 [Chlamydia trachomatis E/11023]: S-rich region from 2 to 229 corrected with score 104
>CTRA-E11-01-000817 	gi|296438410|gb|ADH20563.1| hypothetical protein E11023_00545 [Chlamydia trachomatis E/11023]: C-rich region from 308 to 350 corrected with score 47
>CTRA-E11-01-000826 	gi|296438401|gb|ADH20554.1| translation initiation factor IF-2 [Chlamydia trachomatis E/11023]: S-rich region from 33 to 290 corrected with score 89
>CTRA-E11-01-000826 	gi|296438401|gb|ADH20554.1| translation initiation factor IF-2 [Chlamydia trachomatis E/11023]: E-rich region from 123 to 159 corrected with score 43
>CTRA-E11-01-000826 	gi|296438401|gb|ADH20554.1| translation initiation factor IF-2 [Chlamydia trachomatis E/11023]: K-rich region from 2 to 57 corrected with score 42
>CTRA-E11-01-000832 	gi|296438395|gb|ADH20548.1| low calcium response protein D (predicted to be part of the TTSS apparatus) [Chlamydia trachomatis E/11023]: L-rich region from 27 to 91 corrected with score 51
>CTRA-E11-01-000833 	gi|296438394|gb|ADH20547.1| low calcium response protein E [Chlamydia trachomatis E/11023]: E-rich region from 61 to 127 corrected with score 54
>CTRA-E11-01-000833 	gi|296438394|gb|ADH20547.1| low calcium response protein E [Chlamydia trachomatis E/11023]: P-rich region from 385 to 421 corrected with score 47
>CTRA-E11-01-000840 	gi|296438387|gb|ADH20540.1| hypothetical protein E11023_00430 [Chlamydia trachomatis E/11023]: S-rich region from 2 to 387 corrected with score 95
>CTRA-E11-01-000851 	gi|296438376|gb|ADH20529.1| ABC transport protein, membrane permease [Chlamydia trachomatis E/11023]: V-rich region from 39 to 304 corrected with score 40
>CTRA-E11-01-000857 	gi|296438370|gb|ADH20523.1| ADP,ATP carrier protein [Chlamydia trachomatis E/11023]: A-rich region from 435 to 523 corrected with score 50
>CTRA-E11-01-000865 	gi|296438362|gb|ADH20515.1| hypothetical protein E11023_00305 [Chlamydia trachomatis E/11023]: P-rich region from 78 to 119 corrected with score 66
>CTRA-E11-01-000870 	gi|296438357|gb|ADH20510.1| hypothetical protein E11023_00280 [Chlamydia trachomatis E/11023]: E-rich region from 27 to 127 corrected with score 51
>CTRA-E11-01-000874 	gi|296438353|gb|ADH20506.1| hypothetical protein E11023_00260 [Chlamydia trachomatis E/11023]: S-rich region from 273 to 479 corrected with score 77
>CTRA-E11-01-000877 	gi|296438350|gb|ADH20503.1| histone-like protein 2 [Chlamydia trachomatis E/11023]: K-rich region from 5 to 192 corrected with score 160
>CTRA-E11-01-000877 	gi|296438350|gb|ADH20503.1| histone-like protein 2 [Chlamydia trachomatis E/11023]: A-rich region from 12 to 212 corrected with score 137
>CTRA-E11-01-000920 	gi|296438307|gb|ADH20460.1| hypothetical protein E11023_00030 [Chlamydia trachomatis E/11023]: S-rich region from 232 to 361 corrected with score 139
>CTRA-E11-01-000925 	gi|296438302|gb|ADH20455.1| hypothetical protein E11023_00005 [Chlamydia trachomatis E/11023]: S-rich region from 7 to 141 corrected with score 74
>CTRA-E15-01-000001 	gi|296435509|gb|ADH17687.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: S-rich region from 107 to 780 corrected with score 120
>CTRA-E15-01-000003 	gi|296435507|gb|ADH17685.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: S-rich region from 56 to 652 corrected with score 145
>CTRA-E15-01-000004 	gi|296435506|gb|ADH17684.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: S-rich region from 105 to 615 corrected with score 69
>CTRA-E15-01-000005 	gi|296435505|gb|ADH17683.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: S-rich region from 560 to 828 corrected with score 77
>CTRA-E15-01-000005 	gi|296435505|gb|ADH17683.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: T-rich region from 647 to 721 corrected with score 46
>CTRA-E15-01-000005 	gi|296435505|gb|ADH17683.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: S-rich region from 51 to 328 corrected with score 40
>CTRA-E15-01-000007 	gi|296435503|gb|ADH17681.1| hypothetical protein E150_04665 [Chlamydia trachomatis E/150]: P-rich region from 74 to 141 corrected with score 147
>CTRA-E15-01-000012 	gi|296435498|gb|ADH17676.1| hypothetical protein E150_04640 [Chlamydia trachomatis E/150]: Y-rich region from 52 to 64 corrected with score 41
>CTRA-E15-01-000012 	gi|296435498|gb|ADH17676.1| hypothetical protein E150_04640 [Chlamydia trachomatis E/150]: K-rich region from 78 to 101 corrected with score 40
>CTRA-E15-01-000013 	gi|296435497|gb|ADH17675.1| hypothetical protein E150_04630 [Chlamydia trachomatis E/150]: S-rich region from 8 to 335 corrected with score 118
>CTRA-E15-01-000013 	gi|296435497|gb|ADH17675.1| hypothetical protein E150_04630 [Chlamydia trachomatis E/150]: E-rich region from 235 to 283 corrected with score 49
>CTRA-E15-01-000016 	gi|296435494|gb|ADH17672.1| hypothetical protein E150_04615 [Chlamydia trachomatis E/150]: S-rich region from 12 to 280 corrected with score 93
>CTRA-E15-01-000016 	gi|296435494|gb|ADH17672.1| hypothetical protein E150_04615 [Chlamydia trachomatis E/150]: E-rich region from 227 to 267 corrected with score 46
>CTRA-E15-01-000026 	gi|296435484|gb|ADH17662.1| hypothetical protein E150_04565 [Chlamydia trachomatis E/150]: E-rich region from 141 to 310 corrected with score 46
>CTRA-E15-01-000028 	gi|296435482|gb|ADH17660.1| hypothetical protein E150_04555 [Chlamydia trachomatis E/150]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-E15-01-000044 	gi|296435466|gb|ADH17644.1| 50S ribosomal protein L35 [Chlamydia trachomatis E/150]: K-rich region from 3 to 47 corrected with score 40
>CTRA-E15-01-000055 	gi|296435455|gb|ADH17633.1| metalloprotease-insulinase [Chlamydia trachomatis E/150]: E-rich region from 468 to 508 corrected with score 42
>CTRA-E15-01-000060 	gi|296435450|gb|ADH17628.1| putative membrane transport protein [Chlamydia trachomatis E/150]: L-rich region from 141 to 186 corrected with score 50
>CTRA-E15-01-000068 	gi|296435442|gb|ADH17620.1| candidate inclusion membrane protein [Chlamydia trachomatis E/150]: E-rich region from 72 to 231 corrected with score 81
>CTRA-E15-01-000070 	gi|296435440|gb|ADH17618.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: S-rich region from 121 to 671 corrected with score 60
>CTRA-E15-01-000091 	gi|296435419|gb|ADH17597.1| hypothetical protein E150_04240 [Chlamydia trachomatis E/150]: A-rich region from 17 to 68 corrected with score 44
>CTRA-E15-01-000100 	gi|296435410|gb|ADH17588.1| 30S ribosomal protein S14 [Chlamydia trachomatis E/150]: K-rich region from 3 to 53 corrected with score 44
>CTRA-E15-01-000120 	gi|296435390|gb|ADH17568.1| hypothetical protein E150_04095 [Chlamydia trachomatis E/150]: E-rich region from 313 to 447 corrected with score 41
>CTRA-E15-01-000139 	gi|296435371|gb|ADH17549.1| transketolase [Chlamydia trachomatis E/150]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-E15-01-000140 	gi|296435370|gb|ADH17548.1| hypothetical protein E150_03995 [Chlamydia trachomatis E/150]: F-rich region from 35 to 65 corrected with score 40
>CTRA-E15-01-000147 	gi|296435363|gb|ADH17541.1| histone H1--like developmental protein [Chlamydia trachomatis E/150]: K-rich region from 4 to 125 corrected with score 110
>CTRA-E15-01-000182 	gi|296435328|gb|ADH17506.1| hypothetical protein E150_03785 [Chlamydia trachomatis E/150]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-E15-01-000185 	gi|296435325|gb|ADH17503.1| SWF/SNF family helicase [Chlamydia trachomatis E/150]: E-rich region from 103 to 140 corrected with score 41
>CTRA-E15-01-000187 	gi|296435323|gb|ADH17501.1| trigger factor [Chlamydia trachomatis E/150]: E-rich region from 255 to 361 corrected with score 46
>CTRA-E15-01-000191 	gi|296435319|gb|ADH17497.1| GTP-binding protein EngA [Chlamydia trachomatis E/150]: E-rich region from 169 to 212 corrected with score 40
>CTRA-E15-01-000199 	gi|296435311|gb|ADH17489.1| hypothetical protein E150_03700 [Chlamydia trachomatis E/150]: S-rich region from 2 to 77 corrected with score 41
>CTRA-E15-01-000222 	gi|296435288|gb|ADH17466.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis E/150]: Q-rich region from 127 to 245 corrected with score 62
>CTRA-E15-01-000225 	gi|296435285|gb|ADH17463.1| hypothetical protein E150_03570 [Chlamydia trachomatis E/150]: S-rich region from 37 to 124 corrected with score 45
>CTRA-E15-01-000225 	gi|296435285|gb|ADH17463.1| hypothetical protein E150_03570 [Chlamydia trachomatis E/150]: E-rich region from 251 to 279 corrected with score 42
>CTRA-E15-01-000226 	gi|296435284|gb|ADH17462.1| hypothetical protein E150_03565 [Chlamydia trachomatis E/150]: E-rich region from 13 to 168 corrected with score 114
>CTRA-E15-01-000232 	gi|296435278|gb|ADH17456.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis E/150]: E-rich region from 100 to 344 corrected with score 168
>CTRA-E15-01-000232 	gi|296435278|gb|ADH17456.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis E/150]: S-rich region from 109 to 333 corrected with score 108
>CTRA-E15-01-000236 	gi|296435274|gb|ADH17452.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis E/150]: K-rich region from 307 to 384 corrected with score 55
>CTRA-E15-01-000256 	gi|296435254|gb|ADH17432.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis E/150]: E-rich region from 437 to 474 corrected with score 49
>CTRA-E15-01-000256 	gi|296435254|gb|ADH17432.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis E/150]: K-rich region from 744 to 781 corrected with score 49
>CTRA-E15-01-000257 	gi|296435253|gb|ADH17431.1| hypothetical protein E150_03405 [Chlamydia trachomatis E/150]: F-rich region from 169 to 204 corrected with score 47
>CTRA-E15-01-000264 	gi|296435246|gb|ADH17424.1| hypothetical protein E150_03370 [Chlamydia trachomatis E/150]: K-rich region from 101 to 140 corrected with score 44
>CTRA-E15-01-000280 	gi|296435230|gb|ADH17408.1| hypothetical protein E150_03290 [Chlamydia trachomatis E/150]: S-rich region from 2 to 603 corrected with score 204
>CTRA-E15-01-000282 	gi|296435228|gb|ADH17406.1| hypothetical protein E150_03280 [Chlamydia trachomatis E/150]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-E15-01-000285 	gi|296435225|gb|ADH17403.1| hypothetical protein E150_03265 [Chlamydia trachomatis E/150]: S-rich region from 16 to 83 corrected with score 46
>CTRA-E15-01-000286 	gi|296435224|gb|ADH17402.1| 30S ribosomal protein S20 [Chlamydia trachomatis E/150]: K-rich region from 4 to 45 corrected with score 47
>CTRA-E15-01-000287 	gi|296435223|gb|ADH17401.1| putative integral membrane protein [Chlamydia trachomatis E/150]: Q-rich region from 85 to 225 corrected with score 68
>CTRA-E15-01-000303 	gi|296435207|gb|ADH17385.1| putative soluble transglycosylase [Chlamydia trachomatis E/150]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-E15-01-000306 	gi|296435204|gb|ADH17382.1| histone H1-I [Chlamydia trachomatis E/150]: P-rich region from 47 to 106 corrected with score 61
>CTRA-E15-01-000306 	gi|296435204|gb|ADH17382.1| histone H1-I [Chlamydia trachomatis E/150]: K-rich region from 30 to 115 corrected with score 43
>CTRA-E15-01-000325 	gi|296435185|gb|ADH17363.1| hypothetical protein E150_03055 [Chlamydia trachomatis E/150]: S-rich region from 20 to 436 corrected with score 196
>CTRA-E15-01-000325 	gi|296435185|gb|ADH17363.1| hypothetical protein E150_03055 [Chlamydia trachomatis E/150]: A-rich region from 231 to 313 corrected with score 58
>CTRA-E15-01-000325 	gi|296435185|gb|ADH17363.1| hypothetical protein E150_03055 [Chlamydia trachomatis E/150]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-E15-01-000325 	gi|296435185|gb|ADH17363.1| hypothetical protein E150_03055 [Chlamydia trachomatis E/150]: Q-rich region from 162 to 199 corrected with score 40
>CTRA-E15-01-000326 	gi|296435184|gb|ADH17362.1| putative type III secretion system membrane protein [Chlamydia trachomatis E/150]: S-rich region from 2 to 308 corrected with score 126
>CTRA-E15-01-000326 	gi|296435184|gb|ADH17362.1| putative type III secretion system membrane protein [Chlamydia trachomatis E/150]: A-rich region from 278 to 487 corrected with score 94
>CTRA-E15-01-000328 	gi|296435182|gb|ADH17360.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis E/150]: K-rich region from 177 to 232 corrected with score 48
>CTRA-E15-01-000332 	gi|296435178|gb|ADH17356.1| general secretion pathway protein D [Chlamydia trachomatis E/150]: S-rich region from 388 to 444 corrected with score 54
>CTRA-E15-01-000340 	gi|296435170|gb|ADH17348.1| type III secretion system, membrane protein [Chlamydia trachomatis E/150]: M-rich region from 164 to 256 corrected with score 47
>CTRA-E15-01-000342 	gi|296435168|gb|ADH17346.1| type III secretion system protein [Chlamydia trachomatis E/150]: L-rich region from 93 to 121 corrected with score 44
>CTRA-E15-01-000342 	gi|296435168|gb|ADH17346.1| type III secretion system protein [Chlamydia trachomatis E/150]: M-rich region from 229 to 303 corrected with score 41
>CTRA-E15-01-000346 	gi|296435164|gb|ADH17342.1| type III secretion system protein, membrane component [Chlamydia trachomatis E/150]: E-rich region from 287 to 325 corrected with score 41
>CTRA-E15-01-000361 	gi|296435149|gb|ADH17327.1| putative sugar phosphate permease [Chlamydia trachomatis E/150]: E-rich region from 221 to 252 corrected with score 43
>CTRA-E15-01-000376 	gi|296435134|gb|ADH17312.1| hypothetical protein E150_02800 [Chlamydia trachomatis E/150]: A-rich region from 43 to 214 corrected with score 42
>CTRA-E15-01-000394 	gi|296435116|gb|ADH17294.1| 50S ribosomal protein L15 [Chlamydia trachomatis E/150]: G-rich region from 21 to 55 corrected with score 42
>CTRA-E15-01-000397 	gi|296435113|gb|ADH17291.1| 30S ribosomal protein S11 [Chlamydia trachomatis E/150]: A-rich region from 48 to 107 corrected with score 43
>CTRA-E15-01-000401 	gi|296435109|gb|ADH17287.1| hypothetical protein E150_02675 [Chlamydia trachomatis E/150]: E-rich region from 138 to 288 corrected with score 66
>CTRA-E15-01-000401 	gi|296435109|gb|ADH17287.1| hypothetical protein E150_02675 [Chlamydia trachomatis E/150]: K-rich region from 138 to 164 corrected with score 49
>CTRA-E15-01-000402 	gi|296435108|gb|ADH17286.1| hypothetical protein E150_02670 [Chlamydia trachomatis E/150]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-E15-01-000416 	gi|296435094|gb|ADH17272.1| transcription termination factor Rho [Chlamydia trachomatis E/150]: E-rich region from 2 to 44 corrected with score 40
>CTRA-E15-01-000423 	gi|296435087|gb|ADH17265.1| hypothetical protein E150_02565 [Chlamydia trachomatis E/150]: L-rich region from 20 to 81 corrected with score 50
>CTRA-E15-01-000453 	gi|296435057|gb|ADH17235.1| hypothetical protein E150_02410 [Chlamydia trachomatis E/150]: S-rich region from 2 to 796 corrected with score 345
>CTRA-E15-01-000453 	gi|296435057|gb|ADH17235.1| hypothetical protein E150_02410 [Chlamydia trachomatis E/150]: T-rich region from 11 to 116 corrected with score 90
>CTRA-E15-01-000453 	gi|296435057|gb|ADH17235.1| hypothetical protein E150_02410 [Chlamydia trachomatis E/150]: T-rich region from 487 to 532 corrected with score 55
>CTRA-E15-01-000474 	gi|296435036|gb|ADH17214.1| 30S ribosomal protein S12 [Chlamydia trachomatis E/150]: K-rich region from 9 to 51 corrected with score 42
>CTRA-E15-01-000498 	gi|296435012|gb|ADH17190.1| GTPase ObgE [Chlamydia trachomatis E/150]: G-rich region from 31 to 43 corrected with score 43
>CTRA-E15-01-000499 	gi|296435011|gb|ADH17189.1| metal transporter, membrane permease component [Chlamydia trachomatis E/150]: L-rich region from 186 to 273 corrected with score 56
>CTRA-E15-01-000502 	gi|296435008|gb|ADH17186.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: S-rich region from 5 to 1367 corrected with score 528
>CTRA-E15-01-000502 	gi|296435008|gb|ADH17186.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: T-rich region from 1340 to 1364 corrected with score 53
>CTRA-E15-01-000502 	gi|296435008|gb|ADH17186.1| polymorphic outer membrane protein [Chlamydia trachomatis E/150]: E-rich region from 625 to 733 corrected with score 49
>CTRA-E15-01-000503 	gi|296435007|gb|ADH17185.1| putative outer membrane protein B [Chlamydia trachomatis E/150]: S-rich region from 31 to 1336 corrected with score 503
>CTRA-E15-01-000503 	gi|296435007|gb|ADH17185.1| putative outer membrane protein B [Chlamydia trachomatis E/150]: A-rich region from 801 to 841 corrected with score 51
>CTRA-E15-01-000503 	gi|296435007|gb|ADH17185.1| putative outer membrane protein B [Chlamydia trachomatis E/150]: T-rich region from 35 to 99 corrected with score 45
>CTRA-E15-01-000518 	gi|296434992|gb|ADH17170.1| hypothetical protein E150_02085 [Chlamydia trachomatis E/150]: E-rich region from 25 to 174 corrected with score 66
>CTRA-E15-01-000519 	gi|296434991|gb|ADH17169.1| exoribonuclease II [Chlamydia trachomatis E/150]: K-rich region from 653 to 694 corrected with score 81
>CTRA-E15-01-000520 	gi|296434990|gb|ADH17168.1| molecular chaperone DnaK [Chlamydia trachomatis E/150]: S-rich region from 575 to 647 corrected with score 56
>CTRA-E15-01-000520 	gi|296434990|gb|ADH17168.1| molecular chaperone DnaK [Chlamydia trachomatis E/150]: E-rich region from 493 to 577 corrected with score 52
>CTRA-E15-01-000521 	gi|296434989|gb|ADH17167.1| HSP-70 cofactor [Chlamydia trachomatis E/150]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-E15-01-000524 	gi|296434986|gb|ADH17164.1| hypothetical protein E150_02055 [Chlamydia trachomatis E/150]: S-rich region from 2 to 133 corrected with score 45
>CTRA-E15-01-000537 	gi|296434973|gb|ADH17151.1| putative nucleotide-binding protein [Chlamydia trachomatis E/150]: R-rich region from 193 to 225 corrected with score 42
>CTRA-E15-01-000543 	gi|296434967|gb|ADH17145.1| hypothetical protein E150_01960 [Chlamydia trachomatis E/150]: H-rich region from 5 to 20 corrected with score 48
>CTRA-E15-01-000555 	gi|296434955|gb|ADH17133.1| hypothetical protein E150_01900 [Chlamydia trachomatis E/150]: E-rich region from 41 to 208 corrected with score 63
>CTRA-E15-01-000558 	gi|296434952|gb|ADH17130.1| putative inner membrane protein [Chlamydia trachomatis E/150]: S-rich region from 10 to 32 corrected with score 44
>CTRA-E15-01-000565 	gi|296434945|gb|ADH17123.1| preprotein translocase subunit SecG [Chlamydia trachomatis E/150]: L-rich region from 1 to 25 corrected with score 41
>CTRA-E15-01-000576 	gi|296434934|gb|ADH17112.1| chaperone protein DnaJ [Chlamydia trachomatis E/150]: G-rich region from 67 to 134 corrected with score 74
>CTRA-E15-01-000584 	gi|296434926|gb|ADH17104.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis E/150]: S-rich region from 375 to 443 corrected with score 49
>CTRA-E15-01-000585 	gi|296434925|gb|ADH17103.1| excinuclease ABC subunit A [Chlamydia trachomatis E/150]: P-rich region from 918 to 934 corrected with score 40
>CTRA-E15-01-000594 	gi|296434916|gb|ADH17094.1| hypothetical protein E150_01700 [Chlamydia trachomatis E/150]: S-rich region from 6 to 55 corrected with score 41
>CTRA-E15-01-000605 	gi|296434905|gb|ADH17083.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis E/150]: A-rich region from 34 to 56 corrected with score 45
>CTRA-E15-01-000611 	gi|296434899|gb|ADH17077.1| V-type ATP synthase subunit E [Chlamydia trachomatis E/150]: E-rich region from 18 to 70 corrected with score 40
>CTRA-E15-01-000631 	gi|296434879|gb|ADH17057.1| hypothetical protein E150_01505 [Chlamydia trachomatis E/150]: K-rich region from 70 to 300 corrected with score 90
>CTRA-E15-01-000631 	gi|296434879|gb|ADH17057.1| hypothetical protein E150_01505 [Chlamydia trachomatis E/150]: A-rich region from 178 to 308 corrected with score 50
>CTRA-E15-01-000632 	gi|296434878|gb|ADH17056.1| candidate inclusion membrane protein [Chlamydia trachomatis E/150]: A-rich region from 32 to 93 corrected with score 54
>CTRA-E15-01-000635 	gi|296434875|gb|ADH17053.1| ATP-dependent Clp protease [Chlamydia trachomatis E/150]: E-rich region from 443 to 500 corrected with score 57
>CTRA-E15-01-000635 	gi|296434875|gb|ADH17053.1| ATP-dependent Clp protease [Chlamydia trachomatis E/150]: S-rich region from 153 to 171 corrected with score 44
>CTRA-E15-01-000645 	gi|296434865|gb|ADH17043.1| hypothetical protein E150_01435 [Chlamydia trachomatis E/150]: E-rich region from 32 to 82 corrected with score 40
>CTRA-E15-01-000693 	gi|296434817|gb|ADH16995.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis E/150]: L-rich region from 16 to 105 corrected with score 41
>CTRA-E15-01-000694 	gi|296434816|gb|ADH16994.1| hypothetical protein E150_01190 [Chlamydia trachomatis E/150]: A-rich region from 8 to 74 corrected with score 40
>CTRA-E15-01-000695 	gi|296434815|gb|ADH16993.1| hypothetical protein E150_01185 [Chlamydia trachomatis E/150]: V-rich region from 37 to 76 corrected with score 40
>CTRA-E15-01-000700 	gi|296434810|gb|ADH16988.1| hypothetical protein E150_01160 [Chlamydia trachomatis E/150]: D-rich region from 248 to 262 corrected with score 41
>CTRA-E15-01-000705 	gi|296434805|gb|ADH16983.1| prenyltransferase [Chlamydia trachomatis E/150]: L-rich region from 90 to 162 corrected with score 44
>CTRA-E15-01-000710 	gi|296434800|gb|ADH16978.1| hypothetical protein E150_01110 [Chlamydia trachomatis E/150]: V-rich region from 37 to 98 corrected with score 43
>CTRA-E15-01-000750 	gi|296434760|gb|ADH16938.1| hypothetical protein E150_00910 [Chlamydia trachomatis E/150]: K-rich region from 107 to 158 corrected with score 41
>CTRA-E15-01-000758 	gi|296434752|gb|ADH16930.1| hypothetical protein E150_00870 [Chlamydia trachomatis E/150]: K-rich region from 29 to 142 corrected with score 57
>CTRA-E15-01-000765 	gi|296434745|gb|ADH16923.1| phospholipase D endonuclease superfamily protein [Chlamydia trachomatis E/150]: S-rich region from 2 to 95 corrected with score 56
>CTRA-E15-01-000768 	gi|296434742|gb|ADH16920.1| MAC/perforin family protein [Chlamydia trachomatis E/150]: S-rich region from 383 to 549 corrected with score 86
>CTRA-E15-01-000774 	gi|296434736|gb|ADH16914.1| hypothetical protein E150_00780 [Chlamydia trachomatis E/150]: Q-rich region from 961 to 1155 corrected with score 41
>CTRA-E15-01-000777 	gi|296434733|gb|ADH16911.1| hypothetical protein E150_00765 [Chlamydia trachomatis E/150]: T-rich region from 2 to 62 corrected with score 47
>CTRA-E15-01-000795 	gi|296434715|gb|ADH16893.1| 30S ribosomal protein S9 [Chlamydia trachomatis E/150]: K-rich region from 88 to 129 corrected with score 49
>CTRA-E15-01-000804 	gi|296434706|gb|ADH16884.1| inclusion membrane protein G [Chlamydia trachomatis E/150]: S-rich region from 89 to 166 corrected with score 53
>CTRA-E15-01-000805 	gi|296434705|gb|ADH16883.1| inclusion membrane protein F [Chlamydia trachomatis E/150]: A-rich region from 25 to 88 corrected with score 41
>CTRA-E15-01-000809 	gi|296434701|gb|ADH16879.1| chaperone-protease ClpB [Chlamydia trachomatis E/150]: E-rich region from 412 to 534 corrected with score 58
>CTRA-E15-01-000818 	gi|296434692|gb|ADH16870.1| hypothetical protein E150_00555 [Chlamydia trachomatis E/150]: S-rich region from 2 to 229 corrected with score 104
>CTRA-E15-01-000818 	gi|296434692|gb|ADH16870.1| hypothetical protein E150_00555 [Chlamydia trachomatis E/150]: C-rich region from 308 to 350 corrected with score 47
>CTRA-E15-01-000826 	gi|296434684|gb|ADH16862.1| translation initiation factor IF-2 [Chlamydia trachomatis E/150]: S-rich region from 33 to 286 corrected with score 104
>CTRA-E15-01-000826 	gi|296434684|gb|ADH16862.1| translation initiation factor IF-2 [Chlamydia trachomatis E/150]: K-rich region from 2 to 57 corrected with score 43
>CTRA-E15-01-000826 	gi|296434684|gb|ADH16862.1| translation initiation factor IF-2 [Chlamydia trachomatis E/150]: E-rich region from 123 to 156 corrected with score 40
>CTRA-E15-01-000832 	gi|296434678|gb|ADH16856.1| low calcium response protein D (predicted to be part of the TTSS apparatus) [Chlamydia trachomatis E/150]: L-rich region from 27 to 91 corrected with score 51
>CTRA-E15-01-000833 	gi|296434677|gb|ADH16855.1| low calcium response protein E [Chlamydia trachomatis E/150]: E-rich region from 61 to 127 corrected with score 54
>CTRA-E15-01-000833 	gi|296434677|gb|ADH16855.1| low calcium response protein E [Chlamydia trachomatis E/150]: P-rich region from 385 to 421 corrected with score 47
>CTRA-E15-01-000840 	gi|296434670|gb|ADH16848.1| hypothetical protein E150_00435 [Chlamydia trachomatis E/150]: S-rich region from 2 to 387 corrected with score 95
>CTRA-E15-01-000851 	gi|296434659|gb|ADH16837.1| ABC transport protein, membrane permease [Chlamydia trachomatis E/150]: V-rich region from 39 to 304 corrected with score 40
>CTRA-E15-01-000857 	gi|296434653|gb|ADH16831.1| ADP,ATP carrier protein [Chlamydia trachomatis E/150]: A-rich region from 435 to 523 corrected with score 50
>CTRA-E15-01-000865 	gi|296434645|gb|ADH16823.1| hypothetical protein E150_00310 [Chlamydia trachomatis E/150]: P-rich region from 78 to 119 corrected with score 66
>CTRA-E15-01-000871 	gi|296434639|gb|ADH16817.1| hypothetical protein E150_00280 [Chlamydia trachomatis E/150]: E-rich region from 27 to 127 corrected with score 51
>CTRA-E15-01-000875 	gi|296434635|gb|ADH16813.1| hypothetical protein E150_00260 [Chlamydia trachomatis E/150]: S-rich region from 170 to 481 corrected with score 93
>CTRA-E15-01-000878 	gi|296434632|gb|ADH16810.1| histone-like protein 2 [Chlamydia trachomatis E/150]: K-rich region from 5 to 192 corrected with score 160
>CTRA-E15-01-000878 	gi|296434632|gb|ADH16810.1| histone-like protein 2 [Chlamydia trachomatis E/150]: A-rich region from 12 to 212 corrected with score 137
>CTRA-E15-01-000921 	gi|296434589|gb|ADH16767.1| hypothetical protein E150_00030 [Chlamydia trachomatis E/150]: S-rich region from 232 to 361 corrected with score 138
>CTRA-E15-01-000926 	gi|296434584|gb|ADH16762.1| hypothetical protein E150_00005 [Chlamydia trachomatis E/150]: S-rich region from 2 to 141 corrected with score 74
>CTRA-G22-01-000001 	gi|296437364|gb|ADH19534.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: S-rich region from 107 to 780 corrected with score 120
>CTRA-G22-01-000003 	gi|296437362|gb|ADH19532.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: S-rich region from 56 to 652 corrected with score 145
>CTRA-G22-01-000004 	gi|296437361|gb|ADH19531.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: S-rich region from 105 to 615 corrected with score 69
>CTRA-G22-01-000005 	gi|296437360|gb|ADH19530.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: S-rich region from 560 to 828 corrected with score 77
>CTRA-G22-01-000005 	gi|296437360|gb|ADH19530.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: T-rich region from 647 to 721 corrected with score 46
>CTRA-G22-01-000006 	gi|296437359|gb|ADH19529.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: S-rich region from 343 to 599 corrected with score 50
>CTRA-G22-01-000007 	gi|296437358|gb|ADH19528.1| hypothetical protein G11222_04655 [Chlamydia trachomatis G/11222]: P-rich region from 74 to 143 corrected with score 151
>CTRA-G22-01-000012 	gi|296437353|gb|ADH19523.1| hypothetical protein G11222_04630 [Chlamydia trachomatis G/11222]: Y-rich region from 52 to 64 corrected with score 41
>CTRA-G22-01-000012 	gi|296437353|gb|ADH19523.1| hypothetical protein G11222_04630 [Chlamydia trachomatis G/11222]: K-rich region from 78 to 101 corrected with score 40
>CTRA-G22-01-000013 	gi|296437352|gb|ADH19522.1| hypothetical protein G11222_04625 [Chlamydia trachomatis G/11222]: S-rich region from 8 to 335 corrected with score 119
>CTRA-G22-01-000013 	gi|296437352|gb|ADH19522.1| hypothetical protein G11222_04625 [Chlamydia trachomatis G/11222]: E-rich region from 235 to 283 corrected with score 51
>CTRA-G22-01-000016 	gi|296437349|gb|ADH19519.1| hypothetical protein G11222_04610 [Chlamydia trachomatis G/11222]: S-rich region from 12 to 280 corrected with score 93
>CTRA-G22-01-000016 	gi|296437349|gb|ADH19519.1| hypothetical protein G11222_04610 [Chlamydia trachomatis G/11222]: E-rich region from 227 to 267 corrected with score 46
>CTRA-G22-01-000026 	gi|296437339|gb|ADH19509.1| hypothetical protein G11222_04560 [Chlamydia trachomatis G/11222]: E-rich region from 141 to 310 corrected with score 46
>CTRA-G22-01-000028 	gi|296437337|gb|ADH19507.1| hypothetical protein G11222_04550 [Chlamydia trachomatis G/11222]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-G22-01-000044 	gi|296437321|gb|ADH19491.1| 50S ribosomal protein L35 [Chlamydia trachomatis G/11222]: K-rich region from 3 to 47 corrected with score 40
>CTRA-G22-01-000055 	gi|296437310|gb|ADH19480.1| metalloprotease-insulinase [Chlamydia trachomatis G/11222]: E-rich region from 468 to 508 corrected with score 42
>CTRA-G22-01-000060 	gi|296437305|gb|ADH19475.1| putative membrane transport protein [Chlamydia trachomatis G/11222]: L-rich region from 141 to 186 corrected with score 50
>CTRA-G22-01-000068 	gi|296437297|gb|ADH19467.1| candidate inclusion membrane protein [Chlamydia trachomatis G/11222]: E-rich region from 125 to 231 corrected with score 85
>CTRA-G22-01-000070 	gi|296437295|gb|ADH19465.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: S-rich region from 121 to 671 corrected with score 60
>CTRA-G22-01-000090 	gi|296437275|gb|ADH19445.1| hypothetical protein G11222_04235 [Chlamydia trachomatis G/11222]: A-rich region from 17 to 68 corrected with score 46
>CTRA-G22-01-000099 	gi|296437266|gb|ADH19436.1| 30S ribosomal protein S14 [Chlamydia trachomatis G/11222]: K-rich region from 3 to 53 corrected with score 40
>CTRA-G22-01-000107 	gi|296437258|gb|ADH19428.1| hypothetical protein G11222_04150 [Chlamydia trachomatis G/11222]: P-rich region from 43 to 78 corrected with score 45
>CTRA-G22-01-000119 	gi|296437246|gb|ADH19416.1| hypothetical protein G11222_04090 [Chlamydia trachomatis G/11222]: E-rich region from 313 to 451 corrected with score 41
>CTRA-G22-01-000138 	gi|296437227|gb|ADH19397.1| transketolase [Chlamydia trachomatis G/11222]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-G22-01-000139 	gi|296437226|gb|ADH19396.1| hypothetical protein G11222_03990 [Chlamydia trachomatis G/11222]: F-rich region from 35 to 65 corrected with score 44
>CTRA-G22-01-000146 	gi|296437219|gb|ADH19389.1| histone H1--like developmental protein [Chlamydia trachomatis G/11222]: K-rich region from 4 to 125 corrected with score 110
>CTRA-G22-01-000146 	gi|296437219|gb|ADH19389.1| histone H1--like developmental protein [Chlamydia trachomatis G/11222]: A-rich region from 64 to 117 corrected with score 42
>CTRA-G22-01-000180 	gi|296437185|gb|ADH19355.1| hypothetical protein G11222_03785 [Chlamydia trachomatis G/11222]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-G22-01-000183 	gi|296437182|gb|ADH19352.1| SWF/SNF family helicase [Chlamydia trachomatis G/11222]: E-rich region from 103 to 140 corrected with score 41
>CTRA-G22-01-000185 	gi|296437180|gb|ADH19350.1| trigger factor [Chlamydia trachomatis G/11222]: E-rich region from 255 to 361 corrected with score 46
>CTRA-G22-01-000189 	gi|296437176|gb|ADH19346.1| GTP-binding protein EngA [Chlamydia trachomatis G/11222]: E-rich region from 169 to 212 corrected with score 40
>CTRA-G22-01-000197 	gi|296437168|gb|ADH19338.1| hypothetical protein G11222_03700 [Chlamydia trachomatis G/11222]: S-rich region from 2 to 77 corrected with score 41
>CTRA-G22-01-000222 	gi|296437143|gb|ADH19313.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis G/11222]: Q-rich region from 127 to 245 corrected with score 66
>CTRA-G22-01-000225 	gi|296437140|gb|ADH19310.1| hypothetical protein G11222_03560 [Chlamydia trachomatis G/11222]: E-rich region from 16 to 89 corrected with score 44
>CTRA-G22-01-000225 	gi|296437140|gb|ADH19310.1| hypothetical protein G11222_03560 [Chlamydia trachomatis G/11222]: E-rich region from 252 to 280 corrected with score 42
>CTRA-G22-01-000226 	gi|296437139|gb|ADH19309.1| hypothetical protein G11222_03555 [Chlamydia trachomatis G/11222]: E-rich region from 13 to 168 corrected with score 111
>CTRA-G22-01-000232 	gi|296437133|gb|ADH19303.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis G/11222]: E-rich region from 100 to 344 corrected with score 168
>CTRA-G22-01-000232 	gi|296437133|gb|ADH19303.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis G/11222]: S-rich region from 109 to 333 corrected with score 108
>CTRA-G22-01-000235 	gi|296437130|gb|ADH19300.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/11222]: K-rich region from 307 to 384 corrected with score 55
>CTRA-G22-01-000255 	gi|296437110|gb|ADH19280.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis G/11222]: K-rich region from 744 to 781 corrected with score 50
>CTRA-G22-01-000255 	gi|296437110|gb|ADH19280.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis G/11222]: E-rich region from 437 to 474 corrected with score 49
>CTRA-G22-01-000257 	gi|296437108|gb|ADH19278.1| hypothetical protein G11222_03395 [Chlamydia trachomatis G/11222]: F-rich region from 169 to 204 corrected with score 48
>CTRA-G22-01-000264 	gi|296437101|gb|ADH19271.1| hypothetical protein G11222_03360 [Chlamydia trachomatis G/11222]: K-rich region from 101 to 140 corrected with score 44
>CTRA-G22-01-000279 	gi|296437086|gb|ADH19256.1| CHLPN 76 kDa-like protein [Chlamydia trachomatis G/11222]: S-rich region from 2 to 601 corrected with score 181
>CTRA-G22-01-000280 	gi|296437085|gb|ADH19255.1| hypothetical protein G11222_03280 [Chlamydia trachomatis G/11222]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-G22-01-000283 	gi|296437082|gb|ADH19252.1| hypothetical protein G11222_03265 [Chlamydia trachomatis G/11222]: S-rich region from 8 to 83 corrected with score 42
>CTRA-G22-01-000284 	gi|296437081|gb|ADH19251.1| 30S ribosomal protein S20 [Chlamydia trachomatis G/11222]: K-rich region from 4 to 45 corrected with score 47
>CTRA-G22-01-000285 	gi|296437080|gb|ADH19250.1| putative integral membrane protein [Chlamydia trachomatis G/11222]: Q-rich region from 85 to 225 corrected with score 65
>CTRA-G22-01-000301 	gi|296437064|gb|ADH19234.1| invasin repeat-containing phosphatase [Chlamydia trachomatis G/11222]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-G22-01-000304 	gi|296437061|gb|ADH19231.1| histone H1-I [Chlamydia trachomatis G/11222]: P-rich region from 47 to 101 corrected with score 60
>CTRA-G22-01-000304 	gi|296437061|gb|ADH19231.1| histone H1-I [Chlamydia trachomatis G/11222]: K-rich region from 30 to 115 corrected with score 42
>CTRA-G22-01-000324 	gi|296437041|gb|ADH19211.1| hypothetical protein G11222_03050 [Chlamydia trachomatis G/11222]: S-rich region from 20 to 436 corrected with score 197
>CTRA-G22-01-000324 	gi|296437041|gb|ADH19211.1| hypothetical protein G11222_03050 [Chlamydia trachomatis G/11222]: A-rich region from 231 to 313 corrected with score 50
>CTRA-G22-01-000324 	gi|296437041|gb|ADH19211.1| hypothetical protein G11222_03050 [Chlamydia trachomatis G/11222]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-G22-01-000325 	gi|296437040|gb|ADH19210.1| putative type III secretion system membrane protein [Chlamydia trachomatis G/11222]: S-rich region from 2 to 308 corrected with score 127
>CTRA-G22-01-000325 	gi|296437040|gb|ADH19210.1| putative type III secretion system membrane protein [Chlamydia trachomatis G/11222]: A-rich region from 278 to 487 corrected with score 94
>CTRA-G22-01-000327 	gi|296437038|gb|ADH19208.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis G/11222]: K-rich region from 177 to 232 corrected with score 58
>CTRA-G22-01-000331 	gi|296437034|gb|ADH19204.1| general secretion pathway protein D [Chlamydia trachomatis G/11222]: S-rich region from 388 to 444 corrected with score 48
>CTRA-G22-01-000339 	gi|296437026|gb|ADH19196.1| type III secretion system, membrane protein [Chlamydia trachomatis G/11222]: M-rich region from 164 to 256 corrected with score 47
>CTRA-G22-01-000341 	gi|296437024|gb|ADH19194.1| type III secretion system protein [Chlamydia trachomatis G/11222]: L-rich region from 93 to 121 corrected with score 44
>CTRA-G22-01-000341 	gi|296437024|gb|ADH19194.1| type III secretion system protein [Chlamydia trachomatis G/11222]: M-rich region from 229 to 303 corrected with score 41
>CTRA-G22-01-000345 	gi|296437020|gb|ADH19190.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/11222]: E-rich region from 287 to 325 corrected with score 42
>CTRA-G22-01-000360 	gi|296437005|gb|ADH19175.1| putative sugar phosphate permease [Chlamydia trachomatis G/11222]: E-rich region from 221 to 252 corrected with score 43
>CTRA-G22-01-000375 	gi|296436990|gb|ADH19160.1| hypothetical protein G11222_02785 [Chlamydia trachomatis G/11222]: A-rich region from 43 to 214 corrected with score 57
>CTRA-G22-01-000393 	gi|296436972|gb|ADH19142.1| 50S ribosomal protein L15 [Chlamydia trachomatis G/11222]: G-rich region from 21 to 55 corrected with score 42
>CTRA-G22-01-000396 	gi|296436969|gb|ADH19139.1| 30S ribosomal protein S11 [Chlamydia trachomatis G/11222]: A-rich region from 48 to 107 corrected with score 43
>CTRA-G22-01-000400 	gi|296436965|gb|ADH19135.1| hypothetical protein G11222_02660 [Chlamydia trachomatis G/11222]: E-rich region from 138 to 288 corrected with score 64
>CTRA-G22-01-000400 	gi|296436965|gb|ADH19135.1| hypothetical protein G11222_02660 [Chlamydia trachomatis G/11222]: K-rich region from 138 to 164 corrected with score 49
>CTRA-G22-01-000401 	gi|296436964|gb|ADH19134.1| hypothetical protein G11222_02655 [Chlamydia trachomatis G/11222]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-G22-01-000415 	gi|296436950|gb|ADH19120.1| transcription termination factor Rho [Chlamydia trachomatis G/11222]: E-rich region from 2 to 44 corrected with score 41
>CTRA-G22-01-000422 	gi|296436943|gb|ADH19113.1| hypothetical protein G11222_02550 [Chlamydia trachomatis G/11222]: L-rich region from 20 to 81 corrected with score 50
>CTRA-G22-01-000454 	gi|296436911|gb|ADH19081.1| hypothetical protein G11222_02385 [Chlamydia trachomatis G/11222]: S-rich region from 2 to 724 corrected with score 324
>CTRA-G22-01-000454 	gi|296436911|gb|ADH19081.1| hypothetical protein G11222_02385 [Chlamydia trachomatis G/11222]: T-rich region from 11 to 116 corrected with score 85
>CTRA-G22-01-000454 	gi|296436911|gb|ADH19081.1| hypothetical protein G11222_02385 [Chlamydia trachomatis G/11222]: T-rich region from 537 to 582 corrected with score 55
>CTRA-G22-01-000471 	gi|296436894|gb|ADH19064.1| hypothetical protein G11222_02300 [Chlamydia trachomatis G/11222]: V-rich region from 41 to 87 corrected with score 40
>CTRA-G22-01-000475 	gi|296436890|gb|ADH19060.1| 30S ribosomal protein S12 [Chlamydia trachomatis G/11222]: K-rich region from 9 to 51 corrected with score 42
>CTRA-G22-01-000499 	gi|296436866|gb|ADH19036.1| GTPase ObgE [Chlamydia trachomatis G/11222]: G-rich region from 31 to 43 corrected with score 43
>CTRA-G22-01-000500 	gi|296436865|gb|ADH19035.1| metal transporter, membrane permease component [Chlamydia trachomatis G/11222]: L-rich region from 186 to 273 corrected with score 56
>CTRA-G22-01-000503 	gi|296436862|gb|ADH19032.1| putative outer membrane protein C [Chlamydia trachomatis G/11222]: S-rich region from 5 to 1353 corrected with score 517
>CTRA-G22-01-000503 	gi|296436862|gb|ADH19032.1| putative outer membrane protein C [Chlamydia trachomatis G/11222]: E-rich region from 611 to 719 corrected with score 61
>CTRA-G22-01-000503 	gi|296436862|gb|ADH19032.1| putative outer membrane protein C [Chlamydia trachomatis G/11222]: T-rich region from 1326 to 1350 corrected with score 53
>CTRA-G22-01-000503 	gi|296436862|gb|ADH19032.1| putative outer membrane protein C [Chlamydia trachomatis G/11222]: N-rich region from 635 to 706 corrected with score 43
>CTRA-G22-01-000504 	gi|296436861|gb|ADH19031.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: S-rich region from 31 to 1335 corrected with score 503
>CTRA-G22-01-000504 	gi|296436861|gb|ADH19031.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: A-rich region from 800 to 840 corrected with score 51
>CTRA-G22-01-000504 	gi|296436861|gb|ADH19031.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11222]: T-rich region from 35 to 99 corrected with score 47
>CTRA-G22-01-000520 	gi|296436845|gb|ADH19015.1| hypothetical protein G11222_02055 [Chlamydia trachomatis G/11222]: E-rich region from 25 to 174 corrected with score 66
>CTRA-G22-01-000521 	gi|296436844|gb|ADH19014.1| exoribonuclease II [Chlamydia trachomatis G/11222]: K-rich region from 653 to 694 corrected with score 80
>CTRA-G22-01-000522 	gi|296436843|gb|ADH19013.1| molecular chaperone DnaK [Chlamydia trachomatis G/11222]: S-rich region from 575 to 647 corrected with score 56
>CTRA-G22-01-000522 	gi|296436843|gb|ADH19013.1| molecular chaperone DnaK [Chlamydia trachomatis G/11222]: E-rich region from 493 to 577 corrected with score 52
>CTRA-G22-01-000523 	gi|296436842|gb|ADH19012.1| HSP-70 cofactor [Chlamydia trachomatis G/11222]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-G22-01-000526 	gi|296436839|gb|ADH19009.1| hypothetical protein G11222_02025 [Chlamydia trachomatis G/11222]: S-rich region from 2 to 133 corrected with score 45
>CTRA-G22-01-000540 	gi|296436825|gb|ADH18995.1| GTP binding protein [Chlamydia trachomatis G/11222]: R-rich region from 193 to 225 corrected with score 42
>CTRA-G22-01-000546 	gi|296436819|gb|ADH18989.1| hypothetical protein G11222_01925 [Chlamydia trachomatis G/11222]: H-rich region from 5 to 20 corrected with score 46
>CTRA-G22-01-000558 	gi|296436807|gb|ADH18977.1| hypothetical protein G11222_01865 [Chlamydia trachomatis G/11222]: E-rich region from 41 to 208 corrected with score 64
>CTRA-G22-01-000568 	gi|296436797|gb|ADH18967.1| preprotein translocase subunit SecG [Chlamydia trachomatis G/11222]: L-rich region from 1 to 25 corrected with score 41
>CTRA-G22-01-000579 	gi|296436786|gb|ADH18956.1| chaperone protein DnaJ [Chlamydia trachomatis G/11222]: G-rich region from 67 to 134 corrected with score 74
>CTRA-G22-01-000587 	gi|296436778|gb|ADH18948.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis G/11222]: S-rich region from 375 to 443 corrected with score 43
>CTRA-G22-01-000588 	gi|296436777|gb|ADH18947.1| excinuclease ABC subunit A [Chlamydia trachomatis G/11222]: P-rich region from 918 to 934 corrected with score 40
>CTRA-G22-01-000597 	gi|296436768|gb|ADH18938.1| hypothetical protein G11222_01670 [Chlamydia trachomatis G/11222]: S-rich region from 6 to 55 corrected with score 41
>CTRA-G22-01-000598 	gi|296436767|gb|ADH18937.1| hypothetical protein G11222_01665 [Chlamydia trachomatis G/11222]: T-rich region from 469 to 522 corrected with score 55
>CTRA-G22-01-000598 	gi|296436767|gb|ADH18937.1| hypothetical protein G11222_01665 [Chlamydia trachomatis G/11222]: D-rich region from 20 to 29 corrected with score 40
>CTRA-G22-01-000614 	gi|296436751|gb|ADH18921.1| V-type ATP synthase subunit E [Chlamydia trachomatis G/11222]: E-rich region from 18 to 70 corrected with score 40
>CTRA-G22-01-000634 	gi|296436731|gb|ADH18901.1| hypothetical protein G11222_01485 [Chlamydia trachomatis G/11222]: K-rich region from 71 to 293 corrected with score 86
>CTRA-G22-01-000634 	gi|296436731|gb|ADH18901.1| hypothetical protein G11222_01485 [Chlamydia trachomatis G/11222]: A-rich region from 177 to 301 corrected with score 43
>CTRA-G22-01-000635 	gi|296436730|gb|ADH18900.1| hypothetical protein G11222_01480 [Chlamydia trachomatis G/11222]: A-rich region from 32 to 93 corrected with score 55
>CTRA-G22-01-000638 	gi|296436727|gb|ADH18897.1| ClpC protease ATPase [Chlamydia trachomatis G/11222]: E-rich region from 443 to 500 corrected with score 57
>CTRA-G22-01-000638 	gi|296436727|gb|ADH18897.1| ClpC protease ATPase [Chlamydia trachomatis G/11222]: S-rich region from 153 to 171 corrected with score 44
>CTRA-G22-01-000648 	gi|296436717|gb|ADH18887.1| hypothetical protein G11222_01415 [Chlamydia trachomatis G/11222]: E-rich region from 32 to 82 corrected with score 40
>CTRA-G22-01-000695 	gi|296436670|gb|ADH18840.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis G/11222]: L-rich region from 16 to 105 corrected with score 41
>CTRA-G22-01-000696 	gi|296436669|gb|ADH18839.1| hypothetical protein G11222_01175 [Chlamydia trachomatis G/11222]: A-rich region from 8 to 74 corrected with score 44
>CTRA-G22-01-000697 	gi|296436668|gb|ADH18838.1| hypothetical protein G11222_01170 [Chlamydia trachomatis G/11222]: V-rich region from 37 to 76 corrected with score 40
>CTRA-G22-01-000702 	gi|296436663|gb|ADH18833.1| hypothetical protein G11222_01145 [Chlamydia trachomatis G/11222]: D-rich region from 248 to 262 corrected with score 41
>CTRA-G22-01-000707 	gi|296436658|gb|ADH18828.1| prenyltransferase [Chlamydia trachomatis G/11222]: L-rich region from 90 to 162 corrected with score 44
>CTRA-G22-01-000712 	gi|296436653|gb|ADH18823.1| hypothetical protein G11222_01095 [Chlamydia trachomatis G/11222]: V-rich region from 37 to 98 corrected with score 43
>CTRA-G22-01-000762 	gi|296436603|gb|ADH18773.1| hypothetical protein G11222_00845 [Chlamydia trachomatis G/11222]: K-rich region from 29 to 142 corrected with score 57
>CTRA-G22-01-000770 	gi|296436595|gb|ADH18765.1| phospholipase D endonuclease superfamily protein [Chlamydia trachomatis G/11222]: S-rich region from 2 to 95 corrected with score 56
>CTRA-G22-01-000773 	gi|296436592|gb|ADH18762.1| MAC/perforin family protein [Chlamydia trachomatis G/11222]: S-rich region from 383 to 549 corrected with score 92
>CTRA-G22-01-000779 	gi|296436586|gb|ADH18756.1| hypothetical protein G11222_00760 [Chlamydia trachomatis G/11222]: Q-rich region from 961 to 1155 corrected with score 43
>CTRA-G22-01-000782 	gi|296436583|gb|ADH18753.1| hypothetical protein G11222_00745 [Chlamydia trachomatis G/11222]: T-rich region from 2 to 62 corrected with score 46
>CTRA-G22-01-000800 	gi|296436565|gb|ADH18735.1| 30S ribosomal protein S9 [Chlamydia trachomatis G/11222]: K-rich region from 88 to 129 corrected with score 49
>CTRA-G22-01-000808 	gi|296436557|gb|ADH18727.1| inclusion membrane protein G [Chlamydia trachomatis G/11222]: S-rich region from 89 to 166 corrected with score 53
>CTRA-G22-01-000809 	gi|296436556|gb|ADH18726.1| inclusion membrane protein F [Chlamydia trachomatis G/11222]: A-rich region from 25 to 88 corrected with score 41
>CTRA-G22-01-000813 	gi|296436552|gb|ADH18722.1| chaperone-protease ClpB [Chlamydia trachomatis G/11222]: E-rich region from 412 to 534 corrected with score 58
>CTRA-G22-01-000821 	gi|296436544|gb|ADH18714.1| hypothetical protein G11222_00550 [Chlamydia trachomatis G/11222]: S-rich region from 2 to 229 corrected with score 103
>CTRA-G22-01-000821 	gi|296436544|gb|ADH18714.1| hypothetical protein G11222_00550 [Chlamydia trachomatis G/11222]: C-rich region from 308 to 350 corrected with score 47
>CTRA-G22-01-000829 	gi|296436536|gb|ADH18706.1| translation initiation factor IF-2 [Chlamydia trachomatis G/11222]: S-rich region from 33 to 286 corrected with score 104
>CTRA-G22-01-000829 	gi|296436536|gb|ADH18706.1| translation initiation factor IF-2 [Chlamydia trachomatis G/11222]: K-rich region from 2 to 57 corrected with score 43
>CTRA-G22-01-000829 	gi|296436536|gb|ADH18706.1| translation initiation factor IF-2 [Chlamydia trachomatis G/11222]: E-rich region from 123 to 156 corrected with score 40
>CTRA-G22-01-000835 	gi|296436530|gb|ADH18700.1| low calcium response protein D (predicted to be part of the TTSS apparatus) [Chlamydia trachomatis G/11222]: L-rich region from 27 to 91 corrected with score 51
>CTRA-G22-01-000836 	gi|296436529|gb|ADH18699.1| low calcium response E [Chlamydia trachomatis G/11222]: P-rich region from 385 to 421 corrected with score 55
>CTRA-G22-01-000836 	gi|296436529|gb|ADH18699.1| low calcium response E [Chlamydia trachomatis G/11222]: S-rich region from 2 to 233 corrected with score 48
>CTRA-G22-01-000842 	gi|296436523|gb|ADH18693.1| hypothetical protein G11222_00425 [Chlamydia trachomatis G/11222]: S-rich region from 2 to 387 corrected with score 88
>CTRA-G22-01-000842 	gi|296436523|gb|ADH18693.1| hypothetical protein G11222_00425 [Chlamydia trachomatis G/11222]: D-rich region from 526 to 560 corrected with score 43
>CTRA-G22-01-000843 	gi|296436522|gb|ADH18692.1| late transcription unit B protein [Chlamydia trachomatis G/11222]: K-rich region from 2 to 53 corrected with score 40
>CTRA-G22-01-000859 	gi|296436506|gb|ADH18676.1| ADP,ATP carrier protein [Chlamydia trachomatis G/11222]: A-rich region from 435 to 523 corrected with score 50
>CTRA-G22-01-000866 	gi|296436499|gb|ADH18669.1| hypothetical protein G11222_00305 [Chlamydia trachomatis G/11222]: P-rich region from 78 to 119 corrected with score 66
>CTRA-G22-01-000871 	gi|296436494|gb|ADH18664.1| hypothetical protein G11222_00280 [Chlamydia trachomatis G/11222]: E-rich region from 27 to 127 corrected with score 51
>CTRA-G22-01-000875 	gi|296436490|gb|ADH18660.1| hypothetical protein G11222_00260 [Chlamydia trachomatis G/11222]: S-rich region from 282 to 484 corrected with score 88
>CTRA-G22-01-000878 	gi|296436487|gb|ADH18657.1| histone-like protein 2 [Chlamydia trachomatis G/11222]: K-rich region from 5 to 156 corrected with score 133
>CTRA-G22-01-000878 	gi|296436487|gb|ADH18657.1| histone-like protein 2 [Chlamydia trachomatis G/11222]: A-rich region from 12 to 176 corrected with score 112
>CTRA-G22-01-000921 	gi|296436444|gb|ADH18614.1| hypothetical protein G11222_00030 [Chlamydia trachomatis G/11222]: S-rich region from 232 to 361 corrected with score 138
>CTRA-G22-01-000926 	gi|296436439|gb|ADH18609.1| hypothetical protein G11222_00005 [Chlamydia trachomatis G/11222]: S-rich region from 7 to 141 corrected with score 69
>CTRA-G74-01-000001 	gi|296438292|gb|ADH20453.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11074]: S-rich region from 107 to 780 corrected with score 115
>CTRA-G74-01-000003 	gi|296438290|gb|ADH20451.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11074]: S-rich region from 56 to 656 corrected with score 142
>CTRA-G74-01-000003 	gi|296438290|gb|ADH20451.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11074]: P-rich region from 153 to 166 corrected with score 41
>CTRA-G74-01-000004 	gi|296438289|gb|ADH20450.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11074]: S-rich region from 105 to 615 corrected with score 68
>CTRA-G74-01-000005 	gi|296438288|gb|ADH20449.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11074]: S-rich region from 560 to 828 corrected with score 77
>CTRA-G74-01-000005 	gi|296438288|gb|ADH20449.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11074]: T-rich region from 647 to 721 corrected with score 46
>CTRA-G74-01-000005 	gi|296438288|gb|ADH20449.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11074]: S-rich region from 51 to 328 corrected with score 40
>CTRA-G74-01-000007 	gi|296438286|gb|ADH20447.1| hypothetical protein G11074_04620 [Chlamydia trachomatis G/11074]: P-rich region from 74 to 141 corrected with score 147
>CTRA-G74-01-000012 	gi|296438281|gb|ADH20442.1| hypothetical protein G11074_04595 [Chlamydia trachomatis G/11074]: Y-rich region from 52 to 64 corrected with score 41
>CTRA-G74-01-000012 	gi|296438281|gb|ADH20442.1| hypothetical protein G11074_04595 [Chlamydia trachomatis G/11074]: K-rich region from 78 to 101 corrected with score 40
>CTRA-G74-01-000013 	gi|296438280|gb|ADH20441.1| hypothetical protein G11074_04590 [Chlamydia trachomatis G/11074]: S-rich region from 8 to 335 corrected with score 119
>CTRA-G74-01-000013 	gi|296438280|gb|ADH20441.1| hypothetical protein G11074_04590 [Chlamydia trachomatis G/11074]: E-rich region from 235 to 283 corrected with score 51
>CTRA-G74-01-000016 	gi|296438277|gb|ADH20438.1| hypothetical protein G11074_04575 [Chlamydia trachomatis G/11074]: S-rich region from 12 to 280 corrected with score 93
>CTRA-G74-01-000016 	gi|296438277|gb|ADH20438.1| hypothetical protein G11074_04575 [Chlamydia trachomatis G/11074]: E-rich region from 227 to 267 corrected with score 46
>CTRA-G74-01-000026 	gi|296438267|gb|ADH20428.1| hypothetical protein G11074_04525 [Chlamydia trachomatis G/11074]: E-rich region from 141 to 310 corrected with score 46
>CTRA-G74-01-000028 	gi|296438265|gb|ADH20426.1| hypothetical protein G11074_04515 [Chlamydia trachomatis G/11074]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-G74-01-000044 	gi|296438249|gb|ADH20410.1| 50S ribosomal protein L35 [Chlamydia trachomatis G/11074]: K-rich region from 3 to 47 corrected with score 40
>CTRA-G74-01-000055 	gi|296438238|gb|ADH20399.1| metalloprotease-insulinase [Chlamydia trachomatis G/11074]: E-rich region from 468 to 508 corrected with score 42
>CTRA-G74-01-000060 	gi|296438233|gb|ADH20394.1| putative membrane transport protein [Chlamydia trachomatis G/11074]: L-rich region from 141 to 186 corrected with score 50
>CTRA-G74-01-000068 	gi|296438225|gb|ADH20386.1| candidate inclusion membrane protein [Chlamydia trachomatis G/11074]: E-rich region from 148 to 254 corrected with score 85
>CTRA-G74-01-000070 	gi|296438223|gb|ADH20384.1| polymorphic outer membrane protein [Chlamydia trachomatis G/11074]: S-rich region from 121 to 671 corrected with score 60
>CTRA-G74-01-000090 	gi|296438203|gb|ADH20364.1| hypothetical protein G11074_04200 [Chlamydia trachomatis G/11074]: A-rich region from 17 to 68 corrected with score 46
>CTRA-G74-01-000098 	gi|296438195|gb|ADH20356.1| 30S ribosomal protein S14 [Chlamydia trachomatis G/11074]: K-rich region from 3 to 53 corrected with score 40
>CTRA-G74-01-000106 	gi|296438187|gb|ADH20348.1| hypothetical protein G11074_04120 [Chlamydia trachomatis G/11074]: P-rich region from 43 to 78 corrected with score 45
>CTRA-G74-01-000117 	gi|296438176|gb|ADH20337.1| hypothetical protein G11074_04065 [Chlamydia trachomatis G/11074]: E-rich region from 313 to 451 corrected with score 41
>CTRA-G74-01-000136 	gi|296438157|gb|ADH20318.1| transketolase [Chlamydia trachomatis G/11074]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-G74-01-000137 	gi|296438156|gb|ADH20317.1| hypothetical protein G11074_03965 [Chlamydia trachomatis G/11074]: F-rich region from 35 to 65 corrected with score 44
>CTRA-G74-01-000144 	gi|296438149|gb|ADH20310.1| histone H1--like developmental protein [Chlamydia trachomatis G/11074]: K-rich region from 4 to 125 corrected with score 110
>CTRA-G74-01-000144 	gi|296438149|gb|ADH20310.1| histone H1--like developmental protein [Chlamydia trachomatis G/11074]: A-rich region from 64 to 117 corrected with score 42
>CTRA-G74-01-000177 	gi|296438116|gb|ADH20277.1| hypothetical protein G11074_03760 [Chlamydia trachomatis G/11074]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-G74-01-000180 	gi|296438113|gb|ADH20274.1| SWF/SNF family helicase [Chlamydia trachomatis G/11074]: E-rich region from 103 to 140 corrected with score 41
>CTRA-G74-01-000182 	gi|296438111|gb|ADH20272.1| trigger factor [Chlamydia trachomatis G/11074]: E-rich region from 255 to 361 corrected with score 46
>CTRA-G74-01-000186 	gi|296438107|gb|ADH20268.1| GTP-binding protein EngA [Chlamydia trachomatis G/11074]: E-rich region from 169 to 212 corrected with score 40
>CTRA-G74-01-000194 	gi|296438099|gb|ADH20260.1| hypothetical protein G11074_03675 [Chlamydia trachomatis G/11074]: S-rich region from 2 to 77 corrected with score 41
>CTRA-G74-01-000218 	gi|296438075|gb|ADH20236.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/11074]: Q-rich region from 127 to 245 corrected with score 66
>CTRA-G74-01-000221 	gi|296438072|gb|ADH20233.1| hypothetical protein G11074_03540 [Chlamydia trachomatis G/11074]: E-rich region from 16 to 89 corrected with score 44
>CTRA-G74-01-000221 	gi|296438072|gb|ADH20233.1| hypothetical protein G11074_03540 [Chlamydia trachomatis G/11074]: E-rich region from 252 to 280 corrected with score 42
>CTRA-G74-01-000222 	gi|296438071|gb|ADH20232.1| hypothetical protein G11074_03535 [Chlamydia trachomatis G/11074]: E-rich region from 13 to 168 corrected with score 111
>CTRA-G74-01-000228 	gi|296438065|gb|ADH20226.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis G/11074]: E-rich region from 100 to 342 corrected with score 165
>CTRA-G74-01-000228 	gi|296438065|gb|ADH20226.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis G/11074]: S-rich region from 109 to 333 corrected with score 108
>CTRA-G74-01-000232 	gi|296438061|gb|ADH20222.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/11074]: K-rich region from 307 to 384 corrected with score 55
>CTRA-G74-01-000252 	gi|296438041|gb|ADH20202.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis G/11074]: K-rich region from 744 to 781 corrected with score 50
>CTRA-G74-01-000252 	gi|296438041|gb|ADH20202.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis G/11074]: E-rich region from 437 to 474 corrected with score 49
>CTRA-G74-01-000253 	gi|296438040|gb|ADH20201.1| hypothetical protein G11074_03375 [Chlamydia trachomatis G/11074]: F-rich region from 169 to 204 corrected with score 48
>CTRA-G74-01-000260 	gi|296438033|gb|ADH20194.1| hypothetical protein G11074_03340 [Chlamydia trachomatis G/11074]: K-rich region from 101 to 140 corrected with score 44
>CTRA-G74-01-000275 	gi|296438018|gb|ADH20179.1| CHLPN 76 kDa-like protein [Chlamydia trachomatis G/11074]: S-rich region from 2 to 601 corrected with score 181
>CTRA-G74-01-000276 	gi|296438017|gb|ADH20178.1| hypothetical protein G11074_03260 [Chlamydia trachomatis G/11074]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-G74-01-000279 	gi|296438014|gb|ADH20175.1| hypothetical protein G11074_03245 [Chlamydia trachomatis G/11074]: S-rich region from 8 to 83 corrected with score 42
>CTRA-G74-01-000280 	gi|296438013|gb|ADH20174.1| 30S ribosomal protein S20 [Chlamydia trachomatis G/11074]: K-rich region from 4 to 45 corrected with score 47
>CTRA-G74-01-000281 	gi|296438012|gb|ADH20173.1| putative integral membrane protein [Chlamydia trachomatis G/11074]: Q-rich region from 85 to 225 corrected with score 65
>CTRA-G74-01-000297 	gi|296437996|gb|ADH20157.1| invasin repeat-containing phosphatase [Chlamydia trachomatis G/11074]: Q-rich region from 52 to 131 corrected with score 50
>CTRA-G74-01-000300 	gi|296437993|gb|ADH20154.1| histone H1-I [Chlamydia trachomatis G/11074]: P-rich region from 47 to 101 corrected with score 60
>CTRA-G74-01-000300 	gi|296437993|gb|ADH20154.1| histone H1-I [Chlamydia trachomatis G/11074]: K-rich region from 30 to 115 corrected with score 42
>CTRA-G74-01-000320 	gi|296437973|gb|ADH20134.1| hypothetical protein G11074_03040 [Chlamydia trachomatis G/11074]: S-rich region from 20 to 436 corrected with score 197
>CTRA-G74-01-000320 	gi|296437973|gb|ADH20134.1| hypothetical protein G11074_03040 [Chlamydia trachomatis G/11074]: A-rich region from 231 to 313 corrected with score 54
>CTRA-G74-01-000320 	gi|296437973|gb|ADH20134.1| hypothetical protein G11074_03040 [Chlamydia trachomatis G/11074]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-G74-01-000321 	gi|296437972|gb|ADH20133.1| putative type III secretion system membrane protein [Chlamydia trachomatis G/11074]: S-rich region from 2 to 308 corrected with score 124
>CTRA-G74-01-000321 	gi|296437972|gb|ADH20133.1| putative type III secretion system membrane protein [Chlamydia trachomatis G/11074]: A-rich region from 278 to 487 corrected with score 94
>CTRA-G74-01-000323 	gi|296437970|gb|ADH20131.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis G/11074]: K-rich region from 177 to 232 corrected with score 58
>CTRA-G74-01-000327 	gi|296437966|gb|ADH20127.1| general secretion pathway protein D [Chlamydia trachomatis G/11074]: S-rich region from 388 to 444 corrected with score 48
>CTRA-G74-01-000335 	gi|296437958|gb|ADH20119.1| type III secretion system, membrane protein [Chlamydia trachomatis G/11074]: M-rich region from 164 to 256 corrected with score 47
>CTRA-G74-01-000337 	gi|296437956|gb|ADH20117.1| type III secretion system protein [Chlamydia trachomatis G/11074]: L-rich region from 93 to 121 corrected with score 44
>CTRA-G74-01-000337 	gi|296437956|gb|ADH20117.1| type III secretion system protein [Chlamydia trachomatis G/11074]: M-rich region from 229 to 303 corrected with score 41
>CTRA-G74-01-000340 	gi|296437953|gb|ADH20114.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/11074]: E-rich region from 287 to 325 corrected with score 42
>CTRA-G74-01-000355 	gi|296437938|gb|ADH20099.1| putative sugar phosphate permease [Chlamydia trachomatis G/11074]: E-rich region from 221 to 252 corrected with score 43
>CTRA-G74-01-000370 	gi|296437923|gb|ADH20084.1| hypothetical protein G11074_02780 [Chlamydia trachomatis G/11074]: A-rich region from 43 to 214 corrected with score 51
>CTRA-G74-01-000388 	gi|296437905|gb|ADH20066.1| 50S ribosomal protein L15 [Chlamydia trachomatis G/11074]: G-rich region from 21 to 55 corrected with score 42
>CTRA-G74-01-000391 	gi|296437902|gb|ADH20063.1| 30S ribosomal protein S11 [Chlamydia trachomatis G/11074]: A-rich region from 48 to 107 corrected with score 43
>CTRA-G74-01-000395 	gi|296437898|gb|ADH20059.1| hypothetical protein G11074_02655 [Chlamydia trachomatis G/11074]: E-rich region from 138 to 288 corrected with score 64
>CTRA-G74-01-000395 	gi|296437898|gb|ADH20059.1| hypothetical protein G11074_02655 [Chlamydia trachomatis G/11074]: K-rich region from 138 to 164 corrected with score 49
>CTRA-G74-01-000396 	gi|296437897|gb|ADH20058.1| hypothetical protein G11074_02650 [Chlamydia trachomatis G/11074]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-G74-01-000410 	gi|296437883|gb|ADH20044.1| transcription termination factor Rho [Chlamydia trachomatis G/11074]: E-rich region from 2 to 44 corrected with score 41
>CTRA-G74-01-000417 	gi|296437876|gb|ADH20037.1| hypothetical protein G11074_02545 [Chlamydia trachomatis G/11074]: L-rich region from 20 to 81 corrected with score 50
>CTRA-G74-01-000448 	gi|296437845|gb|ADH20006.1| hypothetical protein G11074_02385 [Chlamydia trachomatis G/11074]: S-rich region from 2 to 749 corrected with score 322
>CTRA-G74-01-000448 	gi|296437845|gb|ADH20006.1| hypothetical protein G11074_02385 [Chlamydia trachomatis G/11074]: T-rich region from 11 to 116 corrected with score 85
>CTRA-G74-01-000448 	gi|296437845|gb|ADH20006.1| hypothetical protein G11074_02385 [Chlamydia trachomatis G/11074]: T-rich region from 440 to 485 corrected with score 55
>CTRA-G74-01-000465 	gi|296437828|gb|ADH19989.1| hypothetical protein G11074_02300 [Chlamydia trachomatis G/11074]: V-rich region from 41 to 87 corrected with score 40
>CTRA-G74-01-000469 	gi|296437824|gb|ADH19985.1| 30S ribosomal protein S12 [Chlamydia trachomatis G/11074]: K-rich region from 9 to 51 corrected with score 42
>CTRA-G74-01-000493 	gi|296437800|gb|ADH19961.1| GTPase ObgE [Chlamydia trachomatis G/11074]: G-rich region from 31 to 43 corrected with score 43
>CTRA-G74-01-000494 	gi|296437799|gb|ADH19960.1| metal transporter, membrane permease component [Chlamydia trachomatis G/11074]: L-rich region from 186 to 273 corrected with score 56
>CTRA-G74-01-000497 	gi|296437796|gb|ADH19957.1| putative outer membrane protein C [Chlamydia trachomatis G/11074]: S-rich region from 5 to 1353 corrected with score 522
>CTRA-G74-01-000497 	gi|296437796|gb|ADH19957.1| putative outer membrane protein C [Chlamydia trachomatis G/11074]: T-rich region from 1326 to 1350 corrected with score 53
>CTRA-G74-01-000497 	gi|296437796|gb|ADH19957.1| putative outer membrane protein C [Chlamydia trachomatis G/11074]: N-rich region from 635 to 707 corrected with score 52
>CTRA-G74-01-000498 	gi|296437795|gb|ADH19956.1| putative outer membrane protein B [Chlamydia trachomatis G/11074]: S-rich region from 31 to 1335 corrected with score 498
>CTRA-G74-01-000498 	gi|296437795|gb|ADH19956.1| putative outer membrane protein B [Chlamydia trachomatis G/11074]: A-rich region from 800 to 840 corrected with score 51
>CTRA-G74-01-000498 	gi|296437795|gb|ADH19956.1| putative outer membrane protein B [Chlamydia trachomatis G/11074]: T-rich region from 35 to 99 corrected with score 47
>CTRA-G74-01-000514 	gi|296437779|gb|ADH19940.1| hypothetical protein G11074_02055 [Chlamydia trachomatis G/11074]: E-rich region from 25 to 174 corrected with score 62
>CTRA-G74-01-000515 	gi|296437778|gb|ADH19939.1| exoribonuclease II [Chlamydia trachomatis G/11074]: K-rich region from 653 to 694 corrected with score 80
>CTRA-G74-01-000516 	gi|296437777|gb|ADH19938.1| molecular chaperone DnaK [Chlamydia trachomatis G/11074]: S-rich region from 575 to 647 corrected with score 56
>CTRA-G74-01-000516 	gi|296437777|gb|ADH19938.1| molecular chaperone DnaK [Chlamydia trachomatis G/11074]: E-rich region from 493 to 577 corrected with score 52
>CTRA-G74-01-000517 	gi|296437776|gb|ADH19937.1| HSP-70 cofactor [Chlamydia trachomatis G/11074]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-G74-01-000520 	gi|296437773|gb|ADH19934.1| hypothetical protein G11074_02025 [Chlamydia trachomatis G/11074]: S-rich region from 2 to 133 corrected with score 45
>CTRA-G74-01-000534 	gi|296437759|gb|ADH19920.1| GTP binding protein [Chlamydia trachomatis G/11074]: R-rich region from 193 to 225 corrected with score 42
>CTRA-G74-01-000540 	gi|296437753|gb|ADH19914.1| hypothetical protein G11074_01925 [Chlamydia trachomatis G/11074]: H-rich region from 5 to 20 corrected with score 46
>CTRA-G74-01-000552 	gi|296437741|gb|ADH19902.1| hypothetical protein G11074_01865 [Chlamydia trachomatis G/11074]: E-rich region from 41 to 208 corrected with score 60
>CTRA-G74-01-000562 	gi|296437731|gb|ADH19892.1| preprotein translocase subunit SecG [Chlamydia trachomatis G/11074]: L-rich region from 1 to 25 corrected with score 41
>CTRA-G74-01-000573 	gi|296437720|gb|ADH19881.1| chaperone protein DnaJ [Chlamydia trachomatis G/11074]: G-rich region from 67 to 134 corrected with score 74
>CTRA-G74-01-000581 	gi|296437712|gb|ADH19873.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis G/11074]: S-rich region from 375 to 443 corrected with score 43
>CTRA-G74-01-000582 	gi|296437711|gb|ADH19872.1| excinuclease ABC subunit A [Chlamydia trachomatis G/11074]: P-rich region from 918 to 934 corrected with score 40
>CTRA-G74-01-000591 	gi|296437702|gb|ADH19863.1| hypothetical protein G11074_01665 [Chlamydia trachomatis G/11074]: T-rich region from 516 to 569 corrected with score 55
>CTRA-G74-01-000591 	gi|296437702|gb|ADH19863.1| hypothetical protein G11074_01665 [Chlamydia trachomatis G/11074]: D-rich region from 30 to 39 corrected with score 40
>CTRA-G74-01-000601 	gi|296437692|gb|ADH19853.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis G/11074]: A-rich region from 34 to 56 corrected with score 45
>CTRA-G74-01-000607 	gi|296437686|gb|ADH19847.1| V-type ATP synthase subunit E [Chlamydia trachomatis G/11074]: E-rich region from 18 to 70 corrected with score 40
>CTRA-G74-01-000627 	gi|296437666|gb|ADH19827.1| hypothetical protein G11074_01485 [Chlamydia trachomatis G/11074]: K-rich region from 70 to 292 corrected with score 87
>CTRA-G74-01-000627 	gi|296437666|gb|ADH19827.1| hypothetical protein G11074_01485 [Chlamydia trachomatis G/11074]: A-rich region from 176 to 300 corrected with score 45
>CTRA-G74-01-000628 	gi|296437665|gb|ADH19826.1| candidate inclusion membrane protein [Chlamydia trachomatis G/11074]: A-rich region from 32 to 93 corrected with score 53
>CTRA-G74-01-000631 	gi|296437662|gb|ADH19823.1| ATP-dependent Clp protease [Chlamydia trachomatis G/11074]: E-rich region from 443 to 500 corrected with score 57
>CTRA-G74-01-000631 	gi|296437662|gb|ADH19823.1| ATP-dependent Clp protease [Chlamydia trachomatis G/11074]: S-rich region from 153 to 171 corrected with score 44
>CTRA-G74-01-000641 	gi|296437652|gb|ADH19813.1| hypothetical protein G11074_01415 [Chlamydia trachomatis G/11074]: E-rich region from 32 to 82 corrected with score 40
>CTRA-G74-01-000687 	gi|296437606|gb|ADH19767.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis G/11074]: L-rich region from 16 to 105 corrected with score 41
>CTRA-G74-01-000688 	gi|296437605|gb|ADH19766.1| hypothetical protein G11074_01180 [Chlamydia trachomatis G/11074]: A-rich region from 8 to 74 corrected with score 40
>CTRA-G74-01-000689 	gi|296437604|gb|ADH19765.1| hypothetical protein G11074_01175 [Chlamydia trachomatis G/11074]: V-rich region from 37 to 76 corrected with score 40
>CTRA-G74-01-000694 	gi|296437599|gb|ADH19760.1| hypothetical protein G11074_01150 [Chlamydia trachomatis G/11074]: D-rich region from 248 to 262 corrected with score 41
>CTRA-G74-01-000699 	gi|296437594|gb|ADH19755.1| prenyltransferase [Chlamydia trachomatis G/11074]: L-rich region from 90 to 162 corrected with score 44
>CTRA-G74-01-000704 	gi|296437589|gb|ADH19750.1| hypothetical protein G11074_01100 [Chlamydia trachomatis G/11074]: V-rich region from 37 to 98 corrected with score 43
>CTRA-G74-01-000762 	gi|296437531|gb|ADH19692.1| phospholipase D endonuclease superfamily protein [Chlamydia trachomatis G/11074]: S-rich region from 2 to 100 corrected with score 59
>CTRA-G74-01-000764 	gi|296437529|gb|ADH19690.1| MAC/perforin family protein [Chlamydia trachomatis G/11074]: S-rich region from 383 to 549 corrected with score 92
>CTRA-G74-01-000770 	gi|296437523|gb|ADH19684.1| hypothetical protein G11074_00760 [Chlamydia trachomatis G/11074]: Q-rich region from 961 to 1155 corrected with score 43
>CTRA-G74-01-000773 	gi|296437520|gb|ADH19681.1| hypothetical protein G11074_00745 [Chlamydia trachomatis G/11074]: T-rich region from 2 to 62 corrected with score 47
>CTRA-G74-01-000791 	gi|296437502|gb|ADH19663.1| 30S ribosomal protein S9 [Chlamydia trachomatis G/11074]: K-rich region from 92 to 133 corrected with score 49
>CTRA-G74-01-000799 	gi|296437494|gb|ADH19655.1| inclusion membrane protein G [Chlamydia trachomatis G/11074]: S-rich region from 89 to 166 corrected with score 53
>CTRA-G74-01-000800 	gi|296437493|gb|ADH19654.1| inclusion membrane protein F [Chlamydia trachomatis G/11074]: A-rich region from 25 to 88 corrected with score 41
>CTRA-G74-01-000804 	gi|296437489|gb|ADH19650.1| chaperone-protease ClpB [Chlamydia trachomatis G/11074]: E-rich region from 412 to 534 corrected with score 58
>CTRA-G74-01-000812 	gi|296437481|gb|ADH19642.1| hypothetical protein G11074_00545 [Chlamydia trachomatis G/11074]: S-rich region from 2 to 229 corrected with score 104
>CTRA-G74-01-000812 	gi|296437481|gb|ADH19642.1| hypothetical protein G11074_00545 [Chlamydia trachomatis G/11074]: C-rich region from 308 to 350 corrected with score 47
>CTRA-G74-01-000820 	gi|296437473|gb|ADH19634.1| translation initiation factor IF-2 [Chlamydia trachomatis G/11074]: S-rich region from 33 to 286 corrected with score 104
>CTRA-G74-01-000820 	gi|296437473|gb|ADH19634.1| translation initiation factor IF-2 [Chlamydia trachomatis G/11074]: K-rich region from 2 to 57 corrected with score 43
>CTRA-G74-01-000820 	gi|296437473|gb|ADH19634.1| translation initiation factor IF-2 [Chlamydia trachomatis G/11074]: E-rich region from 123 to 156 corrected with score 40
>CTRA-G74-01-000826 	gi|296437467|gb|ADH19628.1| low calcium response protein D (predicted to be part of the TTSS apparatus) [Chlamydia trachomatis G/11074]: L-rich region from 27 to 91 corrected with score 51
>CTRA-G74-01-000827 	gi|296437466|gb|ADH19627.1| low calcium response E [Chlamydia trachomatis G/11074]: P-rich region from 385 to 421 corrected with score 55
>CTRA-G74-01-000827 	gi|296437466|gb|ADH19627.1| low calcium response E [Chlamydia trachomatis G/11074]: E-rich region from 61 to 127 corrected with score 51
>CTRA-G74-01-000834 	gi|296437459|gb|ADH19620.1| hypothetical protein G11074_00425 [Chlamydia trachomatis G/11074]: S-rich region from 2 to 387 corrected with score 86
>CTRA-G74-01-000834 	gi|296437459|gb|ADH19620.1| hypothetical protein G11074_00425 [Chlamydia trachomatis G/11074]: D-rich region from 526 to 560 corrected with score 43
>CTRA-G74-01-000835 	gi|296437458|gb|ADH19619.1| late transcription unit B protein [Chlamydia trachomatis G/11074]: K-rich region from 2 to 53 corrected with score 40
>CTRA-G74-01-000851 	gi|296437442|gb|ADH19603.1| ADP,ATP carrier protein [Chlamydia trachomatis G/11074]: A-rich region from 435 to 523 corrected with score 50
>CTRA-G74-01-000858 	gi|296437435|gb|ADH19596.1| hypothetical protein G11074_00305 [Chlamydia trachomatis G/11074]: P-rich region from 78 to 119 corrected with score 66
>CTRA-G74-01-000863 	gi|296437430|gb|ADH19591.1| hypothetical protein G11074_00280 [Chlamydia trachomatis G/11074]: E-rich region from 27 to 127 corrected with score 54
>CTRA-G74-01-000867 	gi|296437426|gb|ADH19587.1| hypothetical protein G11074_00260 [Chlamydia trachomatis G/11074]: S-rich region from 271 to 473 corrected with score 88
>CTRA-G74-01-000870 	gi|296437423|gb|ADH19584.1| histone-like protein 2 [Chlamydia trachomatis G/11074]: K-rich region from 5 to 140 corrected with score 122
>CTRA-G74-01-000870 	gi|296437423|gb|ADH19584.1| histone-like protein 2 [Chlamydia trachomatis G/11074]: A-rich region from 12 to 160 corrected with score 103
>CTRA-G74-01-000913 	gi|296437380|gb|ADH19541.1| hypothetical protein G11074_00030 [Chlamydia trachomatis G/11074]: S-rich region from 232 to 361 corrected with score 138
>CTRA-G74-01-000918 	gi|296437375|gb|ADH19536.1| hypothetical protein G11074_00005 [Chlamydia trachomatis G/11074]: S-rich region from 2 to 141 corrected with score 74
>CTRA-G93-01-000001 	gi|297140793|gb|ADH97551.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9301]: S-rich region from 107 to 780 corrected with score 115
>CTRA-G93-01-000003 	gi|297140791|gb|ADH97549.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9301]: S-rich region from 56 to 656 corrected with score 142
>CTRA-G93-01-000003 	gi|297140791|gb|ADH97549.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9301]: P-rich region from 153 to 166 corrected with score 41
>CTRA-G93-01-000004 	gi|297140790|gb|ADH97548.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9301]: S-rich region from 105 to 615 corrected with score 68
>CTRA-G93-01-000005 	gi|297140789|gb|ADH97547.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9301]: S-rich region from 560 to 828 corrected with score 77
>CTRA-G93-01-000005 	gi|297140789|gb|ADH97547.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9301]: T-rich region from 647 to 721 corrected with score 46
>CTRA-G93-01-000005 	gi|297140789|gb|ADH97547.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9301]: S-rich region from 51 to 328 corrected with score 40
>CTRA-G93-01-000007 	gi|297140787|gb|ADH97545.1| hypothetical protein CTG9301_04635 [Chlamydia trachomatis G/9301]: P-rich region from 74 to 141 corrected with score 147
>CTRA-G93-01-000012 	gi|297140782|gb|ADH97540.1| hypothetical protein CTG9301_04610 [Chlamydia trachomatis G/9301]: Y-rich region from 52 to 64 corrected with score 41
>CTRA-G93-01-000012 	gi|297140782|gb|ADH97540.1| hypothetical protein CTG9301_04610 [Chlamydia trachomatis G/9301]: K-rich region from 78 to 101 corrected with score 40
>CTRA-G93-01-000013 	gi|297140781|gb|ADH97539.1| hypothetical protein CTG9301_04605 [Chlamydia trachomatis G/9301]: S-rich region from 8 to 335 corrected with score 119
>CTRA-G93-01-000013 	gi|297140781|gb|ADH97539.1| hypothetical protein CTG9301_04605 [Chlamydia trachomatis G/9301]: E-rich region from 235 to 283 corrected with score 51
>CTRA-G93-01-000015 	gi|297140779|gb|ADH97537.1| hypothetical protein CTG9301_04595 [Chlamydia trachomatis G/9301]: S-rich region from 2 to 233 corrected with score 99
>CTRA-G93-01-000016 	gi|297140778|gb|ADH97536.1| hypothetical protein CTG9301_04590 [Chlamydia trachomatis G/9301]: S-rich region from 12 to 280 corrected with score 93
>CTRA-G93-01-000016 	gi|297140778|gb|ADH97536.1| hypothetical protein CTG9301_04590 [Chlamydia trachomatis G/9301]: E-rich region from 227 to 267 corrected with score 46
>CTRA-G93-01-000026 	gi|297140768|gb|ADH97526.1| hypothetical protein CTG9301_04540 [Chlamydia trachomatis G/9301]: E-rich region from 141 to 310 corrected with score 46
>CTRA-G93-01-000028 	gi|297140766|gb|ADH97524.1| hypothetical protein CTG9301_04530 [Chlamydia trachomatis G/9301]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-G93-01-000044 	gi|297140750|gb|ADH97508.1| 50S ribosomal protein L35 [Chlamydia trachomatis G/9301]: K-rich region from 3 to 47 corrected with score 40
>CTRA-G93-01-000055 	gi|297140739|gb|ADH97497.1| metalloprotease-insulinase [Chlamydia trachomatis G/9301]: E-rich region from 468 to 508 corrected with score 42
>CTRA-G93-01-000060 	gi|297140734|gb|ADH97492.1| putative membrane transport protein [Chlamydia trachomatis G/9301]: L-rich region from 141 to 186 corrected with score 50
>CTRA-G93-01-000068 	gi|297140726|gb|ADH97484.1| candidate inclusion membrane protein [Chlamydia trachomatis G/9301]: E-rich region from 148 to 254 corrected with score 85
>CTRA-G93-01-000070 	gi|297140724|gb|ADH97482.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9301]: S-rich region from 121 to 671 corrected with score 60
>CTRA-G93-01-000090 	gi|297140704|gb|ADH97462.1| hypothetical protein CTG9301_04215 [Chlamydia trachomatis G/9301]: A-rich region from 17 to 68 corrected with score 46
>CTRA-G93-01-000098 	gi|297140696|gb|ADH97454.1| 30S ribosomal protein S14 [Chlamydia trachomatis G/9301]: K-rich region from 3 to 53 corrected with score 40
>CTRA-G93-01-000106 	gi|297140688|gb|ADH97446.1| hypothetical protein CTG9301_04135 [Chlamydia trachomatis G/9301]: P-rich region from 43 to 78 corrected with score 45
>CTRA-G93-01-000117 	gi|297140677|gb|ADH97435.1| hypothetical protein CTG9301_04080 [Chlamydia trachomatis G/9301]: E-rich region from 313 to 451 corrected with score 41
>CTRA-G93-01-000136 	gi|297140658|gb|ADH97416.1| transketolase [Chlamydia trachomatis G/9301]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-G93-01-000137 	gi|297140657|gb|ADH97415.1| hypothetical protein CTG9301_03980 [Chlamydia trachomatis G/9301]: F-rich region from 35 to 65 corrected with score 44
>CTRA-G93-01-000144 	gi|297140650|gb|ADH97408.1| histone H1--like developmental protein [Chlamydia trachomatis G/9301]: K-rich region from 4 to 125 corrected with score 110
>CTRA-G93-01-000144 	gi|297140650|gb|ADH97408.1| histone H1--like developmental protein [Chlamydia trachomatis G/9301]: A-rich region from 64 to 117 corrected with score 42
>CTRA-G93-01-000177 	gi|297140617|gb|ADH97375.1| hypothetical protein CTG9301_03775 [Chlamydia trachomatis G/9301]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-G93-01-000180 	gi|297140614|gb|ADH97372.1| SWF/SNF family helicase [Chlamydia trachomatis G/9301]: E-rich region from 103 to 140 corrected with score 41
>CTRA-G93-01-000182 	gi|297140612|gb|ADH97370.1| trigger factor [Chlamydia trachomatis G/9301]: E-rich region from 255 to 361 corrected with score 46
>CTRA-G93-01-000186 	gi|297140608|gb|ADH97366.1| GTP-binding protein EngA [Chlamydia trachomatis G/9301]: E-rich region from 169 to 212 corrected with score 40
>CTRA-G93-01-000194 	gi|297140600|gb|ADH97358.1| hypothetical protein CTG9301_03690 [Chlamydia trachomatis G/9301]: S-rich region from 2 to 77 corrected with score 41
>CTRA-G93-01-000218 	gi|297140576|gb|ADH97334.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/9301]: Q-rich region from 127 to 245 corrected with score 66
>CTRA-G93-01-000221 	gi|297140573|gb|ADH97331.1| hypothetical protein CTG9301_03550 [Chlamydia trachomatis G/9301]: E-rich region from 16 to 89 corrected with score 44
>CTRA-G93-01-000221 	gi|297140573|gb|ADH97331.1| hypothetical protein CTG9301_03550 [Chlamydia trachomatis G/9301]: E-rich region from 252 to 280 corrected with score 42
>CTRA-G93-01-000222 	gi|297140572|gb|ADH97330.1| hypothetical protein CTG9301_03545 [Chlamydia trachomatis G/9301]: E-rich region from 13 to 168 corrected with score 111
>CTRA-G93-01-000228 	gi|297140566|gb|ADH97324.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis G/9301]: E-rich region from 100 to 342 corrected with score 165
>CTRA-G93-01-000228 	gi|297140566|gb|ADH97324.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis G/9301]: S-rich region from 109 to 333 corrected with score 108
>CTRA-G93-01-000231 	gi|297140563|gb|ADH97321.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/9301]: K-rich region from 307 to 384 corrected with score 55
>CTRA-G93-01-000251 	gi|297140543|gb|ADH97301.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis G/9301]: K-rich region from 744 to 781 corrected with score 50
>CTRA-G93-01-000251 	gi|297140543|gb|ADH97301.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis G/9301]: E-rich region from 437 to 474 corrected with score 49
>CTRA-G93-01-000252 	gi|297140542|gb|ADH97300.1| hypothetical protein CTG9301_03390 [Chlamydia trachomatis G/9301]: F-rich region from 169 to 204 corrected with score 48
>CTRA-G93-01-000259 	gi|297140535|gb|ADH97293.1| hypothetical protein CTG9301_03355 [Chlamydia trachomatis G/9301]: K-rich region from 101 to 140 corrected with score 44
>CTRA-G93-01-000274 	gi|297140520|gb|ADH97278.1| CHLPN 76 kD protein-like protein [Chlamydia trachomatis G/9301]: S-rich region from 2 to 601 corrected with score 181
>CTRA-G93-01-000275 	gi|297140519|gb|ADH97277.1| hypothetical protein CTG9301_03275 [Chlamydia trachomatis G/9301]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-G93-01-000278 	gi|297140516|gb|ADH97274.1| hypothetical protein CTG9301_03260 [Chlamydia trachomatis G/9301]: S-rich region from 8 to 83 corrected with score 42
>CTRA-G93-01-000279 	gi|297140515|gb|ADH97273.1| 30S ribosomal protein S20 [Chlamydia trachomatis G/9301]: K-rich region from 4 to 45 corrected with score 47
>CTRA-G93-01-000280 	gi|297140514|gb|ADH97272.1| putative integral membrane protein [Chlamydia trachomatis G/9301]: Q-rich region from 85 to 225 corrected with score 65
>CTRA-G93-01-000296 	gi|297140498|gb|ADH97256.1| invasin repeat-containing phosphatase [Chlamydia trachomatis G/9301]: Q-rich region from 52 to 131 corrected with score 50
>CTRA-G93-01-000299 	gi|297140495|gb|ADH97253.1| histone H1-I [Chlamydia trachomatis G/9301]: P-rich region from 47 to 101 corrected with score 60
>CTRA-G93-01-000299 	gi|297140495|gb|ADH97253.1| histone H1-I [Chlamydia trachomatis G/9301]: K-rich region from 30 to 115 corrected with score 42
>CTRA-G93-01-000320 	gi|297140474|gb|ADH97232.1| hypothetical protein CTG9301_03050 [Chlamydia trachomatis G/9301]: S-rich region from 20 to 436 corrected with score 197
>CTRA-G93-01-000320 	gi|297140474|gb|ADH97232.1| hypothetical protein CTG9301_03050 [Chlamydia trachomatis G/9301]: A-rich region from 231 to 313 corrected with score 54
>CTRA-G93-01-000320 	gi|297140474|gb|ADH97232.1| hypothetical protein CTG9301_03050 [Chlamydia trachomatis G/9301]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-G93-01-000321 	gi|297140473|gb|ADH97231.1| putative type III secretion system membrane protein [Chlamydia trachomatis G/9301]: S-rich region from 2 to 308 corrected with score 124
>CTRA-G93-01-000321 	gi|297140473|gb|ADH97231.1| putative type III secretion system membrane protein [Chlamydia trachomatis G/9301]: A-rich region from 278 to 487 corrected with score 94
>CTRA-G93-01-000323 	gi|297140471|gb|ADH97229.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis G/9301]: K-rich region from 177 to 232 corrected with score 58
>CTRA-G93-01-000327 	gi|297140467|gb|ADH97225.1| general secretion pathway protein D [Chlamydia trachomatis G/9301]: S-rich region from 388 to 444 corrected with score 48
>CTRA-G93-01-000335 	gi|297140459|gb|ADH97217.1| type III secretion system, membrane protein [Chlamydia trachomatis G/9301]: M-rich region from 164 to 256 corrected with score 47
>CTRA-G93-01-000337 	gi|297140457|gb|ADH97215.1| type III secretion system protein [Chlamydia trachomatis G/9301]: L-rich region from 93 to 121 corrected with score 44
>CTRA-G93-01-000337 	gi|297140457|gb|ADH97215.1| type III secretion system protein [Chlamydia trachomatis G/9301]: M-rich region from 229 to 303 corrected with score 41
>CTRA-G93-01-000341 	gi|297140453|gb|ADH97211.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/9301]: E-rich region from 287 to 325 corrected with score 42
>CTRA-G93-01-000356 	gi|297140438|gb|ADH97196.1| putative sugar phosphate permease [Chlamydia trachomatis G/9301]: E-rich region from 221 to 252 corrected with score 43
>CTRA-G93-01-000371 	gi|297140423|gb|ADH97181.1| hypothetical protein CTG9301_02785 [Chlamydia trachomatis G/9301]: A-rich region from 43 to 214 corrected with score 51
>CTRA-G93-01-000389 	gi|297140405|gb|ADH97163.1| 50S ribosomal protein L15 [Chlamydia trachomatis G/9301]: G-rich region from 21 to 55 corrected with score 42
>CTRA-G93-01-000392 	gi|297140402|gb|ADH97160.1| 30S ribosomal protein S11 [Chlamydia trachomatis G/9301]: A-rich region from 48 to 107 corrected with score 43
>CTRA-G93-01-000396 	gi|297140398|gb|ADH97156.1| hypothetical protein CTG9301_02660 [Chlamydia trachomatis G/9301]: E-rich region from 138 to 288 corrected with score 64
>CTRA-G93-01-000396 	gi|297140398|gb|ADH97156.1| hypothetical protein CTG9301_02660 [Chlamydia trachomatis G/9301]: K-rich region from 138 to 164 corrected with score 49
>CTRA-G93-01-000397 	gi|297140397|gb|ADH97155.1| hypothetical protein CTG9301_02655 [Chlamydia trachomatis G/9301]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-G93-01-000411 	gi|297140383|gb|ADH97141.1| transcription termination factor Rho [Chlamydia trachomatis G/9301]: E-rich region from 2 to 44 corrected with score 41
>CTRA-G93-01-000418 	gi|297140376|gb|ADH97134.1| hypothetical protein CTG9301_02550 [Chlamydia trachomatis G/9301]: L-rich region from 20 to 81 corrected with score 50
>CTRA-G93-01-000449 	gi|297140345|gb|ADH97103.1| hypothetical protein CTG9301_02390 [Chlamydia trachomatis G/9301]: S-rich region from 2 to 728 corrected with score 322
>CTRA-G93-01-000449 	gi|297140345|gb|ADH97103.1| hypothetical protein CTG9301_02390 [Chlamydia trachomatis G/9301]: T-rich region from 11 to 116 corrected with score 85
>CTRA-G93-01-000449 	gi|297140345|gb|ADH97103.1| hypothetical protein CTG9301_02390 [Chlamydia trachomatis G/9301]: T-rich region from 541 to 586 corrected with score 55
>CTRA-G93-01-000466 	gi|297140328|gb|ADH97086.1| hypothetical protein CTG9301_02305 [Chlamydia trachomatis G/9301]: V-rich region from 41 to 87 corrected with score 40
>CTRA-G93-01-000470 	gi|297140324|gb|ADH97082.1| 30S ribosomal protein S12 [Chlamydia trachomatis G/9301]: K-rich region from 9 to 51 corrected with score 42
>CTRA-G93-01-000494 	gi|297140300|gb|ADH97058.1| GTPase ObgE [Chlamydia trachomatis G/9301]: G-rich region from 31 to 43 corrected with score 43
>CTRA-G93-01-000495 	gi|297140299|gb|ADH97057.1| metal transporter, membrane permease component [Chlamydia trachomatis G/9301]: L-rich region from 186 to 273 corrected with score 56
>CTRA-G93-01-000498 	gi|297140296|gb|ADH97054.1| putative outer membrane protein C [Chlamydia trachomatis G/9301]: S-rich region from 5 to 1353 corrected with score 522
>CTRA-G93-01-000498 	gi|297140296|gb|ADH97054.1| putative outer membrane protein C [Chlamydia trachomatis G/9301]: T-rich region from 1326 to 1350 corrected with score 53
>CTRA-G93-01-000498 	gi|297140296|gb|ADH97054.1| putative outer membrane protein C [Chlamydia trachomatis G/9301]: N-rich region from 635 to 707 corrected with score 52
>CTRA-G93-01-000499 	gi|297140295|gb|ADH97053.1| putative outer membrane protein B [Chlamydia trachomatis G/9301]: S-rich region from 31 to 1335 corrected with score 498
>CTRA-G93-01-000499 	gi|297140295|gb|ADH97053.1| putative outer membrane protein B [Chlamydia trachomatis G/9301]: A-rich region from 800 to 840 corrected with score 51
>CTRA-G93-01-000499 	gi|297140295|gb|ADH97053.1| putative outer membrane protein B [Chlamydia trachomatis G/9301]: T-rich region from 35 to 99 corrected with score 47
>CTRA-G93-01-000515 	gi|297140279|gb|ADH97037.1| hypothetical protein CTG9301_02060 [Chlamydia trachomatis G/9301]: E-rich region from 25 to 174 corrected with score 62
>CTRA-G93-01-000516 	gi|297140278|gb|ADH97036.1| exoribonuclease II [Chlamydia trachomatis G/9301]: K-rich region from 653 to 694 corrected with score 80
>CTRA-G93-01-000517 	gi|297140277|gb|ADH97035.1| molecular chaperone DnaK [Chlamydia trachomatis G/9301]: S-rich region from 575 to 647 corrected with score 56
>CTRA-G93-01-000517 	gi|297140277|gb|ADH97035.1| molecular chaperone DnaK [Chlamydia trachomatis G/9301]: E-rich region from 493 to 577 corrected with score 52
>CTRA-G93-01-000518 	gi|297140276|gb|ADH97034.1| HSP-70 cofactor [Chlamydia trachomatis G/9301]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-G93-01-000521 	gi|297140273|gb|ADH97031.1| hypothetical protein CTG9301_02030 [Chlamydia trachomatis G/9301]: S-rich region from 2 to 133 corrected with score 45
>CTRA-G93-01-000535 	gi|297140259|gb|ADH97017.1| GTP binding protein [Chlamydia trachomatis G/9301]: R-rich region from 193 to 225 corrected with score 42
>CTRA-G93-01-000542 	gi|297140252|gb|ADH97010.1| hypothetical protein CTG9301_01925 [Chlamydia trachomatis G/9301]: H-rich region from 5 to 20 corrected with score 46
>CTRA-G93-01-000554 	gi|297140240|gb|ADH96998.1| hypothetical protein CTG9301_01865 [Chlamydia trachomatis G/9301]: E-rich region from 41 to 208 corrected with score 60
>CTRA-G93-01-000564 	gi|297140230|gb|ADH96988.1| preprotein translocase subunit SecG [Chlamydia trachomatis G/9301]: L-rich region from 1 to 25 corrected with score 41
>CTRA-G93-01-000575 	gi|297140219|gb|ADH96977.1| chaperone protein DnaJ [Chlamydia trachomatis G/9301]: G-rich region from 67 to 134 corrected with score 74
>CTRA-G93-01-000583 	gi|297140211|gb|ADH96969.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis G/9301]: S-rich region from 375 to 443 corrected with score 43
>CTRA-G93-01-000584 	gi|297140210|gb|ADH96968.1| excinuclease ABC subunit A [Chlamydia trachomatis G/9301]: P-rich region from 918 to 934 corrected with score 40
>CTRA-G93-01-000593 	gi|297140201|gb|ADH96959.1| hypothetical protein CTG9301_01665 [Chlamydia trachomatis G/9301]: T-rich region from 516 to 569 corrected with score 55
>CTRA-G93-01-000593 	gi|297140201|gb|ADH96959.1| hypothetical protein CTG9301_01665 [Chlamydia trachomatis G/9301]: D-rich region from 30 to 39 corrected with score 40
>CTRA-G93-01-000603 	gi|297140191|gb|ADH96949.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis G/9301]: A-rich region from 34 to 56 corrected with score 45
>CTRA-G93-01-000609 	gi|297140185|gb|ADH96943.1| V-type ATP synthase subunit E [Chlamydia trachomatis G/9301]: E-rich region from 18 to 70 corrected with score 40
>CTRA-G93-01-000629 	gi|297140165|gb|ADH96923.1| hypothetical protein CTG9301_01485 [Chlamydia trachomatis G/9301]: K-rich region from 70 to 292 corrected with score 87
>CTRA-G93-01-000629 	gi|297140165|gb|ADH96923.1| hypothetical protein CTG9301_01485 [Chlamydia trachomatis G/9301]: A-rich region from 176 to 300 corrected with score 45
>CTRA-G93-01-000630 	gi|297140164|gb|ADH96922.1| candidate inclusion membrane protein [Chlamydia trachomatis G/9301]: A-rich region from 32 to 93 corrected with score 53
>CTRA-G93-01-000633 	gi|297140161|gb|ADH96919.1| ATP-dependent Clp protease [Chlamydia trachomatis G/9301]: E-rich region from 443 to 500 corrected with score 57
>CTRA-G93-01-000633 	gi|297140161|gb|ADH96919.1| ATP-dependent Clp protease [Chlamydia trachomatis G/9301]: S-rich region from 153 to 171 corrected with score 44
>CTRA-G93-01-000643 	gi|297140151|gb|ADH96909.1| hypothetical protein CTG9301_01415 [Chlamydia trachomatis G/9301]: E-rich region from 32 to 82 corrected with score 40
>CTRA-G93-01-000689 	gi|297140105|gb|ADH96863.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis G/9301]: L-rich region from 16 to 105 corrected with score 41
>CTRA-G93-01-000690 	gi|297140104|gb|ADH96862.1| hypothetical protein CTG9301_01180 [Chlamydia trachomatis G/9301]: A-rich region from 8 to 74 corrected with score 40
>CTRA-G93-01-000691 	gi|297140103|gb|ADH96861.1| hypothetical protein CTG9301_01175 [Chlamydia trachomatis G/9301]: V-rich region from 37 to 76 corrected with score 40
>CTRA-G93-01-000696 	gi|297140098|gb|ADH96856.1| hypothetical protein CTG9301_01150 [Chlamydia trachomatis G/9301]: D-rich region from 248 to 262 corrected with score 41
>CTRA-G93-01-000701 	gi|297140093|gb|ADH96851.1| prenyltransferase [Chlamydia trachomatis G/9301]: L-rich region from 90 to 162 corrected with score 44
>CTRA-G93-01-000706 	gi|297140088|gb|ADH96846.1| hypothetical protein CTG9301_01100 [Chlamydia trachomatis G/9301]: V-rich region from 37 to 98 corrected with score 43
>CTRA-G93-01-000764 	gi|297140030|gb|ADH96788.1| phospholipase D endonuclease superfamily protein [Chlamydia trachomatis G/9301]: S-rich region from 2 to 100 corrected with score 59
>CTRA-G93-01-000766 	gi|297140028|gb|ADH96786.1| MAC/perforin family protein [Chlamydia trachomatis G/9301]: S-rich region from 383 to 549 corrected with score 92
>CTRA-G93-01-000772 	gi|297140022|gb|ADH96780.1| hypothetical protein CTG9301_00760 [Chlamydia trachomatis G/9301]: Q-rich region from 961 to 1155 corrected with score 43
>CTRA-G93-01-000775 	gi|297140019|gb|ADH96777.1| hypothetical protein CTG9301_00745 [Chlamydia trachomatis G/9301]: T-rich region from 2 to 62 corrected with score 47
>CTRA-G93-01-000793 	gi|297140001|gb|ADH96759.1| 30S ribosomal protein S9 [Chlamydia trachomatis G/9301]: K-rich region from 88 to 129 corrected with score 49
>CTRA-G93-01-000801 	gi|297139993|gb|ADH96751.1| inclusion membrane protein G [Chlamydia trachomatis G/9301]: S-rich region from 89 to 166 corrected with score 53
>CTRA-G93-01-000802 	gi|297139992|gb|ADH96750.1| inclusion membrane protein F [Chlamydia trachomatis G/9301]: A-rich region from 25 to 88 corrected with score 41
>CTRA-G93-01-000806 	gi|297139988|gb|ADH96746.1| chaperone-protease ClpB [Chlamydia trachomatis G/9301]: E-rich region from 412 to 534 corrected with score 58
>CTRA-G93-01-000814 	gi|297139980|gb|ADH96738.1| hypothetical protein CTG9301_00545 [Chlamydia trachomatis G/9301]: S-rich region from 2 to 229 corrected with score 104
>CTRA-G93-01-000814 	gi|297139980|gb|ADH96738.1| hypothetical protein CTG9301_00545 [Chlamydia trachomatis G/9301]: C-rich region from 308 to 350 corrected with score 47
>CTRA-G93-01-000822 	gi|297139972|gb|ADH96730.1| translation initiation factor IF-2 [Chlamydia trachomatis G/9301]: S-rich region from 33 to 286 corrected with score 104
>CTRA-G93-01-000822 	gi|297139972|gb|ADH96730.1| translation initiation factor IF-2 [Chlamydia trachomatis G/9301]: K-rich region from 2 to 57 corrected with score 43
>CTRA-G93-01-000822 	gi|297139972|gb|ADH96730.1| translation initiation factor IF-2 [Chlamydia trachomatis G/9301]: E-rich region from 123 to 156 corrected with score 40
>CTRA-G93-01-000828 	gi|297139966|gb|ADH96724.1| low calcium response protein D (predicted to be part of the TTSS apparatus) [Chlamydia trachomatis G/9301]: L-rich region from 27 to 91 corrected with score 51
>CTRA-G93-01-000829 	gi|297139965|gb|ADH96723.1| low calcium response E [Chlamydia trachomatis G/9301]: P-rich region from 385 to 421 corrected with score 55
>CTRA-G93-01-000829 	gi|297139965|gb|ADH96723.1| low calcium response E [Chlamydia trachomatis G/9301]: E-rich region from 61 to 127 corrected with score 51
>CTRA-G93-01-000836 	gi|297139958|gb|ADH96716.1| hypothetical protein CTG9301_00425 [Chlamydia trachomatis G/9301]: S-rich region from 2 to 387 corrected with score 86
>CTRA-G93-01-000836 	gi|297139958|gb|ADH96716.1| hypothetical protein CTG9301_00425 [Chlamydia trachomatis G/9301]: D-rich region from 526 to 560 corrected with score 43
>CTRA-G93-01-000837 	gi|297139957|gb|ADH96715.1| late transcription unit B protein [Chlamydia trachomatis G/9301]: K-rich region from 2 to 53 corrected with score 40
>CTRA-G93-01-000853 	gi|297139941|gb|ADH96699.1| ADP,ATP carrier protein [Chlamydia trachomatis G/9301]: A-rich region from 435 to 523 corrected with score 50
>CTRA-G93-01-000860 	gi|297139934|gb|ADH96692.1| hypothetical protein CTG9301_00305 [Chlamydia trachomatis G/9301]: P-rich region from 78 to 119 corrected with score 66
>CTRA-G93-01-000865 	gi|297139929|gb|ADH96687.1| hypothetical protein CTG9301_00280 [Chlamydia trachomatis G/9301]: E-rich region from 27 to 127 corrected with score 54
>CTRA-G93-01-000869 	gi|297139925|gb|ADH96683.1| hypothetical protein CTG9301_00260 [Chlamydia trachomatis G/9301]: S-rich region from 271 to 473 corrected with score 88
>CTRA-G93-01-000872 	gi|297139922|gb|ADH96680.1| histone-like protein 2 [Chlamydia trachomatis G/9301]: K-rich region from 5 to 140 corrected with score 122
>CTRA-G93-01-000872 	gi|297139922|gb|ADH96680.1| histone-like protein 2 [Chlamydia trachomatis G/9301]: A-rich region from 12 to 160 corrected with score 103
>CTRA-G93-01-000915 	gi|297139879|gb|ADH96637.1| hypothetical protein CTG9301_00030 [Chlamydia trachomatis G/9301]: S-rich region from 232 to 361 corrected with score 138
>CTRA-G93-01-000920 	gi|297139874|gb|ADH96632.1| hypothetical protein CTG9301_00005 [Chlamydia trachomatis G/9301]: S-rich region from 2 to 141 corrected with score 74
>CTRA-G97-01-000001 	gi|296436433|gb|ADH18607.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9768]: S-rich region from 107 to 780 corrected with score 115
>CTRA-G97-01-000003 	gi|296436431|gb|ADH18605.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9768]: S-rich region from 56 to 656 corrected with score 142
>CTRA-G97-01-000003 	gi|296436431|gb|ADH18605.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9768]: P-rich region from 153 to 166 corrected with score 41
>CTRA-G97-01-000004 	gi|296436430|gb|ADH18604.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9768]: S-rich region from 105 to 615 corrected with score 68
>CTRA-G97-01-000005 	gi|296436429|gb|ADH18603.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9768]: S-rich region from 560 to 828 corrected with score 77
>CTRA-G97-01-000005 	gi|296436429|gb|ADH18603.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9768]: T-rich region from 647 to 721 corrected with score 46
>CTRA-G97-01-000005 	gi|296436429|gb|ADH18603.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9768]: S-rich region from 51 to 328 corrected with score 40
>CTRA-G97-01-000007 	gi|296436427|gb|ADH18601.1| hypothetical protein G9768_04625 [Chlamydia trachomatis G/9768]: P-rich region from 74 to 141 corrected with score 147
>CTRA-G97-01-000012 	gi|296436422|gb|ADH18596.1| hypothetical protein G9768_04600 [Chlamydia trachomatis G/9768]: Y-rich region from 52 to 64 corrected with score 41
>CTRA-G97-01-000012 	gi|296436422|gb|ADH18596.1| hypothetical protein G9768_04600 [Chlamydia trachomatis G/9768]: K-rich region from 78 to 101 corrected with score 40
>CTRA-G97-01-000013 	gi|296436421|gb|ADH18595.1| hypothetical protein G9768_04595 [Chlamydia trachomatis G/9768]: S-rich region from 8 to 335 corrected with score 119
>CTRA-G97-01-000013 	gi|296436421|gb|ADH18595.1| hypothetical protein G9768_04595 [Chlamydia trachomatis G/9768]: E-rich region from 235 to 283 corrected with score 51
>CTRA-G97-01-000016 	gi|296436418|gb|ADH18592.1| hypothetical protein G9768_04580 [Chlamydia trachomatis G/9768]: S-rich region from 12 to 280 corrected with score 93
>CTRA-G97-01-000016 	gi|296436418|gb|ADH18592.1| hypothetical protein G9768_04580 [Chlamydia trachomatis G/9768]: E-rich region from 227 to 267 corrected with score 46
>CTRA-G97-01-000026 	gi|296436408|gb|ADH18582.1| hypothetical protein G9768_04530 [Chlamydia trachomatis G/9768]: E-rich region from 141 to 310 corrected with score 46
>CTRA-G97-01-000028 	gi|296436406|gb|ADH18580.1| hypothetical protein G9768_04520 [Chlamydia trachomatis G/9768]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-G97-01-000044 	gi|296436390|gb|ADH18564.1| 50S ribosomal protein L35 [Chlamydia trachomatis G/9768]: K-rich region from 3 to 47 corrected with score 40
>CTRA-G97-01-000055 	gi|296436379|gb|ADH18553.1| metalloprotease-insulinase [Chlamydia trachomatis G/9768]: E-rich region from 468 to 508 corrected with score 42
>CTRA-G97-01-000060 	gi|296436374|gb|ADH18548.1| putative membrane transport protein [Chlamydia trachomatis G/9768]: L-rich region from 141 to 186 corrected with score 50
>CTRA-G97-01-000068 	gi|296436366|gb|ADH18540.1| candidate inclusion membrane protein [Chlamydia trachomatis G/9768]: E-rich region from 148 to 254 corrected with score 85
>CTRA-G97-01-000070 	gi|296436364|gb|ADH18538.1| polymorphic outer membrane protein [Chlamydia trachomatis G/9768]: S-rich region from 121 to 671 corrected with score 60
>CTRA-G97-01-000090 	gi|296436344|gb|ADH18518.1| hypothetical protein G9768_04205 [Chlamydia trachomatis G/9768]: A-rich region from 17 to 68 corrected with score 46
>CTRA-G97-01-000098 	gi|296436336|gb|ADH18510.1| 30S ribosomal protein S14 [Chlamydia trachomatis G/9768]: K-rich region from 3 to 53 corrected with score 40
>CTRA-G97-01-000106 	gi|296436328|gb|ADH18502.1| hypothetical protein G9768_04125 [Chlamydia trachomatis G/9768]: P-rich region from 43 to 78 corrected with score 45
>CTRA-G97-01-000117 	gi|296436317|gb|ADH18491.1| hypothetical protein G9768_04070 [Chlamydia trachomatis G/9768]: E-rich region from 313 to 451 corrected with score 41
>CTRA-G97-01-000136 	gi|296436298|gb|ADH18472.1| transketolase [Chlamydia trachomatis G/9768]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-G97-01-000137 	gi|296436297|gb|ADH18471.1| hypothetical protein G9768_03970 [Chlamydia trachomatis G/9768]: F-rich region from 35 to 65 corrected with score 44
>CTRA-G97-01-000144 	gi|296436290|gb|ADH18464.1| histone H1--like developmental protein [Chlamydia trachomatis G/9768]: K-rich region from 4 to 125 corrected with score 110
>CTRA-G97-01-000144 	gi|296436290|gb|ADH18464.1| histone H1--like developmental protein [Chlamydia trachomatis G/9768]: A-rich region from 64 to 117 corrected with score 42
>CTRA-G97-01-000178 	gi|296436256|gb|ADH18430.1| hypothetical protein G9768_03765 [Chlamydia trachomatis G/9768]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-G97-01-000181 	gi|296436253|gb|ADH18427.1| SWF/SNF family helicase [Chlamydia trachomatis G/9768]: E-rich region from 103 to 140 corrected with score 41
>CTRA-G97-01-000183 	gi|296436251|gb|ADH18425.1| trigger factor [Chlamydia trachomatis G/9768]: E-rich region from 255 to 361 corrected with score 46
>CTRA-G97-01-000187 	gi|296436247|gb|ADH18421.1| GTP-binding protein EngA [Chlamydia trachomatis G/9768]: E-rich region from 169 to 212 corrected with score 40
>CTRA-G97-01-000195 	gi|296436239|gb|ADH18413.1| hypothetical protein G9768_03680 [Chlamydia trachomatis G/9768]: S-rich region from 2 to 77 corrected with score 41
>CTRA-G97-01-000219 	gi|296436215|gb|ADH18389.1| Yop proteins translocation protein C/general secretion pathway protein [Chlamydia trachomatis G/9768]: Q-rich region from 127 to 245 corrected with score 66
>CTRA-G97-01-000222 	gi|296436212|gb|ADH18386.1| hypothetical protein G9768_03540 [Chlamydia trachomatis G/9768]: E-rich region from 16 to 89 corrected with score 44
>CTRA-G97-01-000222 	gi|296436212|gb|ADH18386.1| hypothetical protein G9768_03540 [Chlamydia trachomatis G/9768]: E-rich region from 252 to 280 corrected with score 42
>CTRA-G97-01-000223 	gi|296436211|gb|ADH18385.1| hypothetical protein G9768_03535 [Chlamydia trachomatis G/9768]: E-rich region from 13 to 168 corrected with score 111
>CTRA-G97-01-000229 	gi|296436205|gb|ADH18379.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis G/9768]: E-rich region from 100 to 342 corrected with score 165
>CTRA-G97-01-000229 	gi|296436205|gb|ADH18379.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis G/9768]: S-rich region from 109 to 333 corrected with score 108
>CTRA-G97-01-000233 	gi|296436201|gb|ADH18375.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/9768]: K-rich region from 307 to 384 corrected with score 55
>CTRA-G97-01-000253 	gi|296436181|gb|ADH18355.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis G/9768]: K-rich region from 744 to 781 corrected with score 50
>CTRA-G97-01-000253 	gi|296436181|gb|ADH18355.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis G/9768]: E-rich region from 437 to 474 corrected with score 49
>CTRA-G97-01-000254 	gi|296436180|gb|ADH18354.1| hypothetical protein G9768_03375 [Chlamydia trachomatis G/9768]: F-rich region from 169 to 204 corrected with score 48
>CTRA-G97-01-000261 	gi|296436173|gb|ADH18347.1| hypothetical protein G9768_03340 [Chlamydia trachomatis G/9768]: K-rich region from 101 to 140 corrected with score 44
>CTRA-G97-01-000276 	gi|296436158|gb|ADH18332.1| CHLPN 76 kD protein-like protein [Chlamydia trachomatis G/9768]: S-rich region from 2 to 601 corrected with score 181
>CTRA-G97-01-000277 	gi|296436157|gb|ADH18331.1| hypothetical protein G9768_03260 [Chlamydia trachomatis G/9768]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-G97-01-000280 	gi|296436154|gb|ADH18328.1| hypothetical protein G9768_03245 [Chlamydia trachomatis G/9768]: S-rich region from 8 to 83 corrected with score 42
>CTRA-G97-01-000281 	gi|296436153|gb|ADH18327.1| 30S ribosomal protein S20 [Chlamydia trachomatis G/9768]: K-rich region from 4 to 45 corrected with score 47
>CTRA-G97-01-000282 	gi|296436152|gb|ADH18326.1| putative integral membrane protein [Chlamydia trachomatis G/9768]: Q-rich region from 85 to 225 corrected with score 65
>CTRA-G97-01-000298 	gi|296436136|gb|ADH18310.1| invasin repeat-containing phosphatase [Chlamydia trachomatis G/9768]: Q-rich region from 52 to 131 corrected with score 50
>CTRA-G97-01-000301 	gi|296436133|gb|ADH18307.1| histone H1-I [Chlamydia trachomatis G/9768]: P-rich region from 47 to 101 corrected with score 60
>CTRA-G97-01-000301 	gi|296436133|gb|ADH18307.1| histone H1-I [Chlamydia trachomatis G/9768]: K-rich region from 30 to 115 corrected with score 42
>CTRA-G97-01-000321 	gi|296436113|gb|ADH18287.1| hypothetical protein G9768_03040 [Chlamydia trachomatis G/9768]: S-rich region from 20 to 436 corrected with score 197
>CTRA-G97-01-000321 	gi|296436113|gb|ADH18287.1| hypothetical protein G9768_03040 [Chlamydia trachomatis G/9768]: A-rich region from 231 to 313 corrected with score 54
>CTRA-G97-01-000321 	gi|296436113|gb|ADH18287.1| hypothetical protein G9768_03040 [Chlamydia trachomatis G/9768]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-G97-01-000322 	gi|296436112|gb|ADH18286.1| putative type III secretion system membrane protein [Chlamydia trachomatis G/9768]: S-rich region from 2 to 308 corrected with score 124
>CTRA-G97-01-000322 	gi|296436112|gb|ADH18286.1| putative type III secretion system membrane protein [Chlamydia trachomatis G/9768]: A-rich region from 278 to 487 corrected with score 94
>CTRA-G97-01-000324 	gi|296436110|gb|ADH18284.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis G/9768]: K-rich region from 177 to 232 corrected with score 58
>CTRA-G97-01-000328 	gi|296436106|gb|ADH18280.1| general secretion pathway protein D [Chlamydia trachomatis G/9768]: S-rich region from 388 to 444 corrected with score 48
>CTRA-G97-01-000336 	gi|296436098|gb|ADH18272.1| type III secretion system, membrane protein [Chlamydia trachomatis G/9768]: M-rich region from 164 to 256 corrected with score 47
>CTRA-G97-01-000338 	gi|296436096|gb|ADH18270.1| type III secretion system protein [Chlamydia trachomatis G/9768]: L-rich region from 93 to 121 corrected with score 44
>CTRA-G97-01-000338 	gi|296436096|gb|ADH18270.1| type III secretion system protein [Chlamydia trachomatis G/9768]: M-rich region from 229 to 303 corrected with score 41
>CTRA-G97-01-000342 	gi|296436092|gb|ADH18266.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/9768]: E-rich region from 287 to 325 corrected with score 42
>CTRA-G97-01-000357 	gi|296436077|gb|ADH18251.1| putative sugar phosphate permease [Chlamydia trachomatis G/9768]: E-rich region from 221 to 252 corrected with score 43
>CTRA-G97-01-000372 	gi|296436062|gb|ADH18236.1| hypothetical protein G9768_02775 [Chlamydia trachomatis G/9768]: A-rich region from 43 to 214 corrected with score 51
>CTRA-G97-01-000390 	gi|296436044|gb|ADH18218.1| 50S ribosomal protein L15 [Chlamydia trachomatis G/9768]: G-rich region from 21 to 55 corrected with score 42
>CTRA-G97-01-000393 	gi|296436041|gb|ADH18215.1| 30S ribosomal protein S11 [Chlamydia trachomatis G/9768]: A-rich region from 48 to 107 corrected with score 43
>CTRA-G97-01-000397 	gi|296436037|gb|ADH18211.1| hypothetical protein G9768_02650 [Chlamydia trachomatis G/9768]: E-rich region from 138 to 288 corrected with score 64
>CTRA-G97-01-000397 	gi|296436037|gb|ADH18211.1| hypothetical protein G9768_02650 [Chlamydia trachomatis G/9768]: K-rich region from 138 to 164 corrected with score 49
>CTRA-G97-01-000398 	gi|296436036|gb|ADH18210.1| hypothetical protein G9768_02645 [Chlamydia trachomatis G/9768]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-G97-01-000412 	gi|296436022|gb|ADH18196.1| transcription termination factor Rho [Chlamydia trachomatis G/9768]: E-rich region from 2 to 44 corrected with score 41
>CTRA-G97-01-000419 	gi|296436015|gb|ADH18189.1| hypothetical protein G9768_02540 [Chlamydia trachomatis G/9768]: L-rich region from 20 to 81 corrected with score 50
>CTRA-G97-01-000450 	gi|296435984|gb|ADH18158.1| hypothetical protein G9768_02380 [Chlamydia trachomatis G/9768]: S-rich region from 2 to 728 corrected with score 322
>CTRA-G97-01-000450 	gi|296435984|gb|ADH18158.1| hypothetical protein G9768_02380 [Chlamydia trachomatis G/9768]: T-rich region from 11 to 116 corrected with score 85
>CTRA-G97-01-000450 	gi|296435984|gb|ADH18158.1| hypothetical protein G9768_02380 [Chlamydia trachomatis G/9768]: T-rich region from 541 to 586 corrected with score 55
>CTRA-G97-01-000467 	gi|296435967|gb|ADH18141.1| hypothetical protein G9768_02295 [Chlamydia trachomatis G/9768]: V-rich region from 41 to 87 corrected with score 40
>CTRA-G97-01-000471 	gi|296435963|gb|ADH18137.1| 30S ribosomal protein S12 [Chlamydia trachomatis G/9768]: K-rich region from 9 to 51 corrected with score 42
>CTRA-G97-01-000495 	gi|296435939|gb|ADH18113.1| GTPase ObgE [Chlamydia trachomatis G/9768]: G-rich region from 31 to 43 corrected with score 43
>CTRA-G97-01-000496 	gi|296435938|gb|ADH18112.1| metal transporter, membrane permease component [Chlamydia trachomatis G/9768]: L-rich region from 186 to 273 corrected with score 56
>CTRA-G97-01-000499 	gi|296435935|gb|ADH18109.1| putative outer membrane protein C [Chlamydia trachomatis G/9768]: S-rich region from 5 to 1353 corrected with score 522
>CTRA-G97-01-000499 	gi|296435935|gb|ADH18109.1| putative outer membrane protein C [Chlamydia trachomatis G/9768]: T-rich region from 1326 to 1350 corrected with score 53
>CTRA-G97-01-000499 	gi|296435935|gb|ADH18109.1| putative outer membrane protein C [Chlamydia trachomatis G/9768]: N-rich region from 635 to 707 corrected with score 52
>CTRA-G97-01-000500 	gi|296435934|gb|ADH18108.1| putative outer membrane protein B [Chlamydia trachomatis G/9768]: S-rich region from 31 to 1335 corrected with score 498
>CTRA-G97-01-000500 	gi|296435934|gb|ADH18108.1| putative outer membrane protein B [Chlamydia trachomatis G/9768]: A-rich region from 800 to 840 corrected with score 51
>CTRA-G97-01-000500 	gi|296435934|gb|ADH18108.1| putative outer membrane protein B [Chlamydia trachomatis G/9768]: T-rich region from 35 to 99 corrected with score 47
>CTRA-G97-01-000515 	gi|296435919|gb|ADH18093.1| hypothetical protein G9768_02055 [Chlamydia trachomatis G/9768]: E-rich region from 25 to 174 corrected with score 62
>CTRA-G97-01-000516 	gi|296435918|gb|ADH18092.1| exoribonuclease II [Chlamydia trachomatis G/9768]: K-rich region from 653 to 694 corrected with score 80
>CTRA-G97-01-000517 	gi|296435917|gb|ADH18091.1| molecular chaperone DnaK [Chlamydia trachomatis G/9768]: S-rich region from 575 to 647 corrected with score 56
>CTRA-G97-01-000517 	gi|296435917|gb|ADH18091.1| molecular chaperone DnaK [Chlamydia trachomatis G/9768]: E-rich region from 493 to 577 corrected with score 52
>CTRA-G97-01-000518 	gi|296435916|gb|ADH18090.1| HSP-70 cofactor [Chlamydia trachomatis G/9768]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-G97-01-000521 	gi|296435913|gb|ADH18087.1| hypothetical protein G9768_02025 [Chlamydia trachomatis G/9768]: S-rich region from 2 to 133 corrected with score 45
>CTRA-G97-01-000535 	gi|296435899|gb|ADH18073.1| GTP binding protein [Chlamydia trachomatis G/9768]: R-rich region from 193 to 225 corrected with score 42
>CTRA-G97-01-000541 	gi|296435893|gb|ADH18067.1| hypothetical protein G9768_01925 [Chlamydia trachomatis G/9768]: H-rich region from 5 to 20 corrected with score 46
>CTRA-G97-01-000553 	gi|296435881|gb|ADH18055.1| hypothetical protein G9768_01865 [Chlamydia trachomatis G/9768]: E-rich region from 41 to 208 corrected with score 60
>CTRA-G97-01-000563 	gi|296435871|gb|ADH18045.1| preprotein translocase subunit SecG [Chlamydia trachomatis G/9768]: L-rich region from 1 to 25 corrected with score 41
>CTRA-G97-01-000574 	gi|296435860|gb|ADH18034.1| chaperone protein DnaJ [Chlamydia trachomatis G/9768]: G-rich region from 67 to 134 corrected with score 74
>CTRA-G97-01-000582 	gi|296435852|gb|ADH18026.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis G/9768]: S-rich region from 375 to 443 corrected with score 43
>CTRA-G97-01-000583 	gi|296435851|gb|ADH18025.1| excinuclease ABC subunit A [Chlamydia trachomatis G/9768]: P-rich region from 918 to 934 corrected with score 40
>CTRA-G97-01-000592 	gi|296435842|gb|ADH18016.1| hypothetical protein G9768_01665 [Chlamydia trachomatis G/9768]: T-rich region from 516 to 569 corrected with score 55
>CTRA-G97-01-000592 	gi|296435842|gb|ADH18016.1| hypothetical protein G9768_01665 [Chlamydia trachomatis G/9768]: D-rich region from 30 to 39 corrected with score 40
>CTRA-G97-01-000602 	gi|296435832|gb|ADH18006.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis G/9768]: A-rich region from 34 to 56 corrected with score 45
>CTRA-G97-01-000608 	gi|296435826|gb|ADH18000.1| V-type ATP synthase subunit E [Chlamydia trachomatis G/9768]: E-rich region from 18 to 70 corrected with score 40
>CTRA-G97-01-000628 	gi|296435806|gb|ADH17980.1| hypothetical protein G9768_01485 [Chlamydia trachomatis G/9768]: K-rich region from 70 to 292 corrected with score 87
>CTRA-G97-01-000628 	gi|296435806|gb|ADH17980.1| hypothetical protein G9768_01485 [Chlamydia trachomatis G/9768]: A-rich region from 176 to 300 corrected with score 45
>CTRA-G97-01-000629 	gi|296435805|gb|ADH17979.1| candidate inclusion membrane protein [Chlamydia trachomatis G/9768]: A-rich region from 32 to 93 corrected with score 53
>CTRA-G97-01-000632 	gi|296435802|gb|ADH17976.1| ATP-dependent Clp protease [Chlamydia trachomatis G/9768]: E-rich region from 443 to 500 corrected with score 57
>CTRA-G97-01-000632 	gi|296435802|gb|ADH17976.1| ATP-dependent Clp protease [Chlamydia trachomatis G/9768]: S-rich region from 153 to 171 corrected with score 44
>CTRA-G97-01-000642 	gi|296435792|gb|ADH17966.1| hypothetical protein G9768_01415 [Chlamydia trachomatis G/9768]: E-rich region from 32 to 82 corrected with score 40
>CTRA-G97-01-000688 	gi|296435746|gb|ADH17920.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis G/9768]: L-rich region from 16 to 105 corrected with score 41
>CTRA-G97-01-000689 	gi|296435745|gb|ADH17919.1| hypothetical protein G9768_01180 [Chlamydia trachomatis G/9768]: A-rich region from 8 to 74 corrected with score 40
>CTRA-G97-01-000690 	gi|296435744|gb|ADH17918.1| hypothetical protein G9768_01175 [Chlamydia trachomatis G/9768]: V-rich region from 37 to 76 corrected with score 40
>CTRA-G97-01-000695 	gi|296435739|gb|ADH17913.1| hypothetical protein G9768_01150 [Chlamydia trachomatis G/9768]: D-rich region from 248 to 262 corrected with score 41
>CTRA-G97-01-000700 	gi|296435734|gb|ADH17908.1| prenyltransferase [Chlamydia trachomatis G/9768]: L-rich region from 90 to 162 corrected with score 44
>CTRA-G97-01-000705 	gi|296435729|gb|ADH17903.1| hypothetical protein G9768_01100 [Chlamydia trachomatis G/9768]: V-rich region from 37 to 98 corrected with score 43
>CTRA-G97-01-000763 	gi|296435671|gb|ADH17845.1| phospholipase D endonuclease superfamily protein [Chlamydia trachomatis G/9768]: S-rich region from 2 to 100 corrected with score 59
>CTRA-G97-01-000765 	gi|296435669|gb|ADH17843.1| MAC/perforin family protein [Chlamydia trachomatis G/9768]: S-rich region from 383 to 549 corrected with score 92
>CTRA-G97-01-000771 	gi|296435663|gb|ADH17837.1| hypothetical protein G9768_00760 [Chlamydia trachomatis G/9768]: Q-rich region from 961 to 1155 corrected with score 43
>CTRA-G97-01-000774 	gi|296435660|gb|ADH17834.1| hypothetical protein G9768_00745 [Chlamydia trachomatis G/9768]: T-rich region from 2 to 62 corrected with score 47
>CTRA-G97-01-000792 	gi|296435642|gb|ADH17816.1| 30S ribosomal protein S9 [Chlamydia trachomatis G/9768]: K-rich region from 88 to 129 corrected with score 49
>CTRA-G97-01-000800 	gi|296435634|gb|ADH17808.1| inclusion membrane protein G [Chlamydia trachomatis G/9768]: S-rich region from 89 to 166 corrected with score 53
>CTRA-G97-01-000801 	gi|296435633|gb|ADH17807.1| inclusion membrane protein F [Chlamydia trachomatis G/9768]: A-rich region from 25 to 88 corrected with score 41
>CTRA-G97-01-000805 	gi|296435629|gb|ADH17803.1| chaperone-protease ClpB [Chlamydia trachomatis G/9768]: E-rich region from 412 to 534 corrected with score 58
>CTRA-G97-01-000813 	gi|296435621|gb|ADH17795.1| hypothetical protein G9768_00545 [Chlamydia trachomatis G/9768]: S-rich region from 2 to 229 corrected with score 104
>CTRA-G97-01-000813 	gi|296435621|gb|ADH17795.1| hypothetical protein G9768_00545 [Chlamydia trachomatis G/9768]: C-rich region from 308 to 350 corrected with score 47
>CTRA-G97-01-000821 	gi|296435613|gb|ADH17787.1| translation initiation factor IF-2 [Chlamydia trachomatis G/9768]: S-rich region from 33 to 286 corrected with score 104
>CTRA-G97-01-000821 	gi|296435613|gb|ADH17787.1| translation initiation factor IF-2 [Chlamydia trachomatis G/9768]: K-rich region from 2 to 57 corrected with score 43
>CTRA-G97-01-000821 	gi|296435613|gb|ADH17787.1| translation initiation factor IF-2 [Chlamydia trachomatis G/9768]: E-rich region from 123 to 156 corrected with score 40
>CTRA-G97-01-000827 	gi|296435607|gb|ADH17781.1| low calcium response protein D (predicted to be part of the TTSS apparatus) [Chlamydia trachomatis G/9768]: L-rich region from 27 to 91 corrected with score 51
>CTRA-G97-01-000828 	gi|296435606|gb|ADH17780.1| low calcium response E [Chlamydia trachomatis G/9768]: P-rich region from 385 to 421 corrected with score 55
>CTRA-G97-01-000828 	gi|296435606|gb|ADH17780.1| low calcium response E [Chlamydia trachomatis G/9768]: E-rich region from 61 to 127 corrected with score 51
>CTRA-G97-01-000835 	gi|296435599|gb|ADH17773.1| hypothetical protein G9768_00425 [Chlamydia trachomatis G/9768]: S-rich region from 2 to 387 corrected with score 86
>CTRA-G97-01-000835 	gi|296435599|gb|ADH17773.1| hypothetical protein G9768_00425 [Chlamydia trachomatis G/9768]: D-rich region from 526 to 560 corrected with score 43
>CTRA-G97-01-000836 	gi|296435598|gb|ADH17772.1| late transcription unit B protein [Chlamydia trachomatis G/9768]: K-rich region from 2 to 53 corrected with score 40
>CTRA-G97-01-000852 	gi|296435582|gb|ADH17756.1| ADP,ATP carrier protein [Chlamydia trachomatis G/9768]: A-rich region from 435 to 523 corrected with score 50
>CTRA-G97-01-000859 	gi|296435575|gb|ADH17749.1| hypothetical protein G9768_00305 [Chlamydia trachomatis G/9768]: P-rich region from 78 to 119 corrected with score 66
>CTRA-G97-01-000864 	gi|296435570|gb|ADH17744.1| hypothetical protein G9768_00280 [Chlamydia trachomatis G/9768]: E-rich region from 27 to 127 corrected with score 54
>CTRA-G97-01-000868 	gi|296435566|gb|ADH17740.1| hypothetical protein G9768_00260 [Chlamydia trachomatis G/9768]: S-rich region from 271 to 473 corrected with score 88
>CTRA-G97-01-000871 	gi|296435563|gb|ADH17737.1| histone-like protein 2 [Chlamydia trachomatis G/9768]: K-rich region from 5 to 140 corrected with score 122
>CTRA-G97-01-000871 	gi|296435563|gb|ADH17737.1| histone-like protein 2 [Chlamydia trachomatis G/9768]: A-rich region from 12 to 160 corrected with score 103
>CTRA-G97-01-000914 	gi|296435520|gb|ADH17694.1| hypothetical protein G9768_00030 [Chlamydia trachomatis G/9768]: S-rich region from 232 to 361 corrected with score 138
>CTRA-G97-01-000919 	gi|296435515|gb|ADH17689.1| hypothetical protein G9768_00005 [Chlamydia trachomatis G/9768]: S-rich region from 2 to 141 corrected with score 74
>CTRA-L2B-01-000002 	gi|166154851|ref|YP_001653106.1| hypothetical protein CTLon_0003 [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 101 to 140 corrected with score 44
>CTRA-L2B-01-000009 	gi|166154858|ref|YP_001653113.1| hypothetical protein CTLon_0010 [Chlamydia trachomatis L2b/UCH-1/proctitis]: F-rich region from 169 to 204 corrected with score 47
>CTRA-L2B-01-000010 	gi|166154859|ref|YP_001653114.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 744 to 781 corrected with score 50
>CTRA-L2B-01-000010 	gi|166154859|ref|YP_001653114.1| DNA topoisomerase I/SWI domain fusion protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 437 to 474 corrected with score 49
>CTRA-L2B-01-000029 	gi|166154878|ref|YP_001653133.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 307 to 384 corrected with score 55
>CTRA-L2B-01-000032 	gi|166154881|ref|YP_001653136.1| phosphopeptide binding protein ( to be a TTSS protein) [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 100 to 344 corrected with score 167
>CTRA-L2B-01-000032 	gi|166154881|ref|YP_001653136.1| phosphopeptide binding protein ( to be a TTSS protein) [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 109 to 333 corrected with score 107
>CTRA-L2B-01-000038 	gi|166154887|ref|YP_001653142.1| hypothetical protein CTLon_0039 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 13 to 168 corrected with score 107
>CTRA-L2B-01-000039 	gi|166154888|ref|YP_001653143.1| hypothetical protein CTLon_0040 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 37 to 125 corrected with score 49
>CTRA-L2B-01-000039 	gi|166154888|ref|YP_001653143.1| hypothetical protein CTLon_0040 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 252 to 280 corrected with score 42
>CTRA-L2B-01-000042 	gi|166154891|ref|YP_001653146.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis L2b/UCH-1/proctitis]: Q-rich region from 127 to 245 corrected with score 61
>CTRA-L2B-01-000063 	gi|166154912|ref|YP_001653167.1| hypothetical protein CTLon_0064 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 77 corrected with score 41
>CTRA-L2B-01-000075 	gi|166154924|ref|YP_001653179.1| trigger factor [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 255 to 361 corrected with score 47
>CTRA-L2B-01-000079 	gi|166154928|ref|YP_001653183.1| hypothetical protein CTLon_0080 [Chlamydia trachomatis L2b/UCH-1/proctitis]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-L2B-01-000111 	gi|166154960|ref|YP_001653215.1| histone H1--like developmental protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 4 to 125 corrected with score 112
>CTRA-L2B-01-000118 	gi|166154967|ref|YP_001653222.1| transketolase [Chlamydia trachomatis L2b/UCH-1/proctitis]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-L2B-01-000147 	gi|166154996|ref|YP_001653251.1| hypothetical protein CTLon_0148 [Chlamydia trachomatis L2b/UCH-1/proctitis]: P-rich region from 43 to 78 corrected with score 45
>CTRA-L2B-01-000153 	gi|166155002|ref|YP_001653257.1| 50S ribosomal protein L34 [Chlamydia trachomatis L2b/UCH-1/proctitis]: R-rich region from 2 to 40 corrected with score 41
>CTRA-L2B-01-000155 	gi|166155004|ref|YP_001653259.1| 30S ribosomal protein S14 [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 3 to 53 corrected with score 40
>CTRA-L2B-01-000162 	gi|166155011|ref|YP_001653266.1| hypothetical protein CTLon_0164 [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 20 to 71 corrected with score 46
>CTRA-L2B-01-000181 	gi|166155030|ref|YP_001653285.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 121 to 671 corrected with score 60
>CTRA-L2B-01-000182 	gi|166155031|ref|YP_001653286.1| hypothetical protein CTLon_0184 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 179 to 254 corrected with score 73
>CTRA-L2B-01-000189 	gi|166155038|ref|YP_001653293.1| putative membrane transport protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: L-rich region from 141 to 186 corrected with score 50
>CTRA-L2B-01-000194 	gi|166155043|ref|YP_001653298.1| metalloprotease-insulinase [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 468 to 508 corrected with score 42
>CTRA-L2B-01-000219 	gi|166155068|ref|YP_001653323.1| hypothetical protein CTLon_0221 [Chlamydia trachomatis L2b/UCH-1/proctitis]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-L2B-01-000221 	gi|166155070|ref|YP_001653325.1| putative integral membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 141 to 310 corrected with score 46
>CTRA-L2B-01-000232 	gi|166155081|ref|YP_001653336.1| hypothetical protein CTLon_0235 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 12 to 280 corrected with score 105
>CTRA-L2B-01-000232 	gi|166155081|ref|YP_001653336.1| hypothetical protein CTLon_0235 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 227 to 267 corrected with score 46
>CTRA-L2B-01-000233 	gi|166155082|ref|YP_001653337.1| putative type III secretion translocator [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 233 corrected with score 103
>CTRA-L2B-01-000235 	gi|166155084|ref|YP_001653339.1| hypothetical protein CTLon_0238 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 8 to 335 corrected with score 119
>CTRA-L2B-01-000235 	gi|166155084|ref|YP_001653339.1| hypothetical protein CTLon_0238 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 235 to 283 corrected with score 51
>CTRA-L2B-01-000240 	gi|166155089|ref|YP_001653344.1| hypothetical protein CTLon_0243 [Chlamydia trachomatis L2b/UCH-1/proctitis]: P-rich region from 74 to 132 corrected with score 107
>CTRA-L2B-01-000241 	gi|166155090|ref|YP_001653345.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 343 to 600 corrected with score 61
>CTRA-L2B-01-000242 	gi|166155091|ref|YP_001653346.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: T-rich region from 646 to 722 corrected with score 74
>CTRA-L2B-01-000242 	gi|166155091|ref|YP_001653346.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 51 to 328 corrected with score 41
>CTRA-L2B-01-000242 	gi|166155091|ref|YP_001653346.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 659 to 705 corrected with score 41
>CTRA-L2B-01-000243 	gi|166155092|ref|YP_001653347.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 105 to 615 corrected with score 67
>CTRA-L2B-01-000244 	gi|166155093|ref|YP_001653348.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 56 to 622 corrected with score 127
>CTRA-L2B-01-000246 	gi|166155095|ref|YP_001653350.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 107 to 780 corrected with score 120
>CTRA-L2B-01-000247 	gi|166155096|ref|YP_001653351.1| hypothetical protein CTLon_0250 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 140 corrected with score 64
>CTRA-L2B-01-000252 	gi|166155101|ref|YP_001653356.1| hypothetical protein CTLon_0255 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 232 to 361 corrected with score 138
>CTRA-L2B-01-000293 	gi|166155142|ref|YP_001653397.1| histone-like protein 2 [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 7 to 178 corrected with score 161
>CTRA-L2B-01-000293 	gi|166155142|ref|YP_001653397.1| histone-like protein 2 [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 14 to 198 corrected with score 128
>CTRA-L2B-01-000296 	gi|166155145|ref|YP_001653400.1| hypothetical protein CTLon_0300 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 273 to 479 corrected with score 78
>CTRA-L2B-01-000297 	gi|166155146|ref|YP_001653401.1| hypothetical protein CTLon_0301 [Chlamydia trachomatis L2b/UCH-1/proctitis]: T-rich region from 162 to 553 corrected with score 176
>CTRA-L2B-01-000297 	gi|166155146|ref|YP_001653401.1| hypothetical protein CTLon_0301 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 366 to 554 corrected with score 49
>CTRA-L2B-01-000298 	gi|166155147|ref|YP_001653402.1| hypothetical protein CTLon_0302 [Chlamydia trachomatis L2b/UCH-1/proctitis]: T-rich region from 212 to 557 corrected with score 149
>CTRA-L2B-01-000298 	gi|166155147|ref|YP_001653402.1| hypothetical protein CTLon_0302 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 402 to 558 corrected with score 53
>CTRA-L2B-01-000298 	gi|166155147|ref|YP_001653402.1| hypothetical protein CTLon_0302 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 113 to 155 corrected with score 46
>CTRA-L2B-01-000300 	gi|166155149|ref|YP_001653404.1| hypothetical protein CTLon_0304 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 27 to 127 corrected with score 51
>CTRA-L2B-01-000305 	gi|166155154|ref|YP_001653409.1| hypothetical protein CTLon_0309 [Chlamydia trachomatis L2b/UCH-1/proctitis]: P-rich region from 78 to 119 corrected with score 67
>CTRA-L2B-01-000312 	gi|166155161|ref|YP_001653416.1| ADP,ATP carrier protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 435 to 523 corrected with score 50
>CTRA-L2B-01-000317 	gi|166155166|ref|YP_001653421.1| ABC transport protein, membrane permease [Chlamydia trachomatis L2b/UCH-1/proctitis]: V-rich region from 39 to 304 corrected with score 42
>CTRA-L2B-01-000329 	gi|166155178|ref|YP_001653433.1| hypothetical protein CTLon_0333 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 387 corrected with score 102
>CTRA-L2B-01-000329 	gi|166155178|ref|YP_001653433.1| hypothetical protein CTLon_0333 [Chlamydia trachomatis L2b/UCH-1/proctitis]: D-rich region from 526 to 560 corrected with score 43
>CTRA-L2B-01-000336 	gi|166155185|ref|YP_001653440.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 233 corrected with score 56
>CTRA-L2B-01-000336 	gi|166155185|ref|YP_001653440.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis L2b/UCH-1/proctitis]: P-rich region from 385 to 421 corrected with score 47
>CTRA-L2B-01-000336 	gi|166155185|ref|YP_001653440.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 28 to 111 corrected with score 44
>CTRA-L2B-01-000337 	gi|166155186|ref|YP_001653441.1| low calcium response protein D ( to be part of the TTSS apparatus) [Chlamydia trachomatis L2b/UCH-1/proctitis]: L-rich region from 27 to 91 corrected with score 51
>CTRA-L2B-01-000343 	gi|166155192|ref|YP_001653447.1| translation initiation factor IF-2 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 33 to 290 corrected with score 102
>CTRA-L2B-01-000343 	gi|166155192|ref|YP_001653447.1| translation initiation factor IF-2 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 123 to 159 corrected with score 44
>CTRA-L2B-01-000343 	gi|166155192|ref|YP_001653447.1| translation initiation factor IF-2 [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 2 to 57 corrected with score 44
>CTRA-L2B-01-000352 	gi|166155201|ref|YP_001653456.1| hypothetical protein CTLon_0356 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 229 corrected with score 105
>CTRA-L2B-01-000352 	gi|166155201|ref|YP_001653456.1| hypothetical protein CTLon_0356 [Chlamydia trachomatis L2b/UCH-1/proctitis]: C-rich region from 308 to 350 corrected with score 48
>CTRA-L2B-01-000360 	gi|166155209|ref|YP_001653464.1| chaperone-protease ClpB [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 412 to 534 corrected with score 58
>CTRA-L2B-01-000365 	gi|166155214|ref|YP_001653469.1| inclusion membrane protein G [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 87 to 166 corrected with score 54
>CTRA-L2B-01-000373 	gi|166155222|ref|YP_001653477.1| 30S ribosomal protein S9 [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 88 to 129 corrected with score 47
>CTRA-L2B-01-000391 	gi|166155240|ref|YP_001653495.1| hypothetical protein CTLon_0395 [Chlamydia trachomatis L2b/UCH-1/proctitis]: T-rich region from 2 to 62 corrected with score 46
>CTRA-L2B-01-000394 	gi|166155243|ref|YP_001653498.1| putative integral membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: Q-rich region from 961 to 1155 corrected with score 43
>CTRA-L2B-01-000400 	gi|166155249|ref|YP_001653504.1| MAC/perforin family protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 383 to 549 corrected with score 92
>CTRA-L2B-01-000402 	gi|166155251|ref|YP_001653506.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 96 corrected with score 55
>CTRA-L2B-01-000405 	gi|166155254|ref|YP_001653509.1| hypothetical protein CTLon_0413 [Chlamydia trachomatis L2b/UCH-1/proctitis]: L-rich region from 34 to 64 corrected with score 41
>CTRA-L2B-01-000450 	gi|166155299|ref|YP_001653554.1| hypothetical protein CTLon_0461 [Chlamydia trachomatis L2b/UCH-1/proctitis]: V-rich region from 37 to 98 corrected with score 43
>CTRA-L2B-01-000455 	gi|166155304|ref|YP_001653559.1| prenyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis]: L-rich region from 90 to 162 corrected with score 44
>CTRA-L2B-01-000465 	gi|166155314|ref|YP_001653569.1| hypothetical protein CTLon_0476 [Chlamydia trachomatis L2b/UCH-1/proctitis]: V-rich region from 37 to 76 corrected with score 42
>CTRA-L2B-01-000466 	gi|166155315|ref|YP_001653570.1| hypothetical protein CTLon_0477 [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 8 to 74 corrected with score 40
>CTRA-L2B-01-000467 	gi|166155316|ref|YP_001653571.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: L-rich region from 16 to 105 corrected with score 41
>CTRA-L2B-01-000486 	gi|166155335|ref|YP_001653590.1| hypothetical protein CTLon_0497 [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 28 to 96 corrected with score 40
>CTRA-L2B-01-000523 	gi|166155372|ref|YP_001653627.1| ATP-dependent Clp protease [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 443 to 500 corrected with score 57
>CTRA-L2B-01-000523 	gi|166155372|ref|YP_001653627.1| ATP-dependent Clp protease [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 153 to 171 corrected with score 44
>CTRA-L2B-01-000525 	gi|166155374|ref|YP_001653629.1| hypothetical protein CTLon_0536 [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 32 to 93 corrected with score 53
>CTRA-L2B-01-000526 	gi|166155375|ref|YP_001653630.1| hypothetical protein CTLon_0537 [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 70 to 294 corrected with score 90
>CTRA-L2B-01-000526 	gi|166155375|ref|YP_001653630.1| hypothetical protein CTLon_0537 [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 178 to 302 corrected with score 43
>CTRA-L2B-01-000546 	gi|166155395|ref|YP_001653650.1| V-type ATP synthase subunit E [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 18 to 70 corrected with score 40
>CTRA-L2B-01-000552 	gi|166155401|ref|YP_001653656.1| 50S ribosomal protein L7/L12 [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 34 to 56 corrected with score 45
>CTRA-L2B-01-000570 	gi|166155419|ref|YP_001653674.1| excinuclease ABC subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]: P-rich region from 918 to 934 corrected with score 40
>CTRA-L2B-01-000571 	gi|166155420|ref|YP_001653675.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 375 to 443 corrected with score 44
>CTRA-L2B-01-000579 	gi|166155428|ref|YP_001653683.1| heat shock chaperone protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: G-rich region from 67 to 134 corrected with score 74
>CTRA-L2B-01-000590 	gi|166155439|ref|YP_001653694.1| preprotein translocase subunit SecG [Chlamydia trachomatis L2b/UCH-1/proctitis]: L-rich region from 1 to 25 corrected with score 41
>CTRA-L2B-01-000597 	gi|166155446|ref|YP_001653701.1| hypothetical protein CTLon_0612 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 94 to 208 corrected with score 63
>CTRA-L2B-01-000609 	gi|166155458|ref|YP_001653713.1| hypothetical protein CTLon_0624 [Chlamydia trachomatis L2b/UCH-1/proctitis]: H-rich region from 5 to 20 corrected with score 46
>CTRA-L2B-01-000615 	gi|166155464|ref|YP_001653719.1| putative nucleotide-binding protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: R-rich region from 193 to 225 corrected with score 42
>CTRA-L2B-01-000629 	gi|166155478|ref|YP_001653733.1| hypothetical protein CTLon_0645 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 133 corrected with score 40
>CTRA-L2B-01-000633 	gi|166155482|ref|YP_001653737.1| molecular chaperone DnaK [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 575 to 647 corrected with score 56
>CTRA-L2B-01-000633 	gi|166155482|ref|YP_001653737.1| molecular chaperone DnaK [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 493 to 577 corrected with score 52
>CTRA-L2B-01-000634 	gi|166155483|ref|YP_001653738.1| exoribonuclease II [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 653 to 694 corrected with score 81
>CTRA-L2B-01-000635 	gi|166155484|ref|YP_001653739.1| hypothetical protein CTLon_0651 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 25 to 174 corrected with score 66
>CTRA-L2B-01-000650 	gi|166155499|ref|YP_001653754.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 31 to 1333 corrected with score 508
>CTRA-L2B-01-000650 	gi|166155499|ref|YP_001653754.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 801 to 841 corrected with score 51
>CTRA-L2B-01-000650 	gi|166155499|ref|YP_001653754.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: T-rich region from 35 to 99 corrected with score 50
>CTRA-L2B-01-000651 	gi|166155500|ref|YP_001653755.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 5 to 1357 corrected with score 530
>CTRA-L2B-01-000651 	gi|166155500|ref|YP_001653755.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: T-rich region from 1330 to 1354 corrected with score 53
>CTRA-L2B-01-000651 	gi|166155500|ref|YP_001653755.1| polymorphic outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 625 to 733 corrected with score 47
>CTRA-L2B-01-000654 	gi|166155503|ref|YP_001653758.1| metal transporter, membrane permease component [Chlamydia trachomatis L2b/UCH-1/proctitis]: L-rich region from 186 to 273 corrected with score 56
>CTRA-L2B-01-000655 	gi|166155504|ref|YP_001653759.1| GTPase ObgE [Chlamydia trachomatis L2b/UCH-1/proctitis]: G-rich region from 31 to 43 corrected with score 43
>CTRA-L2B-01-000678 	gi|166155527|ref|YP_001653782.1| 30S ribosomal protein S12 [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 15 to 57 corrected with score 42
>CTRA-L2B-01-000682 	gi|166155531|ref|YP_001653786.1| 60kD cysteine-rich outer membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 51 to 91 corrected with score 40
>CTRA-L2B-01-000696 	gi|166155545|ref|YP_001653800.1| translocated actin-recruiting protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 841 corrected with score 424
>CTRA-L2B-01-000696 	gi|166155545|ref|YP_001653800.1| translocated actin-recruiting protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: T-rich region from 11 to 116 corrected with score 84
>CTRA-L2B-01-000696 	gi|166155545|ref|YP_001653800.1| translocated actin-recruiting protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: T-rich region from 654 to 699 corrected with score 57
>CTRA-L2B-01-000696 	gi|166155545|ref|YP_001653800.1| translocated actin-recruiting protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: N-rich region from 646 to 712 corrected with score 40
>CTRA-L2B-01-000699 	gi|166155548|ref|YP_001653803.1| peptide chain release factor 2 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 24 to 100 corrected with score 42
>CTRA-L2B-01-000724 	gi|166155573|ref|YP_001653828.1| hypothetical protein CTLon_0740 [Chlamydia trachomatis L2b/UCH-1/proctitis]: L-rich region from 20 to 81 corrected with score 50
>CTRA-L2B-01-000731 	gi|166155580|ref|YP_001653835.1| transcription termination factor Rho [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 2 to 44 corrected with score 41
>CTRA-L2B-01-000744 	gi|166155593|ref|YP_001653848.1| hypothetical protein CTLon_0760 [Chlamydia trachomatis L2b/UCH-1/proctitis]: Q-rich region from 36 to 139 corrected with score 69
>CTRA-L2B-01-000745 	gi|166155594|ref|YP_001653849.1| hypothetical protein CTLon_0761 [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 138 to 288 corrected with score 66
>CTRA-L2B-01-000745 	gi|166155594|ref|YP_001653849.1| hypothetical protein CTLon_0761 [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 138 to 164 corrected with score 49
>CTRA-L2B-01-000749 	gi|166155598|ref|YP_001653853.1| 30S ribosomal protein S11 [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 48 to 107 corrected with score 43
>CTRA-L2B-01-000752 	gi|166155601|ref|YP_001653856.1| 50S ribosomal protein L15 [Chlamydia trachomatis L2b/UCH-1/proctitis]: G-rich region from 21 to 55 corrected with score 42
>CTRA-L2B-01-000770 	gi|166155619|ref|YP_001653874.1| hypothetical protein CTLon_0786 [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 43 to 238 corrected with score 48
>CTRA-L2B-01-000785 	gi|166155634|ref|YP_001653889.1| putative sugar phosphate permease [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 221 to 252 corrected with score 43
>CTRA-L2B-01-000800 	gi|166155649|ref|YP_001653904.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2b/UCH-1/proctitis]: E-rich region from 286 to 324 corrected with score 42
>CTRA-L2B-01-000803 	gi|166155652|ref|YP_001653907.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: L-rich region from 93 to 121 corrected with score 44
>CTRA-L2B-01-000803 	gi|166155652|ref|YP_001653907.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: M-rich region from 229 to 303 corrected with score 41
>CTRA-L2B-01-000805 	gi|166155654|ref|YP_001653909.1| type III secretion system, membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: M-rich region from 164 to 256 corrected with score 47
>CTRA-L2B-01-000813 	gi|166155662|ref|YP_001653917.1| general secretion pathway protein D [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 388 to 444 corrected with score 52
>CTRA-L2B-01-000817 	gi|166155666|ref|YP_001653921.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 177 to 232 corrected with score 58
>CTRA-L2B-01-000819 	gi|166155668|ref|YP_001653923.1| putative type III secretion system membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 308 corrected with score 124
>CTRA-L2B-01-000819 	gi|166155668|ref|YP_001653923.1| putative type III secretion system membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 278 to 487 corrected with score 83
>CTRA-L2B-01-000819 	gi|166155668|ref|YP_001653923.1| putative type III secretion system membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: T-rich region from 242 to 310 corrected with score 46
>CTRA-L2B-01-000820 	gi|166155669|ref|YP_001653924.1| putative type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 20 to 436 corrected with score 195
>CTRA-L2B-01-000820 	gi|166155669|ref|YP_001653924.1| putative type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: A-rich region from 231 to 313 corrected with score 58
>CTRA-L2B-01-000820 	gi|166155669|ref|YP_001653924.1| putative type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-L2B-01-000838 	gi|166155687|ref|YP_001653942.1| histone H1-I [Chlamydia trachomatis L2b/UCH-1/proctitis]: P-rich region from 47 to 101 corrected with score 60
>CTRA-L2B-01-000838 	gi|166155687|ref|YP_001653942.1| histone H1-I [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 30 to 115 corrected with score 42
>CTRA-L2B-01-000841 	gi|166155690|ref|YP_001653945.1| putative soluble transglycosylase [Chlamydia trachomatis L2b/UCH-1/proctitis]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-L2B-01-000857 	gi|166155706|ref|YP_001653961.1| putative integral membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis]: Q-rich region from 85 to 225 corrected with score 68
>CTRA-L2B-01-000858 	gi|166155707|ref|YP_001653962.1| 30S ribosomal protein S20 [Chlamydia trachomatis L2b/UCH-1/proctitis]: K-rich region from 4 to 45 corrected with score 47
>CTRA-L2B-01-000859 	gi|166155708|ref|YP_001653963.1| hypothetical protein CTLon_0876 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 16 to 83 corrected with score 44
>CTRA-L2B-01-000863 	gi|166155712|ref|YP_001653967.1| hypothetical protein CTLon_0880 [Chlamydia trachomatis L2b/UCH-1/proctitis]: S-rich region from 2 to 601 corrected with score 198
>CTRA-SWE-01-000000 	gi|289525920|emb|CBJ15403.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 107 to 780 corrected with score 120
>CTRA-SWE-01-000001 	gi|289525919|emb|CBJ15401.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 56 to 652 corrected with score 145
>CTRA-SWE-01-000002 	gi|289525918|emb|CBJ15400.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 105 to 615 corrected with score 69
>CTRA-SWE-01-000003 	gi|289525917|emb|CBJ15399.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 560 to 828 corrected with score 77
>CTRA-SWE-01-000003 	gi|289525917|emb|CBJ15399.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: T-rich region from 647 to 721 corrected with score 46
>CTRA-SWE-01-000004 	gi|289525916|emb|CBJ15398.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 343 to 599 corrected with score 50
>CTRA-SWE-01-000005 	gi|289525915|emb|CBJ15397.1| putative membrane protein [Chlamydia trachomatis Sweden2]: P-rich region from 74 to 143 corrected with score 150
>CTRA-SWE-01-000010 	gi|289525910|emb|CBJ15392.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 8 to 335 corrected with score 118
>CTRA-SWE-01-000010 	gi|289525910|emb|CBJ15392.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 235 to 283 corrected with score 49
>CTRA-SWE-01-000012 	gi|289525908|emb|CBJ15390.1| putative type III secretion translocator [Chlamydia trachomatis Sweden2]: S-rich region from 2 to 233 corrected with score 99
>CTRA-SWE-01-000013 	gi|289525907|emb|CBJ15389.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 12 to 280 corrected with score 93
>CTRA-SWE-01-000013 	gi|289525907|emb|CBJ15389.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 227 to 267 corrected with score 46
>CTRA-SWE-01-000023 	gi|289525897|emb|CBJ15379.1| putative integral membrane protein [Chlamydia trachomatis Sweden2]: E-rich region from 141 to 310 corrected with score 46
>CTRA-SWE-01-000025 	gi|289525895|emb|CBJ15377.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: Q-rich region from 46 to 139 corrected with score 46
>CTRA-SWE-01-000050 	gi|289525870|emb|CBJ15352.1| metalloprotease-insulinase [Chlamydia trachomatis Sweden2]: E-rich region from 468 to 508 corrected with score 42
>CTRA-SWE-01-000055 	gi|289525865|emb|CBJ15347.1| putative membrane transport protein [Chlamydia trachomatis Sweden2]: L-rich region from 141 to 186 corrected with score 50
>CTRA-SWE-01-000062 	gi|289525858|emb|CBJ15340.1| candidate inclusion membrane protein [Chlamydia trachomatis Sweden2]: E-rich region from 95 to 254 corrected with score 81
>CTRA-SWE-01-000063 	gi|289525857|emb|CBJ15339.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 121 to 671 corrected with score 60
>CTRA-SWE-01-000081 	gi|289525839|emb|CBJ15320.1| putative exported protein [Chlamydia trachomatis Sweden2]: A-rich region from 20 to 71 corrected with score 44
>CTRA-SWE-01-000089 	gi|289525831|emb|CBJ15312.1| SSU ribosomal protein S14P [Chlamydia trachomatis Sweden2]: K-rich region from 3 to 53 corrected with score 44
>CTRA-SWE-01-000091 	gi|289525829|emb|CBJ15310.1| ribonuclease P protein component [Chlamydia trachomatis Sweden2]: R-rich region from 2 to 40 corrected with score 41
>CTRA-SWE-01-000108 	gi|289525812|emb|CBJ15293.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 313 to 447 corrected with score 41
>CTRA-SWE-01-000126 	gi|289525794|emb|CBJ15275.1| transketolase [Chlamydia trachomatis Sweden2]: Q-rich region from 303 to 346 corrected with score 41
>CTRA-SWE-01-000133 	gi|289525787|emb|CBJ15268.1| histone H1--like developmental protein [Chlamydia trachomatis Sweden2]: K-rich region from 4 to 125 corrected with score 110
>CTRA-SWE-01-000165 	gi|289525755|emb|CBJ15236.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: Q-rich region from 709 to 744 corrected with score 43
>CTRA-SWE-01-000168 	gi|289525752|emb|CBJ15233.1| putative helicase [Chlamydia trachomatis Sweden2]: E-rich region from 103 to 140 corrected with score 41
>CTRA-SWE-01-000169 	gi|289525751|emb|CBJ15232.1| trigger factor (chaperone) [Chlamydia trachomatis Sweden2]: E-rich region from 255 to 361 corrected with score 46
>CTRA-SWE-01-000173 	gi|289525747|emb|CBJ15228.1| GTP-binding protein [Chlamydia trachomatis Sweden2]: E-rich region from 169 to 212 corrected with score 40
>CTRA-SWE-01-000181 	gi|289525739|emb|CBJ15220.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 2 to 77 corrected with score 41
>CTRA-SWE-01-000202 	gi|289525718|emb|CBJ15199.1| Type III secretion structural protein (outer membrane ring) [Chlamydia trachomatis Sweden2]: Q-rich region from 127 to 245 corrected with score 62
>CTRA-SWE-01-000205 	gi|289525715|emb|CBJ15196.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 37 to 124 corrected with score 45
>CTRA-SWE-01-000205 	gi|289525715|emb|CBJ15196.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 251 to 279 corrected with score 42
>CTRA-SWE-01-000206 	gi|289525714|emb|CBJ15195.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 13 to 168 corrected with score 114
>CTRA-SWE-01-000212 	gi|289525708|emb|CBJ15189.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis Sweden2]: E-rich region from 100 to 344 corrected with score 168
>CTRA-SWE-01-000212 	gi|289525708|emb|CBJ15189.1| phosphopeptide binding protein (predicted to be a TTSS protein) [Chlamydia trachomatis Sweden2]: S-rich region from 109 to 333 corrected with score 108
>CTRA-SWE-01-000215 	gi|289525705|emb|CBJ15186.1| DNA gyrase subunit B [Chlamydia trachomatis Sweden2]: K-rich region from 307 to 384 corrected with score 55
>CTRA-SWE-01-000234 	gi|289525686|emb|CBJ15167.1| DNA topoisomerase I [Chlamydia trachomatis Sweden2]: E-rich region from 437 to 474 corrected with score 49
>CTRA-SWE-01-000234 	gi|289525686|emb|CBJ15167.1| DNA topoisomerase I [Chlamydia trachomatis Sweden2]: K-rich region from 744 to 781 corrected with score 49
>CTRA-SWE-01-000235 	gi|289525685|emb|CBJ15166.1| putative membrane protein [Chlamydia trachomatis Sweden2]: F-rich region from 169 to 204 corrected with score 47
>CTRA-SWE-01-000242 	gi|289525678|emb|CBJ15159.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: K-rich region from 101 to 140 corrected with score 44
>CTRA-SWE-01-000255 	gi|289525665|emb|CBJ15146.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 2 to 603 corrected with score 204
>CTRA-SWE-01-000256 	gi|289525664|emb|CBJ15145.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: Q-rich region from 35 to 116 corrected with score 44
>CTRA-SWE-01-000259 	gi|289525661|emb|CBJ15142.1| putative membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 16 to 83 corrected with score 46
>CTRA-SWE-01-000260 	gi|289525660|emb|CBJ15141.1| SSU ribosomal protein S20P [Chlamydia trachomatis Sweden2]: K-rich region from 4 to 45 corrected with score 47
>CTRA-SWE-01-000261 	gi|289525659|emb|CBJ15140.1| putative integral membrane protein [Chlamydia trachomatis Sweden2]: Q-rich region from 85 to 225 corrected with score 68
>CTRA-SWE-01-000277 	gi|289525643|emb|CBJ15124.1| putative soluble transglycosylase [Chlamydia trachomatis Sweden2]: Q-rich region from 52 to 131 corrected with score 51
>CTRA-SWE-01-000280 	gi|289525640|emb|CBJ15121.1| histone H1-I [Chlamydia trachomatis Sweden2]: P-rich region from 47 to 106 corrected with score 61
>CTRA-SWE-01-000280 	gi|289525640|emb|CBJ15121.1| histone H1-I [Chlamydia trachomatis Sweden2]: K-rich region from 30 to 115 corrected with score 43
>CTRA-SWE-01-000296 	gi|289525624|emb|CBJ15102.1| putative type III secretion system protein [Chlamydia trachomatis Sweden2]: S-rich region from 20 to 436 corrected with score 196
>CTRA-SWE-01-000296 	gi|289525624|emb|CBJ15102.1| putative type III secretion system protein [Chlamydia trachomatis Sweden2]: A-rich region from 231 to 313 corrected with score 58
>CTRA-SWE-01-000296 	gi|289525624|emb|CBJ15102.1| putative type III secretion system protein [Chlamydia trachomatis Sweden2]: Q-rich region from 373 to 414 corrected with score 48
>CTRA-SWE-01-000296 	gi|289525624|emb|CBJ15102.1| putative type III secretion system protein [Chlamydia trachomatis Sweden2]: Q-rich region from 162 to 199 corrected with score 40
>CTRA-SWE-01-000297 	gi|289525623|emb|CBJ15101.1| putative type III secretion system membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 2 to 308 corrected with score 126
>CTRA-SWE-01-000297 	gi|289525623|emb|CBJ15101.1| putative type III secretion system membrane protein [Chlamydia trachomatis Sweden2]: A-rich region from 278 to 487 corrected with score 94
>CTRA-SWE-01-000299 	gi|289525621|emb|CBJ15099.1| type III secretion chaperone (low calcium response protein H) [Chlamydia trachomatis Sweden2]: K-rich region from 177 to 232 corrected with score 48
>CTRA-SWE-01-000303 	gi|289525617|emb|CBJ15095.1| general secretion pathway protein D [Chlamydia trachomatis Sweden2]: S-rich region from 388 to 444 corrected with score 54
>CTRA-SWE-01-000311 	gi|289525609|emb|CBJ15087.1| type III secretion system, membrane protein [Chlamydia trachomatis Sweden2]: M-rich region from 164 to 256 corrected with score 47
>CTRA-SWE-01-000313 	gi|289525607|emb|CBJ15085.1| type III secretion system, membrane protein [Chlamydia trachomatis Sweden2]: L-rich region from 93 to 121 corrected with score 44
>CTRA-SWE-01-000313 	gi|289525607|emb|CBJ15085.1| type III secretion system, membrane protein [Chlamydia trachomatis Sweden2]: M-rich region from 229 to 303 corrected with score 41
>CTRA-SWE-01-000316 	gi|289525604|emb|CBJ15082.1| type III secretion system protein, membrane component [Chlamydia trachomatis Sweden2]: E-rich region from 287 to 325 corrected with score 41
>CTRA-SWE-01-000331 	gi|289525589|emb|CBJ15067.1| putative sugar phosphate permease [Chlamydia trachomatis Sweden2]: E-rich region from 221 to 252 corrected with score 43
>CTRA-SWE-01-000346 	gi|289525574|emb|CBJ15052.1| putative membrane protein [Chlamydia trachomatis Sweden2]: A-rich region from 43 to 214 corrected with score 42
>CTRA-SWE-01-000364 	gi|289525556|emb|CBJ15034.1| LSU ribosomal protein L15P [Chlamydia trachomatis Sweden2]: G-rich region from 21 to 55 corrected with score 42
>CTRA-SWE-01-000367 	gi|289525553|emb|CBJ15031.1| SSU ribosomal protein S11P [Chlamydia trachomatis Sweden2]: A-rich region from 48 to 107 corrected with score 43
>CTRA-SWE-01-000371 	gi|289525549|emb|CBJ15027.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 138 to 288 corrected with score 66
>CTRA-SWE-01-000371 	gi|289525549|emb|CBJ15027.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: K-rich region from 138 to 164 corrected with score 49
>CTRA-SWE-01-000372 	gi|289525548|emb|CBJ15026.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: Q-rich region from 71 to 174 corrected with score 69
>CTRA-SWE-01-000385 	gi|289525535|emb|CBJ15013.1| transcription termination factor rho [Chlamydia trachomatis Sweden2]: E-rich region from 2 to 44 corrected with score 40
>CTRA-SWE-01-000392 	gi|289525528|emb|CBJ15006.1| putative membrane protein [Chlamydia trachomatis Sweden2]: L-rich region from 20 to 81 corrected with score 50
>CTRA-SWE-01-000416 	gi|289525504|emb|CBJ14981.1| bacterial peptide chain release factor 2 [Chlamydia trachomatis Sweden2]: E-rich region from 24 to 100 corrected with score 42
>CTRA-SWE-01-000419 	gi|289525501|emb|CBJ14978.1| Translocated actin-recruiting phosphoprotein [Chlamydia trachomatis Sweden2]: S-rich region from 2 to 796 corrected with score 345
>CTRA-SWE-01-000419 	gi|289525501|emb|CBJ14978.1| Translocated actin-recruiting phosphoprotein [Chlamydia trachomatis Sweden2]: T-rich region from 11 to 116 corrected with score 90
>CTRA-SWE-01-000419 	gi|289525501|emb|CBJ14978.1| Translocated actin-recruiting phosphoprotein [Chlamydia trachomatis Sweden2]: T-rich region from 487 to 532 corrected with score 55
>CTRA-SWE-01-000437 	gi|289525483|emb|CBJ14960.1| SSU ribosomal protein S12P [Chlamydia trachomatis Sweden2]: K-rich region from 15 to 57 corrected with score 42
>CTRA-SWE-01-000460 	gi|289525460|emb|CBJ14937.1| putative nucleotide-binding protein [Chlamydia trachomatis Sweden2]: G-rich region from 31 to 43 corrected with score 43
>CTRA-SWE-01-000461 	gi|289525459|emb|CBJ14936.1| metal transporter, membrane permease component [Chlamydia trachomatis Sweden2]: L-rich region from 186 to 273 corrected with score 56
>CTRA-SWE-01-000464 	gi|289525456|emb|CBJ14933.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 5 to 1367 corrected with score 528
>CTRA-SWE-01-000464 	gi|289525456|emb|CBJ14933.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: T-rich region from 1340 to 1364 corrected with score 53
>CTRA-SWE-01-000464 	gi|289525456|emb|CBJ14933.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: E-rich region from 625 to 733 corrected with score 49
>CTRA-SWE-01-000465 	gi|289525455|emb|CBJ14932.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 31 to 1336 corrected with score 503
>CTRA-SWE-01-000465 	gi|289525455|emb|CBJ14932.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: A-rich region from 801 to 841 corrected with score 51
>CTRA-SWE-01-000465 	gi|289525455|emb|CBJ14932.1| polymorphic outer membrane protein [Chlamydia trachomatis Sweden2]: T-rich region from 35 to 99 corrected with score 45
>CTRA-SWE-01-000480 	gi|289525440|emb|CBJ14917.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 25 to 174 corrected with score 66
>CTRA-SWE-01-000481 	gi|289525439|emb|CBJ14916.1| exoribonuclease II [Chlamydia trachomatis Sweden2]: K-rich region from 653 to 694 corrected with score 81
>CTRA-SWE-01-000482 	gi|289525438|emb|CBJ14915.1| chaperone protein [Chlamydia trachomatis Sweden2]: S-rich region from 575 to 647 corrected with score 56
>CTRA-SWE-01-000482 	gi|289525438|emb|CBJ14915.1| chaperone protein [Chlamydia trachomatis Sweden2]: E-rich region from 493 to 577 corrected with score 52
>CTRA-SWE-01-000483 	gi|289525437|emb|CBJ14914.1| HSP-70 Cofactor [Chlamydia trachomatis Sweden2]: Q-rich region from 8 to 67 corrected with score 40
>CTRA-SWE-01-000486 	gi|289525434|emb|CBJ14911.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 2 to 133 corrected with score 45
>CTRA-SWE-01-000500 	gi|289525420|emb|CBJ14897.1| putative nucleotide-binding protein [Chlamydia trachomatis Sweden2]: R-rich region from 193 to 225 corrected with score 42
>CTRA-SWE-01-000507 	gi|289525413|emb|CBJ14890.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: H-rich region from 5 to 20 corrected with score 48
>CTRA-SWE-01-000519 	gi|289525401|emb|CBJ14878.1| putative exported protein [Chlamydia trachomatis Sweden2]: E-rich region from 41 to 208 corrected with score 63
>CTRA-SWE-01-000521 	gi|289525399|emb|CBJ14876.1| putative inner membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 10 to 32 corrected with score 44
>CTRA-SWE-01-000527 	gi|289525393|emb|CBJ14870.1| preprotein translocase [Chlamydia trachomatis Sweden2]: L-rich region from 1 to 25 corrected with score 41
>CTRA-SWE-01-000538 	gi|289525382|emb|CBJ14859.1| heat shock chaperone protein [Chlamydia trachomatis Sweden2]: G-rich region from 67 to 134 corrected with score 74
>CTRA-SWE-01-000546 	gi|289525374|emb|CBJ14851.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis Sweden2]: S-rich region from 375 to 443 corrected with score 49
>CTRA-SWE-01-000547 	gi|289525373|emb|CBJ14850.1| excinuclease ABC subunit A [Chlamydia trachomatis Sweden2]: P-rich region from 918 to 934 corrected with score 40
>CTRA-SWE-01-000565 	gi|289525355|emb|CBJ14831.1| LSU ribosomal protein L12P (L7/L12) [Chlamydia trachomatis Sweden2]: A-rich region from 34 to 56 corrected with score 45
>CTRA-SWE-01-000571 	gi|289525349|emb|CBJ14825.1| V-type ATP synthase subunit E [Chlamydia trachomatis Sweden2]: E-rich region from 18 to 70 corrected with score 40
>CTRA-SWE-01-000592 	gi|289525328|emb|CBJ14804.1| putative membrane protein [Chlamydia trachomatis Sweden2]: K-rich region from 70 to 300 corrected with score 90
>CTRA-SWE-01-000592 	gi|289525328|emb|CBJ14804.1| putative membrane protein [Chlamydia trachomatis Sweden2]: A-rich region from 178 to 308 corrected with score 50
>CTRA-SWE-01-000593 	gi|289525327|emb|CBJ14803.1| candidate inclusion membrane protein [Chlamydia trachomatis Sweden2]: A-rich region from 32 to 93 corrected with score 54
>CTRA-SWE-01-000595 	gi|289525325|emb|CBJ14801.1| ATP-dependent Clp protease [Chlamydia trachomatis Sweden2]: E-rich region from 443 to 500 corrected with score 57
>CTRA-SWE-01-000595 	gi|289525325|emb|CBJ14801.1| ATP-dependent Clp protease [Chlamydia trachomatis Sweden2]: S-rich region from 153 to 171 corrected with score 44
>CTRA-SWE-01-000605 	gi|289525315|emb|CBJ14791.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 32 to 82 corrected with score 40
>CTRA-SWE-01-000651 	gi|289525269|emb|CBJ14745.1| putative sodium:dicarboxylate symport protein [Chlamydia trachomatis Sweden2]: L-rich region from 16 to 105 corrected with score 41
>CTRA-SWE-01-000652 	gi|289525268|emb|CBJ14744.1| candidate inclusion membrane protein [Chlamydia trachomatis Sweden2]: A-rich region from 8 to 74 corrected with score 40
>CTRA-SWE-01-000653 	gi|289525267|emb|CBJ14743.1| candidate inclusion membrane protein [Chlamydia trachomatis Sweden2]: V-rich region from 37 to 76 corrected with score 40
>CTRA-SWE-01-000658 	gi|289525262|emb|CBJ14738.1| candidate inclusion membrane protein [Chlamydia trachomatis Sweden2]: D-rich region from 248 to 262 corrected with score 41
>CTRA-SWE-01-000663 	gi|289525257|emb|CBJ14733.1| 4-hydroxybenzoate polyprenyltransferase [Chlamydia trachomatis Sweden2]: L-rich region from 90 to 162 corrected with score 44
>CTRA-SWE-01-000668 	gi|289525252|emb|CBJ14728.1| candidate inclusion membrane protein [Chlamydia trachomatis Sweden2]: V-rich region from 37 to 98 corrected with score 43
>CTRA-SWE-01-000708 	gi|289525212|emb|CBJ14688.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: K-rich region from 107 to 158 corrected with score 41
>CTRA-SWE-01-000716 	gi|289525204|emb|CBJ14680.1| putative cytoadherence factor (fragment) [Chlamydia trachomatis Sweden2]: K-rich region from 29 to 142 corrected with score 57
>CTRA-SWE-01-000717 	gi|289525203|emb|CBJ14679.1| putative cytoadherence factor (fragment) [Chlamydia trachomatis Sweden2]: P-rich region from 51 to 72 corrected with score 42
>CTRA-SWE-01-000717 	gi|289525203|emb|CBJ14679.1| putative cytoadherence factor (fragment) [Chlamydia trachomatis Sweden2]: T-rich region from 16 to 98 corrected with score 40
>CTRA-SWE-01-000718 	gi|289525202|emb|CBJ14678.1| putative membrane protein [Chlamydia trachomatis Sweden2]: L-rich region from 34 to 64 corrected with score 41
>CTRA-SWE-01-000723 	gi|289525197|emb|CBJ14672.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis Sweden2]: S-rich region from 2 to 100 corrected with score 59
>CTRA-SWE-01-000725 	gi|289525195|emb|CBJ14670.1| phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein [Chlamydia trachomatis Sweden2]: H-rich region from 4 to 30 corrected with score 46
>CTRA-SWE-01-000726 	gi|289525194|emb|CBJ14669.1| MAC/perforin family protein [Chlamydia trachomatis Sweden2]: S-rich region from 383 to 549 corrected with score 92
>CTRA-SWE-01-000732 	gi|289525188|emb|CBJ14663.1| putative integral membrane protein [Chlamydia trachomatis Sweden2]: Q-rich region from 961 to 1155 corrected with score 43
>CTRA-SWE-01-000735 	gi|289525185|emb|CBJ14660.1| putative membrane protein [Chlamydia trachomatis Sweden2]: T-rich region from 2 to 62 corrected with score 46
>CTRA-SWE-01-000752 	gi|289525168|emb|CBJ14642.1| SSU ribosomal protein S9P [Chlamydia trachomatis Sweden2]: K-rich region from 88 to 129 corrected with score 49
>CTRA-SWE-01-000759 	gi|289525161|emb|CBJ14634.1| inclusion membrane protein G [Chlamydia trachomatis Sweden2]: S-rich region from 89 to 166 corrected with score 53
>CTRA-SWE-01-000760 	gi|289525160|emb|CBJ14633.1| inclusion membrane protein F [Chlamydia trachomatis Sweden2]: A-rich region from 29 to 92 corrected with score 41
>CTRA-SWE-01-000764 	gi|289525156|emb|CBJ14629.1| chaperone-protease ClpB [Chlamydia trachomatis Sweden2]: E-rich region from 412 to 534 corrected with score 58
>CTRA-SWE-01-000772 	gi|289525148|emb|CBJ14621.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 2 to 229 corrected with score 104
>CTRA-SWE-01-000772 	gi|289525148|emb|CBJ14621.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: C-rich region from 308 to 350 corrected with score 47
>CTRA-SWE-01-000780 	gi|289525140|emb|CBJ14612.1| bacterial protein translation initiation factor 2 (IF-2) [Chlamydia trachomatis Sweden2]: S-rich region from 33 to 286 corrected with score 104
>CTRA-SWE-01-000780 	gi|289525140|emb|CBJ14612.1| bacterial protein translation initiation factor 2 (IF-2) [Chlamydia trachomatis Sweden2]: K-rich region from 2 to 57 corrected with score 43
>CTRA-SWE-01-000780 	gi|289525140|emb|CBJ14612.1| bacterial protein translation initiation factor 2 (IF-2) [Chlamydia trachomatis Sweden2]: E-rich region from 123 to 156 corrected with score 40
>CTRA-SWE-01-000786 	gi|289525134|emb|CBJ14606.1| low calcium response protein D (predicted to be part of the TTSS apparatus) [Chlamydia trachomatis Sweden2]: L-rich region from 27 to 91 corrected with score 51
>CTRA-SWE-01-000787 	gi|289525133|emb|CBJ14605.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis Sweden2]: E-rich region from 61 to 127 corrected with score 54
>CTRA-SWE-01-000787 	gi|289525133|emb|CBJ14605.1| low calcium response protein E (TTSS effector protein) [Chlamydia trachomatis Sweden2]: P-rich region from 385 to 421 corrected with score 47
>CTRA-SWE-01-000794 	gi|289525126|emb|CBJ14598.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 2 to 387 corrected with score 95
>CTRA-SWE-01-000805 	gi|289525115|emb|CBJ14586.1| ABC transport protein, membrane permease [Chlamydia trachomatis Sweden2]: V-rich region from 39 to 304 corrected with score 40
>CTRA-SWE-01-000810 	gi|289525110|emb|CBJ14581.1| ADP,ATP carrier protein [Chlamydia trachomatis Sweden2]: A-rich region from 435 to 523 corrected with score 50
>CTRA-SWE-01-000817 	gi|289525103|emb|CBJ14574.1| putative membrane protein [Chlamydia trachomatis Sweden2]: P-rich region from 78 to 119 corrected with score 66
>CTRA-SWE-01-000822 	gi|289525098|emb|CBJ14569.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 27 to 127 corrected with score 51
>CTRA-SWE-01-000824 	gi|289525096|emb|CBJ14567.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 214 to 519 corrected with score 139
>CTRA-SWE-01-000824 	gi|289525096|emb|CBJ14567.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: T-rich region from 377 to 501 corrected with score 73
>CTRA-SWE-01-000824 	gi|289525096|emb|CBJ14567.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: E-rich region from 113 to 155 corrected with score 55
>CTRA-SWE-01-000825 	gi|289525095|emb|CBJ14566.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: T-rich region from 79 to 557 corrected with score 185
>CTRA-SWE-01-000825 	gi|289525095|emb|CBJ14566.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 454 to 520 corrected with score 57
>CTRA-SWE-01-000825 	gi|289525095|emb|CBJ14566.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: P-rich region from 240 to 271 corrected with score 44
>CTRA-SWE-01-000826 	gi|289525094|emb|CBJ14565.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 170 to 481 corrected with score 93
>CTRA-SWE-01-000829 	gi|289525091|emb|CBJ14562.1| Histone H1-like protein HC2 [Chlamydia trachomatis Sweden2]: K-rich region from 7 to 122 corrected with score 102
>CTRA-SWE-01-000829 	gi|289525091|emb|CBJ14562.1| Histone H1-like protein HC2 [Chlamydia trachomatis Sweden2]: A-rich region from 14 to 142 corrected with score 89
>CTRA-SWE-01-000869 	gi|289525051|emb|CBJ14520.1| putative membrane protein [Chlamydia trachomatis Sweden2]: S-rich region from 232 to 361 corrected with score 138
>CTRA-SWE-01-000874 	gi|289525046|emb|CBJ14515.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]: S-rich region from 7 to 141 corrected with score 69
>PACA-HAL-01-000028 	gi|282892579|ref|ZP_06300852.1| hypothetical protein pah_c272o018 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 43 to 90 corrected with score 41
>PACA-HAL-01-000067 	gi|282892479|ref|ZP_06300813.1| hypothetical protein pah_c260o032 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 17 to 67 corrected with score 59
>PACA-HAL-01-000068 	gi|282892478|ref|ZP_06300812.1| hypothetical protein pah_c260o031 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 44 to 87 corrected with score 41
>PACA-HAL-01-000071 	gi|282892475|ref|ZP_06300809.1| hypothetical protein pah_c260o027 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 124 to 567 corrected with score 118
>PACA-HAL-01-000071 	gi|282892475|ref|ZP_06300809.1| hypothetical protein pah_c260o027 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 213 to 291 corrected with score 41
>PACA-HAL-01-000076 	gi|282892470|ref|ZP_06300804.1| hypothetical protein pah_c260o015 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 329 to 557 corrected with score 102
>PACA-HAL-01-000096 	gi|282892438|ref|ZP_06300784.1| hypothetical protein pah_c254o008 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 134 to 247 corrected with score 68
>PACA-HAL-01-000096 	gi|282892438|ref|ZP_06300784.1| hypothetical protein pah_c254o008 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 249 to 348 corrected with score 49
>PACA-HAL-01-000101 	gi|282892433|ref|ZP_06300779.1| hypothetical protein pah_c254o001 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 585 to 748 corrected with score 61
>PACA-HAL-01-000111 	gi|282892419|ref|ZP_06300769.1| hypothetical protein pah_c253o045 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 26 to 505 corrected with score 249
>PACA-HAL-01-000116 	gi|282892414|ref|ZP_06300764.1| hypothetical protein pah_c253o039 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 4 to 129 corrected with score 77
>PACA-HAL-01-000116 	gi|282892414|ref|ZP_06300764.1| hypothetical protein pah_c253o039 [Parachlamydia acanthamoebae str. Hall's coccus]: A-rich region from 64 to 132 corrected with score 62
>PACA-HAL-01-000123 	gi|282892407|ref|ZP_06300757.1| hypothetical protein pah_c253o030 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 274 to 430 corrected with score 116
>PACA-HAL-01-000123 	gi|282892407|ref|ZP_06300757.1| hypothetical protein pah_c253o030 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 26 to 121 corrected with score 45
>PACA-HAL-01-000125 	gi|282892405|ref|ZP_06300755.1| hypothetical protein pah_c253o024 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 126 to 536 corrected with score 124
>PACA-HAL-01-000125 	gi|282892405|ref|ZP_06300755.1| hypothetical protein pah_c253o024 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 132 to 323 corrected with score 89
>PACA-HAL-01-000127 	gi|282892403|ref|ZP_06300753.1| hypothetical protein pah_c253o022 [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 8 to 40 corrected with score 40
>PACA-HAL-01-000170 	gi|282892314|ref|ZP_06300710.1| hypothetical protein pah_c221o055 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 28 to 77 corrected with score 75
>PACA-HAL-01-000195 	gi|282892289|ref|ZP_06300685.1| hypothetical protein pah_c221o021 [Parachlamydia acanthamoebae str. Hall's coccus]: H-rich region from 71 to 81 corrected with score 41
>PACA-HAL-01-000198 	gi|282892286|ref|ZP_06300682.1| hypothetical protein pah_c221o017 [Parachlamydia acanthamoebae str. Hall's coccus]: L-rich region from 47 to 118 corrected with score 41
>PACA-HAL-01-000199 	gi|282892285|ref|ZP_06300681.1| hypothetical protein pah_c221o016 [Parachlamydia acanthamoebae str. Hall's coccus]: L-rich region from 159 to 247 corrected with score 45
>PACA-HAL-01-000201 	gi|282892283|ref|ZP_06300679.1| hypothetical protein pah_c221o013 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 35 to 151 corrected with score 51
>PACA-HAL-01-000212 	gi|282892197|ref|ZP_06300668.1| hypothetical protein pah_c212o022 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 11 to 64 corrected with score 49
>PACA-HAL-01-000216 	gi|282892193|ref|ZP_06300664.1| hypothetical protein pah_c212o017 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 427 to 441 corrected with score 42
>PACA-HAL-01-000218 	gi|282892191|ref|ZP_06300662.1| hypothetical protein pah_c212o014 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 331 to 374 corrected with score 41
>PACA-HAL-01-000228 	gi|282892181|ref|ZP_06300652.1| hypothetical protein pah_c212o004 [Parachlamydia acanthamoebae str. Hall's coccus]: N-rich region from 25 to 119 corrected with score 51
>PACA-HAL-01-000232 	gi|282892176|ref|ZP_06300648.1| hypothetical protein pah_c211o001 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 138 to 237 corrected with score 64
>PACA-HAL-01-000244 	gi|282892162|ref|ZP_06300636.1| hypothetical protein pah_c209o036 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 533 to 588 corrected with score 45
>PACA-HAL-01-000254 	gi|282892152|ref|ZP_06300626.1| hypothetical protein pah_c209o021 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 6 to 27 corrected with score 42
>PACA-HAL-01-000260 	gi|282892146|ref|ZP_06300620.1| hypothetical protein pah_c209o014 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 198 to 229 corrected with score 45
>PACA-HAL-01-000269 	gi|282892137|ref|ZP_06300611.1| hypothetical protein pah_c209o001 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 363 to 378 corrected with score 52
>PACA-HAL-01-000271 	gi|282892134|ref|ZP_06300609.1| hypothetical protein pah_c207o074 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 468 to 511 corrected with score 43
>PACA-HAL-01-000282 	gi|282892123|ref|ZP_06300598.1| hypothetical protein pah_c207o057 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 438 to 505 corrected with score 52
>PACA-HAL-01-000302 	gi|282892103|ref|ZP_06300578.1| hypothetical protein pah_c207o031 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 29 to 80 corrected with score 104
>PACA-HAL-01-000308 	gi|282892097|ref|ZP_06300572.1| hypothetical protein pah_c207o025 [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 387 to 590 corrected with score 44
>PACA-HAL-01-000331 	gi|282892072|ref|ZP_06300549.1| hypothetical protein pah_c205o112 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 11 to 26 corrected with score 41
>PACA-HAL-01-000336 	gi|282892067|ref|ZP_06300544.1| hypothetical protein pah_c205o105 [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 9 to 45 corrected with score 73
>PACA-HAL-01-000344 	gi|282892059|ref|ZP_06300536.1| hypothetical protein pah_c205o096 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 199 to 233 corrected with score 48
>PACA-HAL-01-000349 	gi|282892054|ref|ZP_06300531.1| hypothetical protein pah_c205o091 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 29 to 107 corrected with score 61
>PACA-HAL-01-000351 	gi|282892052|ref|ZP_06300529.1| hypothetical protein pah_c205o089 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 2500 to 2573 corrected with score 44
>PACA-HAL-01-000358 	gi|282892045|ref|ZP_06300522.1| hypothetical protein pah_c205o079 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 51 to 114 corrected with score 56
>PACA-HAL-01-000402 	gi|282892001|ref|ZP_06300478.1| putative type III secreted protein SctW [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 372 to 396 corrected with score 69
>PACA-HAL-01-000403 	gi|282892000|ref|ZP_06300477.1| type III secretion inner membrane protein SctV [Parachlamydia acanthamoebae str. Hall's coccus]: I-rich region from 30 to 144 corrected with score 48
>PACA-HAL-01-000408 	gi|282891995|ref|ZP_06300472.1| hypothetical protein pah_c205o008 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 112 to 130 corrected with score 46
>PACA-HAL-01-000408 	gi|282891995|ref|ZP_06300472.1| hypothetical protein pah_c205o008 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 218 to 248 corrected with score 41
>PACA-HAL-01-000409 	gi|282891994|ref|ZP_06300471.1| hypothetical protein pah_c205o006 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 219 to 254 corrected with score 47
>PACA-HAL-01-000428 	gi|282891973|ref|ZP_06300452.1| hypothetical protein pah_c200o153 [Parachlamydia acanthamoebae str. Hall's coccus]: A-rich region from 11 to 123 corrected with score 54
>PACA-HAL-01-000438 	gi|282891963|ref|ZP_06300442.1| hypothetical protein pah_c200o136 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 330 to 385 corrected with score 54
>PACA-HAL-01-000439 	gi|282891962|ref|ZP_06300441.1| hypothetical protein pah_c200o135 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 328 to 385 corrected with score 43
>PACA-HAL-01-000447 	gi|282891954|ref|ZP_06300433.1| hypothetical protein pah_c200o123 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 264 to 280 corrected with score 50
>PACA-HAL-01-000451 	gi|282891950|ref|ZP_06300429.1| hypothetical protein pah_c200o118 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 55 to 85 corrected with score 54
>PACA-HAL-01-000479 	gi|282891922|ref|ZP_06300401.1| hypothetical protein pah_c200o082 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 565 to 586 corrected with score 41
>PACA-HAL-01-000490 	gi|282891911|ref|ZP_06300390.1| hypothetical protein pah_c200o069 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 133 to 240 corrected with score 85
>PACA-HAL-01-000490 	gi|282891911|ref|ZP_06300390.1| hypothetical protein pah_c200o069 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 156 to 249 corrected with score 48
>PACA-HAL-01-000518 	gi|282891883|ref|ZP_06300362.1| hypothetical protein pah_c200o032 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 503 to 541 corrected with score 41
>PACA-HAL-01-000529 	gi|282891872|ref|ZP_06300351.1| hypothetical protein pah_c200o017 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 215 to 301 corrected with score 43
>PACA-HAL-01-000543 	gi|282891857|ref|ZP_06300337.1| hypothetical protein pah_c198o052 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 1262 to 1367 corrected with score 40
>PACA-HAL-01-000609 	gi|282891790|ref|ZP_06300271.1| hypothetical protein pah_c197o108 [Parachlamydia acanthamoebae str. Hall's coccus]: C-rich region from 99 to 124 corrected with score 44
>PACA-HAL-01-000612 	gi|282891787|ref|ZP_06300268.1| hypothetical protein pah_c197o105 [Parachlamydia acanthamoebae str. Hall's coccus]: C-rich region from 97 to 120 corrected with score 48
>PACA-HAL-01-000612 	gi|282891787|ref|ZP_06300268.1| hypothetical protein pah_c197o105 [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 114 to 146 corrected with score 40
>PACA-HAL-01-000629 	gi|282891770|ref|ZP_06300251.1| hypothetical protein pah_c197o082 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 75 to 146 corrected with score 40
>PACA-HAL-01-000631 	gi|282891768|ref|ZP_06300249.1| hypothetical protein pah_c197o080 [Parachlamydia acanthamoebae str. Hall's coccus]: L-rich region from 23 to 105 corrected with score 40
>PACA-HAL-01-000648 	gi|282891751|ref|ZP_06300232.1| hypothetical protein pah_c197o060 [Parachlamydia acanthamoebae str. Hall's coccus]: V-rich region from 342 to 499 corrected with score 58
>PACA-HAL-01-000656 	gi|282891743|ref|ZP_06300224.1| hypothetical protein pah_c197o050 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 51 to 99 corrected with score 48
>PACA-HAL-01-000657 	gi|282891742|ref|ZP_06300223.1| hypothetical protein pah_c197o049 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 20 to 66 corrected with score 45
>PACA-HAL-01-000657 	gi|282891742|ref|ZP_06300223.1| hypothetical protein pah_c197o049 [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 78 to 145 corrected with score 44
>PACA-HAL-01-000659 	gi|282891740|ref|ZP_06300221.1| hypothetical protein pah_c197o047 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 26 to 63 corrected with score 45
>PACA-HAL-01-000666 	gi|282891733|ref|ZP_06300214.1| ADP/ATP translocase [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 78 to 122 corrected with score 53
>PACA-HAL-01-000668 	gi|282891731|ref|ZP_06300212.1| hypothetical protein pah_c197o031 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 34 to 54 corrected with score 70
>PACA-HAL-01-000669 	gi|282891730|ref|ZP_06300211.1| hypothetical protein pah_c197o030 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 15 to 199 corrected with score 75
>PACA-HAL-01-000673 	gi|282891726|ref|ZP_06300207.1| hypothetical protein pah_c197o023 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 633 to 679 corrected with score 44
>PACA-HAL-01-000679 	gi|282891720|ref|ZP_06300201.1| hypothetical protein pah_c197o014 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 29 to 82 corrected with score 43
>PACA-HAL-01-000711 	gi|282891682|ref|ZP_06300169.1| hypothetical protein pah_c188o061 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 54 to 97 corrected with score 44
>PACA-HAL-01-000716 	gi|282891677|ref|ZP_06300164.1| hypothetical protein pah_c188o054 [Parachlamydia acanthamoebae str. Hall's coccus]: H-rich region from 269 to 280 corrected with score 40
>PACA-HAL-01-000727 	gi|282891666|ref|ZP_06300153.1| hypothetical protein pah_c188o041 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 171 to 355 corrected with score 53
>PACA-HAL-01-000754 	gi|282891639|ref|ZP_06300126.1| hypothetical protein pah_c188o003 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 380 to 422 corrected with score 60
>PACA-HAL-01-000760 	gi|282891632|ref|ZP_06300120.1| hypothetical protein pah_c187o003 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 25 to 174 corrected with score 63
>PACA-HAL-01-000787 	gi|282891602|ref|ZP_06300093.1| hypothetical protein pah_c180o095 [Parachlamydia acanthamoebae str. Hall's coccus]: V-rich region from 87 to 204 corrected with score 40
>PACA-HAL-01-000790 	gi|282891599|ref|ZP_06300090.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 369 to 374 corrected with score 42
>PACA-HAL-01-000795 	gi|282891594|ref|ZP_06300085.1| hypothetical protein pah_c180o085 [Parachlamydia acanthamoebae str. Hall's coccus]: H-rich region from 175 to 193 corrected with score 86
>PACA-HAL-01-000801 	gi|282891588|ref|ZP_06300079.1| hypothetical protein pah_c180o076 [Parachlamydia acanthamoebae str. Hall's coccus]: I-rich region from 3 to 81 corrected with score 54
>PACA-HAL-01-000841 	gi|282891548|ref|ZP_06300039.1| hypothetical protein pah_c180o026 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 746 to 786 corrected with score 59
>PACA-HAL-01-000851 	gi|282891538|ref|ZP_06300029.1| hypothetical protein pah_c180o012 [Parachlamydia acanthamoebae str. Hall's coccus]: L-rich region from 83 to 117 corrected with score 47
>PACA-HAL-01-000867 	gi|282891521|ref|ZP_06300013.1| hypothetical protein pah_c178o048 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 132 to 275 corrected with score 98
>PACA-HAL-01-000867 	gi|282891521|ref|ZP_06300013.1| hypothetical protein pah_c178o048 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 27 to 158 corrected with score 40
>PACA-HAL-01-000869 	gi|282891519|ref|ZP_06300011.1| hypothetical protein pah_c178o046 [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 16 to 33 corrected with score 45
>PACA-HAL-01-000892 	gi|282891496|ref|ZP_06299988.1| hypothetical protein pah_c178o011 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 23 to 187 corrected with score 248
>PACA-HAL-01-000910 	gi|282891475|ref|ZP_06299970.1| hypothetical protein pah_c173o034 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 19 to 46 corrected with score 48
>PACA-HAL-01-000937 	gi|282891448|ref|ZP_06299943.1| hypothetical protein pah_c173o001 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 245 to 337 corrected with score 57
>PACA-HAL-01-000953 	gi|282891428|ref|ZP_06299927.1| hypothetical protein pah_c161o047 [Parachlamydia acanthamoebae str. Hall's coccus]: Y-rich region from 53 to 116 corrected with score 120
>PACA-HAL-01-000954 	gi|282891427|ref|ZP_06299926.1| hypothetical protein pah_c161o046 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 40 to 103 corrected with score 197
>PACA-HAL-01-000954 	gi|282891427|ref|ZP_06299926.1| hypothetical protein pah_c161o046 [Parachlamydia acanthamoebae str. Hall's coccus]: Y-rich region from 94 to 140 corrected with score 91
>PACA-HAL-01-000967 	gi|282891414|ref|ZP_06299913.1| ADP/ATP translocase [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 97 to 116 corrected with score 46
>PACA-HAL-01-000979 	gi|282891402|ref|ZP_06299901.1| hypothetical protein pah_c161o009 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 2 to 72 corrected with score 52
>PACA-HAL-01-000983 	gi|282891398|ref|ZP_06299897.1| hypothetical protein pah_c161o004 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 14 to 59 corrected with score 49
>PACA-HAL-01-000984 	gi|282891397|ref|ZP_06299896.1| hypothetical protein pah_c161o003 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 95 to 130 corrected with score 57
>PACA-HAL-01-000986 	gi|282891395|ref|ZP_06299894.1| hypothetical protein pah_c161o001 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 135 to 325 corrected with score 204
>PACA-HAL-01-000987 	gi|282891393|ref|ZP_06299893.1| hypothetical protein pah_c056o013 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 26 to 126 corrected with score 45
>PACA-HAL-01-000989 	gi|282891391|ref|ZP_06299891.1| putative type III secretion chaperone SycD/LcrH [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 207 to 247 corrected with score 47
>PACA-HAL-01-000990 	gi|282891390|ref|ZP_06299890.1| putative type III secretion translocator protein CopB [Parachlamydia acanthamoebae str. Hall's coccus]: A-rich region from 558 to 795 corrected with score 63
>PACA-HAL-01-000990 	gi|282891390|ref|ZP_06299890.1| putative type III secretion translocator protein CopB [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 140 to 245 corrected with score 45
>PACA-HAL-01-000992 	gi|282891388|ref|ZP_06299888.1| hypothetical protein pah_c056o005 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 33 to 380 corrected with score 58
>PACA-HAL-01-000994 	gi|282891386|ref|ZP_06299886.1| hypothetical protein pah_c056o002 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 2 to 900 corrected with score 144
>PACA-HAL-01-001007 	gi|282891371|ref|ZP_06299873.1| hypothetical protein pah_c050o178 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 26 to 58 corrected with score 44
>PACA-HAL-01-001014 	gi|282891364|ref|ZP_06299866.1| hypothetical protein pah_c050o169 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 729 to 764 corrected with score 61
>PACA-HAL-01-001014 	gi|282891364|ref|ZP_06299866.1| hypothetical protein pah_c050o169 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 3 to 27 corrected with score 51
>PACA-HAL-01-001022 	gi|282891356|ref|ZP_06299858.1| putative 60 kDa cysteine-rich outer membrane protein [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 370 to 525 corrected with score 58
>PACA-HAL-01-001022 	gi|282891356|ref|ZP_06299858.1| putative 60 kDa cysteine-rich outer membrane protein [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 54 to 108 corrected with score 56
>PACA-HAL-01-001032 	gi|282891346|ref|ZP_06299848.1| hypothetical protein pah_c050o145 [Parachlamydia acanthamoebae str. Hall's coccus]: W-rich region from 113 to 118 corrected with score 40
>PACA-HAL-01-001039 	gi|282891339|ref|ZP_06299841.1| hypothetical protein pah_c050o133 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 33 to 151 corrected with score 48
>PACA-HAL-01-001042 	gi|282891336|ref|ZP_06299838.1| hypothetical protein pah_c050o130 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 210 to 329 corrected with score 44
>PACA-HAL-01-001045 	gi|282891333|ref|ZP_06299835.1| hypothetical protein pah_c050o124 [Parachlamydia acanthamoebae str. Hall's coccus]: D-rich region from 654 to 674 corrected with score 63
>PACA-HAL-01-001046 	gi|282891332|ref|ZP_06299834.1| hypothetical protein pah_c050o122 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 45 to 189 corrected with score 80
>PACA-HAL-01-001047 	gi|282891331|ref|ZP_06299833.1| hypothetical protein pah_c050o120 [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 75 to 164 corrected with score 43
>PACA-HAL-01-001053 	gi|282891325|ref|ZP_06299827.1| hypothetical protein pah_c050o113 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 151 to 223 corrected with score 44
>PACA-HAL-01-001066 	gi|282891312|ref|ZP_06299814.1| hypothetical protein pah_c050o095 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 359 to 389 corrected with score 45
>PACA-HAL-01-001069 	gi|282891309|ref|ZP_06299811.1| hypothetical protein pah_c050o088 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 103 to 144 corrected with score 43
>PACA-HAL-01-001071 	gi|282891307|ref|ZP_06299809.1| hypothetical protein pah_c050o085 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 264 to 361 corrected with score 48
>PACA-HAL-01-001077 	gi|282891301|ref|ZP_06299803.1| hypothetical protein pah_c050o078 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 216 to 268 corrected with score 42
>PACA-HAL-01-001091 	gi|282891287|ref|ZP_06299789.1| hypothetical protein pah_c050o060 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 155 to 259 corrected with score 65
>PACA-HAL-01-001109 	gi|282891269|ref|ZP_06299771.1| hypothetical protein pah_c050o038 [Parachlamydia acanthamoebae str. Hall's coccus]: V-rich region from 25 to 118 corrected with score 50
>PACA-HAL-01-001127 	gi|282891251|ref|ZP_06299753.1| conserved hypothetical protein [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 62 to 95 corrected with score 49
>PACA-HAL-01-001143 	gi|282891234|ref|ZP_06299737.1| hypothetical protein pah_c048o069 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 23 to 157 corrected with score 49
>PACA-HAL-01-001145 	gi|282891232|ref|ZP_06299735.1| hypothetical protein pah_c048o066 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 14 to 165 corrected with score 55
>PACA-HAL-01-001158 	gi|282891219|ref|ZP_06299722.1| hypothetical protein pah_c048o052 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 16 to 240 corrected with score 109
>PACA-HAL-01-001158 	gi|282891219|ref|ZP_06299722.1| hypothetical protein pah_c048o052 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 71 to 141 corrected with score 40
>PACA-HAL-01-001167 	gi|282891210|ref|ZP_06299713.1| hypothetical protein pah_c048o040 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 4 to 265 corrected with score 86
>PACA-HAL-01-001172 	gi|282891205|ref|ZP_06299708.1| hypothetical protein pah_c048o034 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 55 to 253 corrected with score 76
>PACA-HAL-01-001172 	gi|282891205|ref|ZP_06299708.1| hypothetical protein pah_c048o034 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 56 to 179 corrected with score 48
>PACA-HAL-01-001173 	gi|282891204|ref|ZP_06299707.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 293 to 318 corrected with score 51
>PACA-HAL-01-001176 	gi|282891201|ref|ZP_06299704.1| type III secretion inner membrane protein SctR [Parachlamydia acanthamoebae str. Hall's coccus]: L-rich region from 101 to 134 corrected with score 44
>PACA-HAL-01-001182 	gi|282891195|ref|ZP_06299698.1| hypothetical protein pah_c048o021 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 329 to 395 corrected with score 92
>PACA-HAL-01-001182 	gi|282891195|ref|ZP_06299698.1| hypothetical protein pah_c048o021 [Parachlamydia acanthamoebae str. Hall's coccus]: D-rich region from 311 to 327 corrected with score 65
>PACA-HAL-01-001188 	gi|282891189|ref|ZP_06299692.1| hypothetical protein pah_c048o015 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 34 to 79 corrected with score 87
>PACA-HAL-01-001219 	gi|282891157|ref|ZP_06299661.1| hypothetical protein pah_c047o065 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 137 to 206 corrected with score 54
>PACA-HAL-01-001220 	gi|282891156|ref|ZP_06299660.1| hypothetical protein pah_c047o064 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 387 to 434 corrected with score 49
>PACA-HAL-01-001226 	gi|282891150|ref|ZP_06299654.1| hypothetical protein pah_c047o055 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 96 to 192 corrected with score 75
>PACA-HAL-01-001228 	gi|282891148|ref|ZP_06299652.1| hypothetical protein pah_c047o052 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 48 to 132 corrected with score 80
>PACA-HAL-01-001228 	gi|282891148|ref|ZP_06299652.1| hypothetical protein pah_c047o052 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 8 to 31 corrected with score 45
>PACA-HAL-01-001241 	gi|282891135|ref|ZP_06299639.1| hypothetical protein pah_c047o030 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 3 to 87 corrected with score 42
>PACA-HAL-01-001244 	gi|282891132|ref|ZP_06299636.1| hypothetical protein pah_c047o027 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 43 to 171 corrected with score 145
>PACA-HAL-01-001248 	gi|282891128|ref|ZP_06299632.1| hypothetical protein pah_c047o022 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 105 to 227 corrected with score 50
>PACA-HAL-01-001253 	gi|282891123|ref|ZP_06299627.1| hypothetical protein pah_c047o017 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 246 to 307 corrected with score 42
>PACA-HAL-01-001260 	gi|282891116|ref|ZP_06299620.1| hypothetical protein pah_c047o001 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 27 to 205 corrected with score 108
>PACA-HAL-01-001261 	gi|282891114|ref|ZP_06299619.1| hypothetical protein pah_c045o150 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 534 to 615 corrected with score 83
>PACA-HAL-01-001261 	gi|282891114|ref|ZP_06299619.1| hypothetical protein pah_c045o150 [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 558 to 617 corrected with score 44
>PACA-HAL-01-001277 	gi|282891098|ref|ZP_06299603.1| hypothetical protein pah_c045o129 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 3 to 91 corrected with score 54
>PACA-HAL-01-001278 	gi|282891097|ref|ZP_06299602.1| Chaperone protein dnaK [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 486 to 659 corrected with score 70
>PACA-HAL-01-001280 	gi|282891095|ref|ZP_06299600.1| hypothetical protein pah_c045o125 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 93 to 383 corrected with score 205
>PACA-HAL-01-001280 	gi|282891095|ref|ZP_06299600.1| hypothetical protein pah_c045o125 [Parachlamydia acanthamoebae str. Hall's coccus]: R-rich region from 133 to 150 corrected with score 41
>PACA-HAL-01-001287 	gi|282891088|ref|ZP_06299593.1| hypothetical protein pah_c045o115 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 113 to 172 corrected with score 54
>PACA-HAL-01-001321 	gi|282891054|ref|ZP_06299559.1| hypothetical protein pah_c045o067 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 138 to 202 corrected with score 74
>PACA-HAL-01-001321 	gi|282891054|ref|ZP_06299559.1| hypothetical protein pah_c045o067 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 215 to 232 corrected with score 73
>PACA-HAL-01-001333 	gi|282891042|ref|ZP_06299547.1| hypothetical protein pah_c045o054 [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 255 to 281 corrected with score 44
>PACA-HAL-01-001338 	gi|282891037|ref|ZP_06299542.1| hypothetical protein pah_c045o046 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 258 to 303 corrected with score 44
>PACA-HAL-01-001338 	gi|282891037|ref|ZP_06299542.1| hypothetical protein pah_c045o046 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 201 to 272 corrected with score 40
>PACA-HAL-01-001344 	gi|282891031|ref|ZP_06299536.1| hypothetical protein pah_c045o038 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 4 to 29 corrected with score 40
>PACA-HAL-01-001348 	gi|282891027|ref|ZP_06299532.1| hypothetical protein pah_c045o033 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 31 to 43 corrected with score 43
>PACA-HAL-01-001365 	gi|282891010|ref|ZP_06299515.1| hypothetical protein pah_c045o010 [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 1 to 19 corrected with score 46
>PACA-HAL-01-001376 	gi|282890996|ref|ZP_06299504.1| hypothetical protein pah_c040o004 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 244 to 291 corrected with score 44
>PACA-HAL-01-001377 	gi|282890995|ref|ZP_06299503.1| hypothetical protein pah_c040o003 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 121 to 237 corrected with score 70
>PACA-HAL-01-001383 	gi|282890988|ref|ZP_06299497.1| hypothetical protein pah_c039o011 [Parachlamydia acanthamoebae str. Hall's coccus]: H-rich region from 39 to 95 corrected with score 175
>PACA-HAL-01-001383 	gi|282890988|ref|ZP_06299497.1| hypothetical protein pah_c039o011 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 38 to 110 corrected with score 102
>PACA-HAL-01-001383 	gi|282890988|ref|ZP_06299497.1| hypothetical protein pah_c039o011 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 157 to 185 corrected with score 64
>PACA-HAL-01-001416 	gi|282890950|ref|ZP_06299464.1| hypothetical protein pah_c032o031 [Parachlamydia acanthamoebae str. Hall's coccus]: I-rich region from 18 to 44 corrected with score 42
>PACA-HAL-01-001425 	gi|282890941|ref|ZP_06299455.1| hypothetical protein pah_c032o020 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 89 to 297 corrected with score 138
>PACA-HAL-01-001425 	gi|282890941|ref|ZP_06299455.1| hypothetical protein pah_c032o020 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 137 to 301 corrected with score 104
>PACA-HAL-01-001449 	gi|282890915|ref|ZP_06299431.1| hypothetical protein pah_c030o013 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 45 to 82 corrected with score 48
>PACA-HAL-01-001462 	gi|282890901|ref|ZP_06299418.1| hypothetical protein pah_c029o067 [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 110 to 176 corrected with score 46
>PACA-HAL-01-001472 	gi|282890891|ref|ZP_06299408.1| hypothetical protein pah_c029o055 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 8 to 55 corrected with score 44
>PACA-HAL-01-001472 	gi|282890891|ref|ZP_06299408.1| hypothetical protein pah_c029o055 [Parachlamydia acanthamoebae str. Hall's coccus]: V-rich region from 78 to 127 corrected with score 43
>PACA-HAL-01-001475 	gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 26 to 171 corrected with score 48
>PACA-HAL-01-001475 	gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 655 to 834 corrected with score 48
>PACA-HAL-01-001475 	gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 30 to 62 corrected with score 41
>PACA-HAL-01-001477 	gi|282890886|ref|ZP_06299403.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 59 to 167 corrected with score 44
>PACA-HAL-01-001477 	gi|282890886|ref|ZP_06299403.1| putative type III secretion protein SctC [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 785 to 835 corrected with score 43
>PACA-HAL-01-001479 	gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 279 to 388 corrected with score 215
>PACA-HAL-01-001480 	gi|282890883|ref|ZP_06299400.1| conserved hypothetical protein [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 33 to 150 corrected with score 50
>PACA-HAL-01-001481 	gi|282890882|ref|ZP_06299399.1| conserved hypothetical protein [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 13 to 151 corrected with score 72
>PACA-HAL-01-001487 	gi|282890876|ref|ZP_06299393.1| putative type III secretion system protein SctD [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 101 to 308 corrected with score 212
>PACA-HAL-01-001507 	gi|282890856|ref|ZP_06299373.1| hypothetical protein pah_c029o008 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 97 to 141 corrected with score 50
>PACA-HAL-01-001524 	gi|282890838|ref|ZP_06299356.1| hypothetical protein pah_c028o014 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 201 to 948 corrected with score 223
>PACA-HAL-01-001524 	gi|282890838|ref|ZP_06299356.1| hypothetical protein pah_c028o014 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 214 to 429 corrected with score 94
>PACA-HAL-01-001528 	gi|282890834|ref|ZP_06299352.1| hypothetical protein pah_c028o008 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 13 to 388 corrected with score 80
>PACA-HAL-01-001532 	gi|282890829|ref|ZP_06299348.1| hypothetical protein pah_c027o002 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 238 to 280 corrected with score 42
>PACA-HAL-01-001551 	gi|282890809|ref|ZP_06299329.1| hypothetical protein pah_c026o158 [Parachlamydia acanthamoebae str. Hall's coccus]: A-rich region from 86 to 242 corrected with score 49
>PACA-HAL-01-001553 	gi|282890807|ref|ZP_06299327.1| hypothetical protein pah_c026o156 [Parachlamydia acanthamoebae str. Hall's coccus]: M-rich region from 209 to 300 corrected with score 49
>PACA-HAL-01-001588 	gi|282890772|ref|ZP_06299292.1| hypothetical protein pah_c026o105 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 56 to 111 corrected with score 51
>PACA-HAL-01-001605 	gi|282890755|ref|ZP_06299275.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 167 to 196 corrected with score 46
>PACA-HAL-01-001611 	gi|282890749|ref|ZP_06299269.1| hypothetical protein pah_c026o079 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 62 to 236 corrected with score 224
>PACA-HAL-01-001611 	gi|282890749|ref|ZP_06299269.1| hypothetical protein pah_c026o079 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 85 to 190 corrected with score 42
>PACA-HAL-01-001618 	gi|282890742|ref|ZP_06299262.1| hypothetical protein pah_c026o070 [Parachlamydia acanthamoebae str. Hall's coccus]: A-rich region from 46 to 165 corrected with score 47
>PACA-HAL-01-001622 	gi|282890738|ref|ZP_06299258.1| hypothetical protein pah_c026o065 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 171 to 317 corrected with score 43
>PACA-HAL-01-001624 	gi|282890736|ref|ZP_06299256.1| hypothetical protein pah_c026o063 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 162 to 184 corrected with score 45
>PACA-HAL-01-001654 	gi|282890706|ref|ZP_06299226.1| hypothetical protein pah_c026o020 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 908 to 1007 corrected with score 49
>PACA-HAL-01-001669 	gi|282890691|ref|ZP_06299211.1| hypothetical protein pah_c026o001 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 31 to 124 corrected with score 52
>PACA-HAL-01-001671 	gi|282890688|ref|ZP_06299209.1| hypothetical protein pah_c024o002 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 699 to 742 corrected with score 43
>PACA-HAL-01-001674 	gi|282890684|ref|ZP_06299206.1| hypothetical protein pah_c023o020 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 575 to 639 corrected with score 58
>PACA-HAL-01-001675 	gi|282890683|ref|ZP_06299205.1| hypothetical protein pah_c023o018 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 586 to 639 corrected with score 52
>PACA-HAL-01-001675 	gi|282890683|ref|ZP_06299205.1| hypothetical protein pah_c023o018 [Parachlamydia acanthamoebae str. Hall's coccus]: V-rich region from 441 to 484 corrected with score 48
>PACA-HAL-01-001684 	gi|282890674|ref|ZP_06299196.1| hypothetical protein pah_c023o003 [Parachlamydia acanthamoebae str. Hall's coccus]: L-rich region from 142 to 242 corrected with score 62
>PACA-HAL-01-001697 	gi|282890660|ref|ZP_06299183.1| hypothetical protein pah_c022o287 [Parachlamydia acanthamoebae str. Hall's coccus]: M-rich region from 249 to 328 corrected with score 49
>PACA-HAL-01-001701 	gi|282890656|ref|ZP_06299179.1| hypothetical protein pah_c022o280 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 22 to 189 corrected with score 189
>PACA-HAL-01-001704 	gi|282890653|ref|ZP_06299176.1| hypothetical protein pah_c022o276 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 31 to 155 corrected with score 89
>PACA-HAL-01-001711 	gi|282890646|ref|ZP_06299169.1| hypothetical protein pah_c022o269 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 76 to 171 corrected with score 43
>PACA-HAL-01-001732 	gi|282890625|ref|ZP_06299148.1| hypothetical protein pah_c022o234 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 325 to 367 corrected with score 47
>PACA-HAL-01-001735 	gi|282890622|ref|ZP_06299145.1| hypothetical protein pah_c022o231 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 116 to 170 corrected with score 40
>PACA-HAL-01-001741 	gi|282890616|ref|ZP_06299139.1| hypothetical protein pah_c022o223 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 3 to 60 corrected with score 40
>PACA-HAL-01-001751 	gi|282890606|ref|ZP_06299129.1| hypothetical protein pah_c022o209 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 979 to 1020 corrected with score 42
>PACA-HAL-01-001763 	gi|282890594|ref|ZP_06299117.1| hypothetical protein pah_c022o192 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 32 to 109 corrected with score 68
>PACA-HAL-01-001763 	gi|282890594|ref|ZP_06299117.1| hypothetical protein pah_c022o192 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 30 to 56 corrected with score 41
>PACA-HAL-01-001764 	gi|282890593|ref|ZP_06299116.1| hypothetical protein pah_c022o191 [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 51 to 80 corrected with score 44
>PACA-HAL-01-001766 	gi|282890591|ref|ZP_06299114.1| hypothetical protein pah_c022o188 [Parachlamydia acanthamoebae str. Hall's coccus]: V-rich region from 1 to 43 corrected with score 51
>PACA-HAL-01-001772 	gi|282890585|ref|ZP_06299108.1| hypothetical protein pah_c022o182 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 538 to 596 corrected with score 50
>PACA-HAL-01-001775 	gi|282890582|ref|ZP_06299105.1| hypothetical protein pah_c022o178 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 20 to 56 corrected with score 43
>PACA-HAL-01-001831 	gi|282890526|ref|ZP_06299049.1| hypothetical protein pah_c022o112 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 13 to 78 corrected with score 59
>PACA-HAL-01-001831 	gi|282890526|ref|ZP_06299049.1| hypothetical protein pah_c022o112 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 323 to 561 corrected with score 58
>PACA-HAL-01-001845 	gi|282890512|ref|ZP_06299035.1| hypothetical protein pah_c022o093 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 98 to 114 corrected with score 42
>PACA-HAL-01-001849 	gi|282890508|ref|ZP_06299031.1| hypothetical protein pah_c022o089 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 72 to 127 corrected with score 52
>PACA-HAL-01-001849 	gi|282890508|ref|ZP_06299031.1| hypothetical protein pah_c022o089 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 22 to 174 corrected with score 44
>PACA-HAL-01-001859 	gi|282890498|ref|ZP_06299021.1| hypothetical protein pah_c022o075 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 47 to 80 corrected with score 53
>PACA-HAL-01-001859 	gi|282890498|ref|ZP_06299021.1| hypothetical protein pah_c022o075 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 19 to 45 corrected with score 47
>PACA-HAL-01-001890 	gi|282890467|ref|ZP_06298990.1| hypothetical protein pah_c022o034 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 356 to 518 corrected with score 44
>PACA-HAL-01-001918 	gi|282890435|ref|ZP_06298962.1| hypothetical protein pah_c017o020 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 388 to 519 corrected with score 44
>PACA-HAL-01-001920 	gi|282890433|ref|ZP_06298960.1| hypothetical protein pah_c017o017 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 62 to 291 corrected with score 44
>PACA-HAL-01-001932 	gi|282890421|ref|ZP_06298948.1| hypothetical protein pah_c017o001 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 57 to 101 corrected with score 94
>PACA-HAL-01-001938 	gi|282890414|ref|ZP_06298942.1| hypothetical protein pah_c016o161 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 32 to 78 corrected with score 51
>PACA-HAL-01-001943 	gi|282890409|ref|ZP_06298937.1| ribosome recycling factor [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 108 to 179 corrected with score 48
>PACA-HAL-01-001989 	gi|282890363|ref|ZP_06298891.1| hypothetical protein pah_c016o085 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 142 to 216 corrected with score 54
>PACA-HAL-01-002014 	gi|282890338|ref|ZP_06298866.1| hypothetical protein pah_c016o046 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 440 to 506 corrected with score 41
>PACA-HAL-01-002027 	gi|282890325|ref|ZP_06298853.1| hypothetical protein pah_c016o027 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 72 to 189 corrected with score 81
>PACA-HAL-01-002031 	gi|282890321|ref|ZP_06298849.1| hypothetical protein pah_c016o023 [Parachlamydia acanthamoebae str. Hall's coccus]: M-rich region from 501 to 544 corrected with score 40
>PACA-HAL-01-002037 	gi|282890315|ref|ZP_06298843.1| hypothetical protein pah_c016o013 [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 42 to 93 corrected with score 56
>PACA-HAL-01-002048 	gi|282890303|ref|ZP_06298832.1| hypothetical protein pah_c015o006 [Parachlamydia acanthamoebae str. Hall's coccus]: H-rich region from 41 to 57 corrected with score 83
>PACA-HAL-01-002058 	gi|282890292|ref|ZP_06298822.1| hypothetical protein pah_c014o188 [Parachlamydia acanthamoebae str. Hall's coccus]: I-rich region from 325 to 407 corrected with score 69
>PACA-HAL-01-002071 	gi|282890279|ref|ZP_06298809.1| Chaperonin GroEL [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 538 to 558 corrected with score 63
>PACA-HAL-01-002071 	gi|282890279|ref|ZP_06298809.1| Chaperonin GroEL [Parachlamydia acanthamoebae str. Hall's coccus]: A-rich region from 371 to 520 corrected with score 40
>PACA-HAL-01-002087 	gi|282890263|ref|ZP_06298793.1| hypothetical protein pah_c014o148 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 303 to 598 corrected with score 53
>PACA-HAL-01-002107 	gi|282890243|ref|ZP_06298773.1| hypothetical protein pah_c014o123 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 62 to 298 corrected with score 91
>PACA-HAL-01-002107 	gi|282890243|ref|ZP_06298773.1| hypothetical protein pah_c014o123 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 348 to 399 corrected with score 51
>PACA-HAL-01-002107 	gi|282890243|ref|ZP_06298773.1| hypothetical protein pah_c014o123 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 82 to 112 corrected with score 46
>PACA-HAL-01-002107 	gi|282890243|ref|ZP_06298773.1| hypothetical protein pah_c014o123 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 59 to 211 corrected with score 40
>PACA-HAL-01-002116 	gi|282890234|ref|ZP_06298764.1| hypothetical protein pah_c014o112 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 88 to 111 corrected with score 42
>PACA-HAL-01-002163 	gi|282890187|ref|ZP_06298717.1| hypothetical protein pah_c014o042 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 253 to 308 corrected with score 51
>PACA-HAL-01-002164 	gi|282890186|ref|ZP_06298716.1| hypothetical protein pah_c014o040 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 288 to 330 corrected with score 48
>PACA-HAL-01-002169 	gi|282890181|ref|ZP_06298711.1| hypothetical protein pah_c014o033 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 142 to 155 corrected with score 47
>PACA-HAL-01-002171 	gi|282890179|ref|ZP_06298709.1| hypothetical protein pah_c014o031 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 585 to 622 corrected with score 40
>PACA-HAL-01-002189 	gi|282890161|ref|ZP_06298691.1| hypothetical protein pah_c014o006 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 148 to 180 corrected with score 46
>PACA-HAL-01-002245 	gi|282890104|ref|ZP_06298635.1| hypothetical protein pah_c013o002 [Parachlamydia acanthamoebae str. Hall's coccus]: H-rich region from 33 to 80 corrected with score 77
>PACA-HAL-01-002269 	gi|282890078|ref|ZP_06298611.1| hypothetical protein pah_c010o073 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 22 to 419 corrected with score 145
>PACA-HAL-01-002269 	gi|282890078|ref|ZP_06298611.1| hypothetical protein pah_c010o073 [Parachlamydia acanthamoebae str. Hall's coccus]: T-rich region from 170 to 262 corrected with score 40
>PACA-HAL-01-002277 	gi|282890070|ref|ZP_06298603.1| hypothetical protein pah_c010o064 [Parachlamydia acanthamoebae str. Hall's coccus]: G-rich region from 86 to 123 corrected with score 59
>PACA-HAL-01-002280 	gi|282890067|ref|ZP_06298600.1| hypothetical protein pah_c010o060 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 59 to 142 corrected with score 42
>PACA-HAL-01-002323 	gi|282890023|ref|ZP_06298557.1| hypothetical protein pah_c009o047 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 22 to 71 corrected with score 58
>PACA-HAL-01-002323 	gi|282890023|ref|ZP_06298557.1| hypothetical protein pah_c009o047 [Parachlamydia acanthamoebae str. Hall's coccus]: R-rich region from 48 to 86 corrected with score 42
>PACA-HAL-01-002328 	gi|282890018|ref|ZP_06298552.1| hypothetical protein pah_c009o041 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 165 to 211 corrected with score 46
>PACA-HAL-01-002333 	gi|282890013|ref|ZP_06298547.1| hypothetical protein pah_c009o032 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 440 to 489 corrected with score 65
>PACA-HAL-01-002357 	gi|282889988|ref|ZP_06298523.1| hypothetical protein pah_c008o091 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 2837 to 2865 corrected with score 45
>PACA-HAL-01-002357 	gi|282889988|ref|ZP_06298523.1| hypothetical protein pah_c008o091 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 1714 to 1770 corrected with score 41
>PACA-HAL-01-002369 	gi|282889976|ref|ZP_06298511.1| hypothetical protein pah_c008o072 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 651 to 670 corrected with score 87
>PACA-HAL-01-002375 	gi|282889970|ref|ZP_06298505.1| hypothetical protein pah_c008o062 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 23 to 101 corrected with score 60
>PACA-HAL-01-002376 	gi|282889969|ref|ZP_06298504.1| hypothetical protein pah_c008o060 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 231 to 275 corrected with score 40
>PACA-HAL-01-002378 	gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 832 to 865 corrected with score 64
>PACA-HAL-01-002379 	gi|282889966|ref|ZP_06298501.1| hypothetical protein pah_c008o056 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 656 to 688 corrected with score 42
>PACA-HAL-01-002388 	gi|282889957|ref|ZP_06298492.1| hypothetical protein pah_c008o046 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 2 to 138 corrected with score 84
>PACA-HAL-01-002406 	gi|282889939|ref|ZP_06298474.1| hypothetical protein pah_c008o025 [Parachlamydia acanthamoebae str. Hall's coccus]: L-rich region from 110 to 219 corrected with score 58
>PACA-HAL-01-002414 	gi|282889931|ref|ZP_06298466.1| hypothetical protein pah_c008o013 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 65 to 1278 corrected with score 458
>PACA-HAL-01-002416 	gi|282889929|ref|ZP_06298464.1| hypothetical protein pah_c008o010 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 104 to 241 corrected with score 75
>PACA-HAL-01-002427 	gi|282889916|ref|ZP_06298453.1| hypothetical protein pah_c006o001 [Parachlamydia acanthamoebae str. Hall's coccus]: A-rich region from 4 to 90 corrected with score 58
>PACA-HAL-01-002438 	gi|282889904|ref|ZP_06298442.1| hypothetical protein pah_c005o042 [Parachlamydia acanthamoebae str. Hall's coccus]: I-rich region from 253 to 314 corrected with score 40
>PACA-HAL-01-002444 	gi|282889898|ref|ZP_06298436.1| hypothetical protein pah_c005o033 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 173 to 226 corrected with score 43
>PACA-HAL-01-002447 	gi|282889895|ref|ZP_06298433.1| hypothetical protein pah_c005o030 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 15 to 136 corrected with score 56
>PACA-HAL-01-002456 	gi|282889886|ref|ZP_06298424.1| hypothetical protein pah_c005o019 [Parachlamydia acanthamoebae str. Hall's coccus]: L-rich region from 299 to 470 corrected with score 48
>PACA-HAL-01-002471 	gi|282889870|ref|ZP_06298409.1| hypothetical protein pah_c004o295 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 16 to 40 corrected with score 40
>PACA-HAL-01-002481 	gi|282889860|ref|ZP_06298399.1| hypothetical protein pah_c004o280 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 18 to 138 corrected with score 50
>PACA-HAL-01-002483 	gi|282889858|ref|ZP_06298397.1| hypothetical protein pah_c004o276 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 206 to 413 corrected with score 199
>PACA-HAL-01-002483 	gi|282889858|ref|ZP_06298397.1| hypothetical protein pah_c004o276 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 414 to 501 corrected with score 107
>PACA-HAL-01-002483 	gi|282889858|ref|ZP_06298397.1| hypothetical protein pah_c004o276 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 324 to 354 corrected with score 44
>PACA-HAL-01-002491 	gi|282889850|ref|ZP_06298389.1| hypothetical protein pah_c004o264 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 455 to 520 corrected with score 45
>PACA-HAL-01-002492 	gi|282889849|ref|ZP_06298388.1| hypothetical protein pah_c004o263 [Parachlamydia acanthamoebae str. Hall's coccus]: D-rich region from 214 to 381 corrected with score 83
>PACA-HAL-01-002505 	gi|282889836|ref|ZP_06298375.1| hypothetical protein pah_c004o245 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 96 to 147 corrected with score 63
>PACA-HAL-01-002505 	gi|282889836|ref|ZP_06298375.1| hypothetical protein pah_c004o245 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 67 to 182 corrected with score 44
>PACA-HAL-01-002507 	gi|282889834|ref|ZP_06298373.1| hypothetical protein pah_c004o242 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 441 to 489 corrected with score 89
>PACA-HAL-01-002507 	gi|282889834|ref|ZP_06298373.1| hypothetical protein pah_c004o242 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 480 to 521 corrected with score 73
>PACA-HAL-01-002516 	gi|282889825|ref|ZP_06298364.1| hypothetical protein pah_c004o229 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 505 to 559 corrected with score 46
>PACA-HAL-01-002532 	gi|282889809|ref|ZP_06298348.1| hypothetical protein pah_c004o202 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 3 to 53 corrected with score 45
>PACA-HAL-01-002550 	gi|282889791|ref|ZP_06298330.1| hypothetical protein pah_c004o176 [Parachlamydia acanthamoebae str. Hall's coccus]: D-rich region from 135 to 161 corrected with score 100
>PACA-HAL-01-002552 	gi|282889789|ref|ZP_06298328.1| hypothetical protein pah_c004o173 [Parachlamydia acanthamoebae str. Hall's coccus]: S-rich region from 2 to 213 corrected with score 109
>PACA-HAL-01-002559 	gi|282889782|ref|ZP_06298321.1| hypothetical protein pah_c004o163 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 25 to 76 corrected with score 55
>PACA-HAL-01-002561 	gi|282889780|ref|ZP_06298319.1| hypothetical protein pah_c004o159 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 56 to 88 corrected with score 53
>PACA-HAL-01-002572 	gi|282889769|ref|ZP_06298308.1| hypothetical protein pah_c004o142 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 96 to 132 corrected with score 40
>PACA-HAL-01-002573 	gi|282889768|ref|ZP_06298307.1| hypothetical protein pah_c004o141 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 30 to 318 corrected with score 123
>PACA-HAL-01-002573 	gi|282889768|ref|ZP_06298307.1| hypothetical protein pah_c004o141 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 173 to 228 corrected with score 65
>PACA-HAL-01-002576 	gi|282889765|ref|ZP_06298304.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 546 to 572 corrected with score 43
>PACA-HAL-01-002589 	gi|282889752|ref|ZP_06298291.1| hypothetical protein pah_c004o120 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 647 to 685 corrected with score 40
>PACA-HAL-01-002592 	gi|282889749|ref|ZP_06298288.1| hypothetical protein pah_c004o115 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 40 to 150 corrected with score 79
>PACA-HAL-01-002593 	gi|282889748|ref|ZP_06298287.1| hypothetical protein pah_c004o114 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 135 to 716 corrected with score 144
>PACA-HAL-01-002600 	gi|282889741|ref|ZP_06298280.1| 50S ribosomal protein L7/L12 [Parachlamydia acanthamoebae str. Hall's coccus]: A-rich region from 35 to 57 corrected with score 57
>PACA-HAL-01-002624 	gi|282889717|ref|ZP_06298256.1| hypothetical protein pah_c004o068 [Parachlamydia acanthamoebae str. Hall's coccus]: L-rich region from 556 to 619 corrected with score 43
>PACA-HAL-01-002626 	gi|282889715|ref|ZP_06298254.1| hypothetical protein pah_c004o065 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 3 to 87 corrected with score 51
>PACA-HAL-01-002658 	gi|282889683|ref|ZP_06298222.1| hypothetical protein pah_c004o023 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 224 to 281 corrected with score 46
>PACA-HAL-01-002661 	gi|282889680|ref|ZP_06298219.1| hypothetical protein pah_c004o018 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 968 to 992 corrected with score 46
>PACA-HAL-01-002665 	gi|282889676|ref|ZP_06298215.1| hypothetical protein pah_c004o013 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 352 to 396 corrected with score 40
>PACA-HAL-01-002676 	gi|282889665|ref|ZP_06298204.1| hypothetical protein pah_c004o002 [Parachlamydia acanthamoebae str. Hall's coccus]: M-rich region from 65 to 133 corrected with score 41
>PACA-HAL-01-002689 	gi|282889651|ref|ZP_06298191.1| hypothetical protein pah_c003o043 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 16 to 46 corrected with score 41
>PACA-HAL-01-002698 	gi|282889642|ref|ZP_06298182.1| hypothetical protein pah_c003o029 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 22 to 74 corrected with score 48
>PACA-HAL-01-002704 	gi|282889636|ref|ZP_06298176.1| hypothetical protein pah_c003o023 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 282 to 362 corrected with score 47
>PACA-HAL-01-002704 	gi|282889636|ref|ZP_06298176.1| hypothetical protein pah_c003o023 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 51 to 200 corrected with score 40
>PACA-HAL-01-002705 	gi|282889635|ref|ZP_06298175.1| hypothetical protein pah_c003o022 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 248 to 316 corrected with score 49
>PACA-HAL-01-002706 	gi|282889634|ref|ZP_06298174.1| hypothetical protein pah_c003o021 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 89 to 180 corrected with score 40
>PACA-HAL-01-002726 	gi|282889613|ref|ZP_06298154.1| hypothetical protein pah_c002o064 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 127 to 155 corrected with score 43
>PACA-HAL-01-002733 	gi|282889606|ref|ZP_06298147.1| hypothetical protein pah_c002o054 [Parachlamydia acanthamoebae str. Hall's coccus]: N-rich region from 152 to 183 corrected with score 40
>PACA-HAL-01-002740 	gi|282889599|ref|ZP_06298140.1| hypothetical protein pah_c002o047 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 3 to 82 corrected with score 64
>PACA-HAL-01-002749 	gi|282889590|ref|ZP_06298131.1| hypothetical protein pah_c002o034 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 10 to 161 corrected with score 92
>PACA-HAL-01-002769 	gi|282889570|ref|ZP_06298111.1| hypothetical protein pah_c002o002 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 3298 to 3332 corrected with score 130
>PACA-HAL-01-002769 	gi|282889570|ref|ZP_06298111.1| hypothetical protein pah_c002o002 [Parachlamydia acanthamoebae str. Hall's coccus]: K-rich region from 1448 to 1496 corrected with score 43
>PACA-HAL-01-002779 	gi|282889559|ref|ZP_06298101.1| hypothetical protein pah_c001o038 [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 387 to 462 corrected with score 41
>PACA-HAL-01-002787 	gi|282889551|ref|ZP_06298093.1| hypothetical protein pah_c001o027 [Parachlamydia acanthamoebae str. Hall's coccus]: Q-rich region from 3104 to 3211 corrected with score 94
>PACA-HAL-01-002787 	gi|282889551|ref|ZP_06298093.1| hypothetical protein pah_c001o027 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 3104 to 3154 corrected with score 43
>PACA-HAL-01-002787 	gi|282889551|ref|ZP_06298093.1| hypothetical protein pah_c001o027 [Parachlamydia acanthamoebae str. Hall's coccus]: E-rich region from 1704 to 1766 corrected with score 40
>PACA-HAL-01-002802 	gi|282889536|ref|ZP_06298078.1| hypothetical protein pah_c001o008 [Parachlamydia acanthamoebae str. Hall's coccus]: P-rich region from 56 to 65 corrected with score 46
>PACA-HAL-01-002802 	gi|282889536|ref|ZP_06298078.1| hypothetical protein pah_c001o008 [Parachlamydia acanthamoebae str. Hall's coccus]: F-rich region from 3 to 21 corrected with score 43
>PACA-UV7-01-000037 	gi|338176745|ref|YP_004653555.1| hypothetical protein PUV_27510 [Parachlamydia acanthamoebae UV7]: Q-rich region from 440 to 506 corrected with score 41
>PACA-UV7-01-000047 	gi|338176735|ref|YP_004653545.1| hypothetical protein PUV_27410 [Parachlamydia acanthamoebae UV7]: K-rich region from 72 to 189 corrected with score 81
>PACA-UV7-01-000050 	gi|338176732|ref|YP_004653542.1| hypothetical protein PUV_27380 [Parachlamydia acanthamoebae UV7]: M-rich region from 501 to 544 corrected with score 40
>PACA-UV7-01-000056 	gi|338176726|ref|YP_004653536.1| hypothetical protein PUV_27320 [Parachlamydia acanthamoebae UV7]: F-rich region from 42 to 93 corrected with score 56
>PACA-UV7-01-000095 	gi|338176687|ref|YP_004653497.1| ribosomal large subunit pseudouridine synthase A [Parachlamydia acanthamoebae UV7]: H-rich region from 109 to 124 corrected with score 41
>PACA-UV7-01-000102 	gi|338176680|ref|YP_004653490.1| hypothetical protein PUV_26860 [Parachlamydia acanthamoebae UV7]: K-rich region from 6 to 81 corrected with score 45
>PACA-UV7-01-000114 	gi|338176668|ref|YP_004653478.1| hypothetical protein PUV_26740 [Parachlamydia acanthamoebae UV7]: H-rich region from 33 to 80 corrected with score 77
>PACA-UV7-01-000121 	gi|338176661|ref|YP_004653471.1| hypothetical protein PUV_26670 [Parachlamydia acanthamoebae UV7]: E-rich region from 1262 to 1367 corrected with score 40
>PACA-UV7-01-000169 	gi|338176613|ref|YP_004653423.1| sensor protein kdpD [Parachlamydia acanthamoebae UV7]: F-rich region from 387 to 462 corrected with score 41
>PACA-UV7-01-000178 	gi|338176604|ref|YP_004653414.1| hypothetical protein PUV_26100 [Parachlamydia acanthamoebae UV7]: Q-rich region from 3104 to 3211 corrected with score 94
>PACA-UV7-01-000178 	gi|338176604|ref|YP_004653414.1| hypothetical protein PUV_26100 [Parachlamydia acanthamoebae UV7]: E-rich region from 3104 to 3154 corrected with score 43
>PACA-UV7-01-000178 	gi|338176604|ref|YP_004653414.1| hypothetical protein PUV_26100 [Parachlamydia acanthamoebae UV7]: E-rich region from 1704 to 1766 corrected with score 40
>PACA-UV7-01-000193 	gi|338176589|ref|YP_004653399.1| hypothetical protein PUV_25950 [Parachlamydia acanthamoebae UV7]: P-rich region from 56 to 65 corrected with score 46
>PACA-UV7-01-000193 	gi|338176589|ref|YP_004653399.1| hypothetical protein PUV_25950 [Parachlamydia acanthamoebae UV7]: F-rich region from 3 to 21 corrected with score 43
>PACA-UV7-01-000211 	gi|338176571|ref|YP_004653381.1| hypothetical protein PUV_25770 [Parachlamydia acanthamoebae UV7]: K-rich region from 533 to 588 corrected with score 45
>PACA-UV7-01-000219 	gi|338176563|ref|YP_004653373.1| hypothetical protein PUV_25690 [Parachlamydia acanthamoebae UV7]: P-rich region from 6 to 27 corrected with score 42
>PACA-UV7-01-000225 	gi|338176557|ref|YP_004653367.1| hypothetical protein PUV_25630 [Parachlamydia acanthamoebae UV7]: K-rich region from 198 to 229 corrected with score 46
>PACA-UV7-01-000234 	gi|338176548|ref|YP_004653358.1| hypothetical protein PUV_25540 [Parachlamydia acanthamoebae UV7]: G-rich region from 390 to 705 corrected with score 292
>PACA-UV7-01-000234 	gi|338176548|ref|YP_004653358.1| hypothetical protein PUV_25540 [Parachlamydia acanthamoebae UV7]: T-rich region from 398 to 821 corrected with score 372
>PACA-UV7-01-000234 	gi|338176548|ref|YP_004653358.1| hypothetical protein PUV_25540 [Parachlamydia acanthamoebae UV7]: P-rich region from 386 to 401 corrected with score 51
>PACA-UV7-01-000244 	gi|338176538|ref|YP_004653348.1| hypothetical protein PUV_25440 [Parachlamydia acanthamoebae UV7]: Q-rich region from 26 to 505 corrected with score 246
>PACA-UV7-01-000249 	gi|338176533|ref|YP_004653343.1| histone-like developmental protein [Parachlamydia acanthamoebae UV7]: K-rich region from 4 to 129 corrected with score 77
>PACA-UV7-01-000249 	gi|338176533|ref|YP_004653343.1| histone-like developmental protein [Parachlamydia acanthamoebae UV7]: A-rich region from 64 to 132 corrected with score 62
>PACA-UV7-01-000254 	gi|338176528|ref|YP_004653338.1| hypothetical protein PUV_25340 [Parachlamydia acanthamoebae UV7]: S-rich region from 286 to 442 corrected with score 116
>PACA-UV7-01-000254 	gi|338176528|ref|YP_004653338.1| hypothetical protein PUV_25340 [Parachlamydia acanthamoebae UV7]: K-rich region from 38 to 133 corrected with score 45
>PACA-UV7-01-000256 	gi|338176526|ref|YP_004653336.1| hypothetical protein PUV_25320 [Parachlamydia acanthamoebae UV7]: S-rich region from 126 to 536 corrected with score 124
>PACA-UV7-01-000256 	gi|338176526|ref|YP_004653336.1| hypothetical protein PUV_25320 [Parachlamydia acanthamoebae UV7]: E-rich region from 132 to 323 corrected with score 89
>PACA-UV7-01-000258 	gi|338176524|ref|YP_004653334.1| hypothetical protein PUV_25300 [Parachlamydia acanthamoebae UV7]: F-rich region from 8 to 40 corrected with score 40
>PACA-UV7-01-000277 	gi|338176505|ref|YP_004653315.1| putative metal transport system membrane protein CPn_0543/CP_0209/CPj0543/CpB0565 [Parachlamydia acanthamoebae UV7]: L-rich region from 142 to 242 corrected with score 62
>PACA-UV7-01-000287 	gi|338176495|ref|YP_004653305.1| hypothetical protein PUV_25010 [Parachlamydia acanthamoebae UV7]: K-rich region from 586 to 639 corrected with score 52
>PACA-UV7-01-000287 	gi|338176495|ref|YP_004653305.1| hypothetical protein PUV_25010 [Parachlamydia acanthamoebae UV7]: V-rich region from 441 to 484 corrected with score 48
>PACA-UV7-01-000288 	gi|338176494|ref|YP_004653304.1| hypothetical protein PUV_25000 [Parachlamydia acanthamoebae UV7]: K-rich region from 575 to 639 corrected with score 58
>PACA-UV7-01-000301 	gi|338176481|ref|YP_004653291.1| hypothetical protein PUV_24870 [Parachlamydia acanthamoebae UV7]: Y-rich region from 53 to 116 corrected with score 120
>PACA-UV7-01-000302 	gi|338176480|ref|YP_004653290.1| hypothetical protein PUV_24860 [Parachlamydia acanthamoebae UV7]: G-rich region from 28 to 90 corrected with score 191
>PACA-UV7-01-000302 	gi|338176480|ref|YP_004653290.1| hypothetical protein PUV_24860 [Parachlamydia acanthamoebae UV7]: Y-rich region from 81 to 127 corrected with score 91
>PACA-UV7-01-000316 	gi|338176466|ref|YP_004653276.1| ADP,ATP carrier protein 1 [Parachlamydia acanthamoebae UV7]: F-rich region from 97 to 116 corrected with score 46
>PACA-UV7-01-000327 	gi|338176455|ref|YP_004653265.1| putative ribosome biogenesis GTPase RsgA [Parachlamydia acanthamoebae UV7]: K-rich region from 2 to 72 corrected with score 52
>PACA-UV7-01-000331 	gi|338176451|ref|YP_004653261.1| 30S ribosomal protein S21 [Parachlamydia acanthamoebae UV7]: K-rich region from 14 to 59 corrected with score 49
>PACA-UV7-01-000332 	gi|338176450|ref|YP_004653260.1| chaperone protein dnaJ [Parachlamydia acanthamoebae UV7]: G-rich region from 95 to 130 corrected with score 57
>PACA-UV7-01-000334 	gi|338176448|ref|YP_004653258.1| hypothetical protein PUV_24540 [Parachlamydia acanthamoebae UV7]: E-rich region from 134 to 545 corrected with score 409
>PACA-UV7-01-000334 	gi|338176448|ref|YP_004653258.1| hypothetical protein PUV_24540 [Parachlamydia acanthamoebae UV7]: A-rich region from 334 to 445 corrected with score 41
>PACA-UV7-01-000335 	gi|338176447|ref|YP_004653257.1| hypothetical protein PUV_24530 [Parachlamydia acanthamoebae UV7]: E-rich region from 9 to 132 corrected with score 84
>PACA-UV7-01-000342 	gi|338176440|ref|YP_004653250.1| RNA polymerase sigma factor rpoD [Parachlamydia acanthamoebae UV7]: K-rich region from 246 to 307 corrected with score 42
>PACA-UV7-01-000347 	gi|338176435|ref|YP_004653245.1| hypothetical protein PUV_24410 [Parachlamydia acanthamoebae UV7]: E-rich region from 105 to 227 corrected with score 50
>PACA-UV7-01-000349 	gi|338176433|ref|YP_004653243.1| hypothetical protein PUV_24390 [Parachlamydia acanthamoebae UV7]: G-rich region from 93 to 221 corrected with score 148
>PACA-UV7-01-000351 	gi|338176431|ref|YP_004653241.1| 30S ribosomal protein S20 [Parachlamydia acanthamoebae UV7]: K-rich region from 3 to 87 corrected with score 42
>PACA-UV7-01-000363 	gi|338176419|ref|YP_004653229.1| RNA polymerase sigma-54 factor [Parachlamydia acanthamoebae UV7]: E-rich region from 48 to 132 corrected with score 80
>PACA-UV7-01-000363 	gi|338176419|ref|YP_004653229.1| RNA polymerase sigma-54 factor [Parachlamydia acanthamoebae UV7]: Q-rich region from 8 to 31 corrected with score 45
>PACA-UV7-01-000365 	gi|338176417|ref|YP_004653227.1| hypothetical protein PUV_24230 [Parachlamydia acanthamoebae UV7]: E-rich region from 96 to 192 corrected with score 79
>PACA-UV7-01-000371 	gi|338176411|ref|YP_004653221.1| DNA polymerase III subunit gamma/tau [Parachlamydia acanthamoebae UV7]: P-rich region from 387 to 434 corrected with score 49
>PACA-UV7-01-000372 	gi|338176410|ref|YP_004653220.1| hypothetical protein PUV_24160 [Parachlamydia acanthamoebae UV7]: E-rich region from 137 to 206 corrected with score 54
>PACA-UV7-01-000397 	gi|338176385|ref|YP_004653195.1| hypothetical protein PUV_23910 [Parachlamydia acanthamoebae UV7]: E-rich region from 25 to 74 corrected with score 81
>PACA-UV7-01-000423 	gi|338176359|ref|YP_004653169.1| hypothetical protein PUV_23650 [Parachlamydia acanthamoebae UV7]: H-rich region from 71 to 81 corrected with score 41
>PACA-UV7-01-000426 	gi|338176356|ref|YP_004653166.1| hypothetical protein PUV_23620 [Parachlamydia acanthamoebae UV7]: L-rich region from 47 to 118 corrected with score 41
>PACA-UV7-01-000427 	gi|338176355|ref|YP_004653165.1| ATP synthase subunit a [Parachlamydia acanthamoebae UV7]: L-rich region from 159 to 247 corrected with score 45
>PACA-UV7-01-000429 	gi|338176353|ref|YP_004653163.1| ATP synthase subunit b [Parachlamydia acanthamoebae UV7]: E-rich region from 35 to 151 corrected with score 51
>PACA-UV7-01-000461 	gi|338176321|ref|YP_004653131.1| hypothetical protein PUV_23270 [Parachlamydia acanthamoebae UV7]: A-rich region from 11 to 123 corrected with score 54
>PACA-UV7-01-000472 	gi|338176310|ref|YP_004653120.1| hypothetical protein PUV_23160 [Parachlamydia acanthamoebae UV7]: K-rich region from 330 to 385 corrected with score 54
>PACA-UV7-01-000473 	gi|338176309|ref|YP_004653119.1| hypothetical protein PUV_23150 [Parachlamydia acanthamoebae UV7]: K-rich region from 326 to 383 corrected with score 43
>PACA-UV7-01-000482 	gi|338176300|ref|YP_004653110.1| acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamineO-acyltransferase [Parachlamydia acanthamoebae UV7]: E-rich region from 264 to 280 corrected with score 50
>PACA-UV7-01-000486 	gi|338176296|ref|YP_004653106.1| hypothetical protein PUV_23020 [Parachlamydia acanthamoebae UV7]: K-rich region from 58 to 93 corrected with score 50
>PACA-UV7-01-000515 	gi|338176267|ref|YP_004653077.1| elongation factor 4 [Parachlamydia acanthamoebae UV7]: K-rich region from 565 to 586 corrected with score 41
>PACA-UV7-01-000525 	gi|338176257|ref|YP_004653067.1| hypothetical protein PUV_22630 [Parachlamydia acanthamoebae UV7]: E-rich region from 133 to 212 corrected with score 57
>PACA-UV7-01-000552 	gi|338176230|ref|YP_004653040.1| hypothetical protein PUV_22360 [Parachlamydia acanthamoebae UV7]: E-rich region from 503 to 541 corrected with score 41
>PACA-UV7-01-000563 	gi|338176219|ref|YP_004653029.1| hypothetical protein PUV_22250 [Parachlamydia acanthamoebae UV7]: K-rich region from 215 to 301 corrected with score 43
>PACA-UV7-01-000609 	gi|338176173|ref|YP_004652983.1| hypothetical protein PUV_21790 [Parachlamydia acanthamoebae UV7]: S-rich region from 43 to 90 corrected with score 41
>PACA-UV7-01-000649 	gi|338176133|ref|YP_004652943.1| hypothetical protein PUV_21390 [Parachlamydia acanthamoebae UV7]: C-rich region from 99 to 124 corrected with score 44
>PACA-UV7-01-000651 	gi|338176131|ref|YP_004652941.1| hypothetical protein PUV_21370 [Parachlamydia acanthamoebae UV7]: C-rich region from 96 to 119 corrected with score 48
>PACA-UV7-01-000651 	gi|338176131|ref|YP_004652941.1| hypothetical protein PUV_21370 [Parachlamydia acanthamoebae UV7]: T-rich region from 113 to 145 corrected with score 40
>PACA-UV7-01-000667 	gi|338176115|ref|YP_004652925.1| hypothetical protein PUV_21210 [Parachlamydia acanthamoebae UV7]: K-rich region from 75 to 146 corrected with score 40
>PACA-UV7-01-000669 	gi|338176113|ref|YP_004652923.1| putative cadmium-transporting ATPase [Parachlamydia acanthamoebae UV7]: L-rich region from 23 to 105 corrected with score 40
>PACA-UV7-01-000685 	gi|338176097|ref|YP_004652907.1| efflux pump membrane transporter BepE [Parachlamydia acanthamoebae UV7]: V-rich region from 342 to 499 corrected with score 58
>PACA-UV7-01-000692 	gi|338176090|ref|YP_004652900.1| hypothetical protein PUV_20960 [Parachlamydia acanthamoebae UV7]: G-rich region from 37 to 85 corrected with score 49
>PACA-UV7-01-000693 	gi|338176089|ref|YP_004652899.1| hypothetical protein PUV_20950 [Parachlamydia acanthamoebae UV7]: T-rich region from 91 to 158 corrected with score 44
>PACA-UV7-01-000693 	gi|338176089|ref|YP_004652899.1| hypothetical protein PUV_20950 [Parachlamydia acanthamoebae UV7]: G-rich region from 33 to 79 corrected with score 43
>PACA-UV7-01-000695 	gi|338176087|ref|YP_004652897.1| hypothetical protein PUV_20930 [Parachlamydia acanthamoebae UV7]: P-rich region from 26 to 63 corrected with score 45
>PACA-UV7-01-000702 	gi|338176080|ref|YP_004652890.1| ADP,ATP carrier protein 1 [Parachlamydia acanthamoebae UV7]: F-rich region from 78 to 122 corrected with score 53
>PACA-UV7-01-000704 	gi|338176078|ref|YP_004652888.1| hypothetical protein PUV_20840 [Parachlamydia acanthamoebae UV7]: P-rich region from 34 to 54 corrected with score 70
>PACA-UV7-01-000705 	gi|338176077|ref|YP_004652887.1| hypothetical protein PUV_20830 [Parachlamydia acanthamoebae UV7]: Q-rich region from 26 to 210 corrected with score 75
>PACA-UV7-01-000708 	gi|338176074|ref|YP_004652884.1| hypothetical protein PUV_20800 [Parachlamydia acanthamoebae UV7]: Q-rich region from 633 to 679 corrected with score 44
>PACA-UV7-01-000714 	gi|338176068|ref|YP_004652878.1| hypothetical protein PUV_20740 [Parachlamydia acanthamoebae UV7]: E-rich region from 29 to 82 corrected with score 43
>PACA-UV7-01-000730 	gi|338176052|ref|YP_004652862.1| hypothetical protein PUV_20580 [Parachlamydia acanthamoebae UV7]: M-rich region from 65 to 133 corrected with score 41
>PACA-UV7-01-000741 	gi|338176041|ref|YP_004652851.1| DNA topoisomerase 4 subunit B [Parachlamydia acanthamoebae UV7]: K-rich region from 352 to 396 corrected with score 40
>PACA-UV7-01-000746 	gi|338176036|ref|YP_004652846.1| UvrABC system protein A [Parachlamydia acanthamoebae UV7]: K-rich region from 968 to 992 corrected with score 46
>PACA-UV7-01-000748 	gi|338176034|ref|YP_004652844.1| hypothetical protein PUV_20400 [Parachlamydia acanthamoebae UV7]: E-rich region from 224 to 281 corrected with score 46
>PACA-UV7-01-000778 	gi|338176004|ref|YP_004652814.1| hypothetical protein PUV_20100 [Parachlamydia acanthamoebae UV7]: K-rich region from 3 to 87 corrected with score 51
>PACA-UV7-01-000781 	gi|338176001|ref|YP_004652811.1| hypothetical protein PUV_20070 [Parachlamydia acanthamoebae UV7]: L-rich region from 556 to 619 corrected with score 43
>PACA-UV7-01-000806 	gi|338175976|ref|YP_004652786.1| 50S ribosomal protein L7/L12 [Parachlamydia acanthamoebae UV7]: A-rich region from 35 to 57 corrected with score 57
>PACA-UV7-01-000812 	gi|338175970|ref|YP_004652780.1| hypothetical protein PUV_19760 [Parachlamydia acanthamoebae UV7]: Q-rich region from 135 to 716 corrected with score 144
>PACA-UV7-01-000813 	gi|338175969|ref|YP_004652779.1| chaperone protein ClpB [Parachlamydia acanthamoebae UV7]: E-rich region from 426 to 536 corrected with score 79
>PACA-UV7-01-000815 	gi|338175967|ref|YP_004652777.1| hypothetical protein PUV_19730 [Parachlamydia acanthamoebae UV7]: Q-rich region from 647 to 685 corrected with score 40
>PACA-UV7-01-000827 	gi|338175955|ref|YP_004652765.1| hypothetical protein PUV_19610 [Parachlamydia acanthamoebae UV7]: K-rich region from 3 to 29 corrected with score 41
>PACA-UV7-01-000828 	gi|338175954|ref|YP_004652764.1| 30S ribosomal protein S1 [Parachlamydia acanthamoebae UV7]: E-rich region from 564 to 590 corrected with score 43
>PACA-UV7-01-000831 	gi|338175951|ref|YP_004652761.1| translation initiation factor IF-2 [Parachlamydia acanthamoebae UV7]: E-rich region from 30 to 318 corrected with score 123
>PACA-UV7-01-000831 	gi|338175951|ref|YP_004652761.1| translation initiation factor IF-2 [Parachlamydia acanthamoebae UV7]: P-rich region from 173 to 228 corrected with score 65
>PACA-UV7-01-000832 	gi|338175950|ref|YP_004652760.1| ribosome-binding factor A [Parachlamydia acanthamoebae UV7]: E-rich region from 96 to 132 corrected with score 40
>PACA-UV7-01-000844 	gi|338175938|ref|YP_004652748.1| hypothetical protein PUV_19440 [Parachlamydia acanthamoebae UV7]: E-rich region from 56 to 88 corrected with score 53
>PACA-UV7-01-000846 	gi|338175936|ref|YP_004652746.1| hypothetical protein PUV_19420 [Parachlamydia acanthamoebae UV7]: E-rich region from 24 to 75 corrected with score 55
>PACA-UV7-01-000855 	gi|338175927|ref|YP_004652737.1| hypothetical protein PUV_19330 [Parachlamydia acanthamoebae UV7]: S-rich region from 2 to 174 corrected with score 91
>PACA-UV7-01-000857 	gi|338175925|ref|YP_004652735.1| hypothetical protein PUV_19310 [Parachlamydia acanthamoebae UV7]: D-rich region from 149 to 178 corrected with score 118
>PACA-UV7-01-000875 	gi|338175907|ref|YP_004652717.1| 30S ribosomal protein S14 [Parachlamydia acanthamoebae UV7]: K-rich region from 3 to 53 corrected with score 45
>PACA-UV7-01-000892 	gi|338175890|ref|YP_004652700.1| uncharacterized ABC transporter ATP-binding protein YfmR [Parachlamydia acanthamoebae UV7]: K-rich region from 505 to 559 corrected with score 47
>PACA-UV7-01-000902 	gi|338175880|ref|YP_004652690.1| hypothetical protein PUV_18860 [Parachlamydia acanthamoebae UV7]: E-rich region from 441 to 489 corrected with score 89
>PACA-UV7-01-000902 	gi|338175880|ref|YP_004652690.1| hypothetical protein PUV_18860 [Parachlamydia acanthamoebae UV7]: P-rich region from 480 to 521 corrected with score 73
>PACA-UV7-01-000904 	gi|338175878|ref|YP_004652688.1| hypothetical protein PUV_18840 [Parachlamydia acanthamoebae UV7]: P-rich region from 96 to 147 corrected with score 62
>PACA-UV7-01-000904 	gi|338175878|ref|YP_004652688.1| hypothetical protein PUV_18840 [Parachlamydia acanthamoebae UV7]: T-rich region from 101 to 181 corrected with score 41
>PACA-UV7-01-000916 	gi|338175866|ref|YP_004652676.1| hypothetical protein PUV_18720 [Parachlamydia acanthamoebae UV7]: D-rich region from 211 to 378 corrected with score 83
>PACA-UV7-01-000918 	gi|338175864|ref|YP_004652674.1| hypothetical protein PUV_18700 [Parachlamydia acanthamoebae UV7]: E-rich region from 455 to 520 corrected with score 45
>PACA-UV7-01-000927 	gi|338175855|ref|YP_004652665.1| hypothetical protein PUV_18610 [Parachlamydia acanthamoebae UV7]: S-rich region from 157 to 364 corrected with score 199
>PACA-UV7-01-000927 	gi|338175855|ref|YP_004652665.1| hypothetical protein PUV_18610 [Parachlamydia acanthamoebae UV7]: P-rich region from 365 to 452 corrected with score 107
>PACA-UV7-01-000927 	gi|338175855|ref|YP_004652665.1| hypothetical protein PUV_18610 [Parachlamydia acanthamoebae UV7]: E-rich region from 275 to 305 corrected with score 44
>PACA-UV7-01-000929 	gi|338175853|ref|YP_004652663.1| hypothetical protein PUV_18590 [Parachlamydia acanthamoebae UV7]: K-rich region from 18 to 138 corrected with score 50
>PACA-UV7-01-000939 	gi|338175843|ref|YP_004652653.1| hypothetical protein PUV_18490 [Parachlamydia acanthamoebae UV7]: K-rich region from 16 to 40 corrected with score 40
>PACA-UV7-01-000947 	gi|338175835|ref|YP_004652645.1| hypothetical protein PUV_18410 [Parachlamydia acanthamoebae UV7]: K-rich region from 53 to 97 corrected with score 41
>PACA-UV7-01-000952 	gi|338175830|ref|YP_004652640.1| hypothetical protein PUV_18360 [Parachlamydia acanthamoebae UV7]: H-rich region from 51 to 68 corrected with score 91
>PACA-UV7-01-000974 	gi|338175808|ref|YP_004652618.1| hypothetical protein PUV_18140 [Parachlamydia acanthamoebae UV7]: I-rich region from 18 to 44 corrected with score 42
>PACA-UV7-01-000982 	gi|338175800|ref|YP_004652610.1| hypothetical protein PUV_18060 [Parachlamydia acanthamoebae UV7]: K-rich region from 89 to 305 corrected with score 144
>PACA-UV7-01-000982 	gi|338175800|ref|YP_004652610.1| hypothetical protein PUV_18060 [Parachlamydia acanthamoebae UV7]: S-rich region from 137 to 309 corrected with score 114
>PACA-UV7-01-001010 	gi|338175772|ref|YP_004652582.1| uncharacterized protein yhiI [Parachlamydia acanthamoebae UV7]: A-rich region from 86 to 242 corrected with score 49
>PACA-UV7-01-001012 	gi|338175770|ref|YP_004652580.1| inner membrane transport permease yhhJ [Parachlamydia acanthamoebae UV7]: M-rich region from 209 to 300 corrected with score 49
>PACA-UV7-01-001032 	gi|338175750|ref|YP_004652560.1| hypothetical protein PUV_17560 [Parachlamydia acanthamoebae UV7]: K-rich region from 510 to 630 corrected with score 52
>PACA-UV7-01-001045 	gi|338175737|ref|YP_004652547.1| hypothetical protein PUV_17430 [Parachlamydia acanthamoebae UV7]: K-rich region from 56 to 111 corrected with score 51
>PACA-UV7-01-001061 	gi|338175721|ref|YP_004652531.1| hypothetical protein PUV_17270 [Parachlamydia acanthamoebae UV7]: Q-rich region from 167 to 196 corrected with score 46
>PACA-UV7-01-001067 	gi|338175715|ref|YP_004652525.1| hypothetical protein PUV_17210 [Parachlamydia acanthamoebae UV7]: E-rich region from 62 to 236 corrected with score 220
>PACA-UV7-01-001067 	gi|338175715|ref|YP_004652525.1| hypothetical protein PUV_17210 [Parachlamydia acanthamoebae UV7]: K-rich region from 85 to 190 corrected with score 48
>PACA-UV7-01-001074 	gi|338175708|ref|YP_004652518.1| hypothetical protein PUV_17140 [Parachlamydia acanthamoebae UV7]: A-rich region from 41 to 160 corrected with score 47
>PACA-UV7-01-001078 	gi|338175704|ref|YP_004652514.1| hypothetical protein PUV_17100 [Parachlamydia acanthamoebae UV7]: Q-rich region from 171 to 317 corrected with score 43
>PACA-UV7-01-001080 	gi|338175702|ref|YP_004652512.1| hypothetical protein PUV_17080 [Parachlamydia acanthamoebae UV7]: E-rich region from 162 to 184 corrected with score 45
>PACA-UV7-01-001108 	gi|338175674|ref|YP_004652484.1| hypothetical protein PUV_16800 [Parachlamydia acanthamoebae UV7]: E-rich region from 908 to 1007 corrected with score 49
>PACA-UV7-01-001124 	gi|338175658|ref|YP_004652468.1| hypothetical protein PUV_16640 [Parachlamydia acanthamoebae UV7]: K-rich region from 31 to 124 corrected with score 52
>PACA-UV7-01-001130 	gi|338175652|ref|YP_004652462.1| hypothetical protein PUV_16580 [Parachlamydia acanthamoebae UV7]: Q-rich region from 183 to 211 corrected with score 43
>PACA-UV7-01-001136 	gi|338175646|ref|YP_004652456.1| isoamylase 3, chloroplastic [Parachlamydia acanthamoebae UV7]: N-rich region from 448 to 479 corrected with score 40
>PACA-UV7-01-001141 	gi|338175641|ref|YP_004652451.1| hypothetical protein PUV_16470 [Parachlamydia acanthamoebae UV7]: K-rich region from 3 to 82 corrected with score 66
>PACA-UV7-01-001151 	gi|338175631|ref|YP_004652441.1| hypothetical protein PUV_16370 [Parachlamydia acanthamoebae UV7]: E-rich region from 10 to 161 corrected with score 92
>PACA-UV7-01-001166 	gi|338175616|ref|YP_004652426.1| hypothetical protein PUV_16220 [Parachlamydia acanthamoebae UV7]: Q-rich region from 328 to 369 corrected with score 165
>PACA-UV7-01-001188 	gi|338175594|ref|YP_004652404.1| hypothetical protein PUV_16000 [Parachlamydia acanthamoebae UV7]: K-rich region from 50 to 93 corrected with score 44
>PACA-UV7-01-001192 	gi|338175590|ref|YP_004652400.1| hypothetical protein PUV_15960 [Parachlamydia acanthamoebae UV7]: H-rich region from 269 to 280 corrected with score 40
>PACA-UV7-01-001203 	gi|338175579|ref|YP_004652389.1| hypothetical protein PUV_15850 [Parachlamydia acanthamoebae UV7]: Q-rich region from 171 to 355 corrected with score 53
>PACA-UV7-01-001228 	gi|338175554|ref|YP_004652364.1| hypothetical protein PUV_15600 [Parachlamydia acanthamoebae UV7]: K-rich region from 380 to 420 corrected with score 46
>PACA-UV7-01-001235 	gi|338175547|ref|YP_004652357.1| hypothetical protein PUV_15530 [Parachlamydia acanthamoebae UV7]: Q-rich region from 13 to 53 corrected with score 46
>PACA-UV7-01-001260 	gi|338175522|ref|YP_004652332.1| hypothetical protein PUV_15280 [Parachlamydia acanthamoebae UV7]: K-rich region from 245 to 337 corrected with score 57
>PACA-UV7-01-001284 	gi|338175498|ref|YP_004652308.1| hypothetical protein PUV_15040 [Parachlamydia acanthamoebae UV7]: P-rich region from 134 to 247 corrected with score 68
>PACA-UV7-01-001284 	gi|338175498|ref|YP_004652308.1| hypothetical protein PUV_15040 [Parachlamydia acanthamoebae UV7]: E-rich region from 249 to 348 corrected with score 49
>PACA-UV7-01-001287 	gi|338175495|ref|YP_004652305.1| hypothetical protein PUV_15010 [Parachlamydia acanthamoebae UV7]: E-rich region from 608 to 771 corrected with score 61
>PACA-UV7-01-001292 	gi|338175490|ref|YP_004652300.1| hypothetical protein PUV_14960 [Parachlamydia acanthamoebae UV7]: E-rich region from 2837 to 2865 corrected with score 45
>PACA-UV7-01-001292 	gi|338175490|ref|YP_004652300.1| hypothetical protein PUV_14960 [Parachlamydia acanthamoebae UV7]: E-rich region from 1714 to 1770 corrected with score 41
>PACA-UV7-01-001298 	gi|338175484|ref|YP_004652294.1| hypothetical protein PUV_14900 [Parachlamydia acanthamoebae UV7]: K-rich region from 2 to 23 corrected with score 40
>PACA-UV7-01-001304 	gi|338175478|ref|YP_004652288.1| hypothetical protein PUV_14840 [Parachlamydia acanthamoebae UV7]: P-rich region from 672 to 691 corrected with score 87
>PACA-UV7-01-001309 	gi|338175473|ref|YP_004652283.1| hypothetical protein PUV_14790 [Parachlamydia acanthamoebae UV7]: E-rich region from 23 to 101 corrected with score 63
>PACA-UV7-01-001310 	gi|338175472|ref|YP_004652282.1| DNA polymerase III subunit delta' [Parachlamydia acanthamoebae UV7]: E-rich region from 231 to 275 corrected with score 40
>PACA-UV7-01-001312 	gi|338175470|ref|YP_004652280.1| DNA gyrase subunit A [Parachlamydia acanthamoebae UV7]: E-rich region from 808 to 865 corrected with score 64
>PACA-UV7-01-001313 	gi|338175469|ref|YP_004652279.1| DNA gyrase subunit B [Parachlamydia acanthamoebae UV7]: E-rich region from 656 to 688 corrected with score 42
>PACA-UV7-01-001322 	gi|338175460|ref|YP_004652270.1| hypothetical protein PUV_14660 [Parachlamydia acanthamoebae UV7]: S-rich region from 2 to 138 corrected with score 84
>PACA-UV7-01-001326 	gi|338175456|ref|YP_004652266.1| ribosomal RNA large subunit methyltransferase I [Parachlamydia acanthamoebae UV7]: H-rich region from 17 to 21 corrected with score 40
>PACA-UV7-01-001340 	gi|338175442|ref|YP_004652252.1| hypothetical protein PUV_14480 [Parachlamydia acanthamoebae UV7]: L-rich region from 110 to 219 corrected with score 58
>PACA-UV7-01-001349 	gi|338175433|ref|YP_004652243.1| hypothetical protein PUV_14390 [Parachlamydia acanthamoebae UV7]: Q-rich region from 65 to 1278 corrected with score 451
>PACA-UV7-01-001351 	gi|338175431|ref|YP_004652241.1| hypothetical protein PUV_14370 [Parachlamydia acanthamoebae UV7]: E-rich region from 104 to 241 corrected with score 73
>PACA-UV7-01-001382 	gi|338175400|ref|YP_004652210.1| hypothetical protein PUV_14060 [Parachlamydia acanthamoebae UV7]: K-rich region from 356 to 510 corrected with score 43
>PACA-UV7-01-001416 	gi|338175366|ref|YP_004652176.1| hypothetical protein PUV_13720 [Parachlamydia acanthamoebae UV7]: P-rich region from 47 to 80 corrected with score 53
>PACA-UV7-01-001416 	gi|338175366|ref|YP_004652176.1| hypothetical protein PUV_13720 [Parachlamydia acanthamoebae UV7]: S-rich region from 19 to 45 corrected with score 47
>PACA-UV7-01-001426 	gi|338175356|ref|YP_004652166.1| hypothetical protein PUV_13620 [Parachlamydia acanthamoebae UV7]: P-rich region from 72 to 127 corrected with score 52
>PACA-UV7-01-001426 	gi|338175356|ref|YP_004652166.1| hypothetical protein PUV_13620 [Parachlamydia acanthamoebae UV7]: S-rich region from 22 to 174 corrected with score 44
>PACA-UV7-01-001429 	gi|338175353|ref|YP_004652163.1| hypothetical protein PUV_13590 [Parachlamydia acanthamoebae UV7]: K-rich region from 98 to 114 corrected with score 42
>PACA-UV7-01-001444 	gi|338175338|ref|YP_004652148.1| hypothetical protein PUV_13440 [Parachlamydia acanthamoebae UV7]: E-rich region from 13 to 78 corrected with score 59
>PACA-UV7-01-001444 	gi|338175338|ref|YP_004652148.1| hypothetical protein PUV_13440 [Parachlamydia acanthamoebae UV7]: E-rich region from 323 to 561 corrected with score 58
>PACA-UV7-01-001493 	gi|338175289|ref|YP_004652099.1| mOMP-like family protein [Parachlamydia acanthamoebae UV7]: E-rich region from 20 to 56 corrected with score 43
>PACA-UV7-01-001496 	gi|338175286|ref|YP_004652096.1| hypothetical protein PUV_12920 [Parachlamydia acanthamoebae UV7]: E-rich region from 558 to 616 corrected with score 50
>PACA-UV7-01-001501 	gi|338175281|ref|YP_004652091.1| hypothetical protein PUV_12870 [Parachlamydia acanthamoebae UV7]: H-rich region from 3 to 42 corrected with score 124
>PACA-UV7-01-001503 	gi|338175279|ref|YP_004652089.1| protein ndvB [Parachlamydia acanthamoebae UV7]: F-rich region from 51 to 80 corrected with score 44
>PACA-UV7-01-001504 	gi|338175278|ref|YP_004652088.1| hypothetical protein PUV_12840 [Parachlamydia acanthamoebae UV7]: S-rich region from 32 to 109 corrected with score 68
>PACA-UV7-01-001504 	gi|338175278|ref|YP_004652088.1| hypothetical protein PUV_12840 [Parachlamydia acanthamoebae UV7]: P-rich region from 30 to 56 corrected with score 41
>PACA-UV7-01-001519 	gi|338175263|ref|YP_004652073.1| hypothetical protein PUV_12690 [Parachlamydia acanthamoebae UV7]: K-rich region from 977 to 1018 corrected with score 42
>PACA-UV7-01-001529 	gi|338175253|ref|YP_004652063.1| 50S ribosomal protein L35 [Parachlamydia acanthamoebae UV7]: K-rich region from 3 to 60 corrected with score 40
>PACA-UV7-01-001534 	gi|338175248|ref|YP_004652058.1| hypothetical protein PUV_12540 [Parachlamydia acanthamoebae UV7]: K-rich region from 116 to 170 corrected with score 40
>PACA-UV7-01-001537 	gi|338175245|ref|YP_004652055.1| serine/threonine-protein kinase pkn1 [Parachlamydia acanthamoebae UV7]: E-rich region from 337 to 379 corrected with score 47
>PACA-UV7-01-001557 	gi|338175225|ref|YP_004652035.1| dihydrolipoyLLysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Parachlamydia acanthamoebae UV7]: E-rich region from 76 to 171 corrected with score 43
>PACA-UV7-01-001563 	gi|338175219|ref|YP_004652029.1| hypothetical protein PUV_12250 [Parachlamydia acanthamoebae UV7]: E-rich region from 26 to 150 corrected with score 89
>PACA-UV7-01-001565 	gi|338175217|ref|YP_004652027.1| hypothetical protein PUV_12230 [Parachlamydia acanthamoebae UV7]: E-rich region from 22 to 189 corrected with score 189
>PACA-UV7-01-001568 	gi|338175214|ref|YP_004652024.1| hypothetical protein PUV_12200 [Parachlamydia acanthamoebae UV7]: M-rich region from 249 to 328 corrected with score 49
>PACA-UV7-01-001604 	gi|338175178|ref|YP_004651988.1| hypothetical protein PUV_11840 [Parachlamydia acanthamoebae UV7]: S-rich region from 23 to 187 corrected with score 248
>PACA-UV7-01-001629 	gi|338175153|ref|YP_004651963.1| methyl-accepting chemotaxis protein Tar [Parachlamydia acanthamoebae UV7]: F-rich region from 17 to 34 corrected with score 45
>PACA-UV7-01-001631 	gi|338175151|ref|YP_004651961.1| hypothetical protein PUV_11570 [Parachlamydia acanthamoebae UV7]: E-rich region from 132 to 275 corrected with score 102
>PACA-UV7-01-001660 	gi|338175122|ref|YP_004651932.1| hypothetical protein PUV_11280 [Parachlamydia acanthamoebae UV7]: A-rich region from 457 to 537 corrected with score 42
>PACA-UV7-01-001672 	gi|338175110|ref|YP_004651920.1| hypothetical protein PUV_11160 [Parachlamydia acanthamoebae UV7]: G-rich region from 25 to 58 corrected with score 49
>PACA-UV7-01-001689 	gi|338175093|ref|YP_004651903.1| hypothetical protein PUV_10990 [Parachlamydia acanthamoebae UV7]: V-rich region from 24 to 117 corrected with score 50
>PACA-UV7-01-001706 	gi|338175076|ref|YP_004651886.1| hypothetical protein PUV_10820 [Parachlamydia acanthamoebae UV7]: Q-rich region from 155 to 259 corrected with score 65
>PACA-UV7-01-001720 	gi|338175062|ref|YP_004651872.1| putative DNA repair protein Fjoh_3304 [Parachlamydia acanthamoebae UV7]: K-rich region from 216 to 268 corrected with score 42
>PACA-UV7-01-001726 	gi|338175056|ref|YP_004651866.1| trigger factor [Parachlamydia acanthamoebae UV7]: E-rich region from 252 to 349 corrected with score 48
>PACA-UV7-01-001727 	gi|338175055|ref|YP_004651865.1| hypothetical protein PUV_10610 [Parachlamydia acanthamoebae UV7]: K-rich region from 103 to 144 corrected with score 43
>PACA-UV7-01-001730 	gi|338175052|ref|YP_004651862.1| hypothetical protein PUV_10580 [Parachlamydia acanthamoebae UV7]: P-rich region from 359 to 389 corrected with score 44
>PACA-UV7-01-001741 	gi|338175041|ref|YP_004651851.1| hypothetical protein PUV_10470 [Parachlamydia acanthamoebae UV7]: Q-rich region from 151 to 223 corrected with score 44
>PACA-UV7-01-001747 	gi|338175035|ref|YP_004651845.1| UPF0053 protein Mb2387c [Parachlamydia acanthamoebae UV7]: F-rich region from 75 to 164 corrected with score 43
>PACA-UV7-01-001748 	gi|338175034|ref|YP_004651844.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase [Parachlamydia acanthamoebae UV7]: E-rich region from 45 to 189 corrected with score 80
>PACA-UV7-01-001749 	gi|338175033|ref|YP_004651843.1| uncharacterized protein CPn_0512/CP_0242/CPj0512/CpB0533 [Parachlamydia acanthamoebae UV7]: D-rich region from 649 to 669 corrected with score 63
>PACA-UV7-01-001752 	gi|338175030|ref|YP_004651840.1| hypothetical protein PUV_10360 [Parachlamydia acanthamoebae UV7]: E-rich region from 210 to 329 corrected with score 42
>PACA-UV7-01-001755 	gi|338175027|ref|YP_004651837.1| hypothetical protein PUV_10330 [Parachlamydia acanthamoebae UV7]: S-rich region from 35 to 153 corrected with score 48
>PACA-UV7-01-001762 	gi|338175020|ref|YP_004651830.1| cytochrome d ubiquinol oxidase subunit 2 [Parachlamydia acanthamoebae UV7]: W-rich region from 113 to 118 corrected with score 40
>PACA-UV7-01-001771 	gi|338175011|ref|YP_004651821.1| 60 kDa cysteine-rich outer membrane protein [Parachlamydia acanthamoebae UV7]: T-rich region from 423 to 578 corrected with score 58
>PACA-UV7-01-001771 	gi|338175011|ref|YP_004651821.1| 60 kDa cysteine-rich outer membrane protein [Parachlamydia acanthamoebae UV7]: P-rich region from 107 to 161 corrected with score 56
>PACA-UV7-01-001778 	gi|338175004|ref|YP_004651814.1| ribonuclease R [Parachlamydia acanthamoebae UV7]: K-rich region from 729 to 764 corrected with score 61
>PACA-UV7-01-001778 	gi|338175004|ref|YP_004651814.1| ribonuclease R [Parachlamydia acanthamoebae UV7]: K-rich region from 3 to 27 corrected with score 51
>PACA-UV7-01-001785 	gi|338174997|ref|YP_004651807.1| hypothetical protein PUV_10030 [Parachlamydia acanthamoebae UV7]: K-rich region from 32 to 113 corrected with score 49
>PACA-UV7-01-001788 	gi|338174994|ref|YP_004651804.1| hypothetical protein PUV_10000 [Parachlamydia acanthamoebae UV7]: S-rich region from 28 to 425 corrected with score 142
>PACA-UV7-01-001788 	gi|338174994|ref|YP_004651804.1| hypothetical protein PUV_10000 [Parachlamydia acanthamoebae UV7]: T-rich region from 176 to 268 corrected with score 40
>PACA-UV7-01-001796 	gi|338174986|ref|YP_004651796.1| skp-like protein [Parachlamydia acanthamoebae UV7]: Q-rich region from 59 to 142 corrected with score 42
>PACA-UV7-01-001864 	gi|338174918|ref|YP_004651728.1| hypothetical protein PUV_09240 [Parachlamydia acanthamoebae UV7]: K-rich region from 89 to 180 corrected with score 40
>PACA-UV7-01-001865 	gi|338174917|ref|YP_004651727.1| hypothetical protein PUV_09230 [Parachlamydia acanthamoebae UV7]: K-rich region from 248 to 316 corrected with score 49
>PACA-UV7-01-001866 	gi|338174916|ref|YP_004651726.1| hypothetical protein PUV_09220 [Parachlamydia acanthamoebae UV7]: E-rich region from 142 to 362 corrected with score 50
>PACA-UV7-01-001872 	gi|338174910|ref|YP_004651720.1| hypothetical protein PUV_09160 [Parachlamydia acanthamoebae UV7]: E-rich region from 22 to 74 corrected with score 48
>PACA-UV7-01-001880 	gi|338174902|ref|YP_004651712.1| hypothetical protein PUV_09080 [Parachlamydia acanthamoebae UV7]: K-rich region from 16 to 46 corrected with score 41
>PACA-UV7-01-001902 	gi|338174880|ref|YP_004651690.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Parachlamydia acanthamoebae UV7]: L-rich region from 83 to 117 corrected with score 50
>PACA-UV7-01-001912 	gi|338174870|ref|YP_004651680.1| DNA topoisomerase 1 [Parachlamydia acanthamoebae UV7]: K-rich region from 746 to 786 corrected with score 59
>PACA-UV7-01-001950 	gi|338174832|ref|YP_004651642.1| uncharacterized protein SCO3922 [Parachlamydia acanthamoebae UV7]: I-rich region from 3 to 81 corrected with score 54
>PACA-UV7-01-001955 	gi|338174827|ref|YP_004651637.1| hypothetical protein PUV_08330 [Parachlamydia acanthamoebae UV7]: H-rich region from 175 to 193 corrected with score 86
>PACA-UV7-01-001960 	gi|338174822|ref|YP_004651632.1| deAD-box ATP-dependent RNA helicase CshA [Parachlamydia acanthamoebae UV7]: P-rich region from 369 to 374 corrected with score 42
>PACA-UV7-01-001963 	gi|338174819|ref|YP_004651629.1| inner membrane protein ybaL [Parachlamydia acanthamoebae UV7]: V-rich region from 87 to 204 corrected with score 40
>PACA-UV7-01-001980 	gi|338174802|ref|YP_004651612.1| hypothetical protein PUV_08080 [Parachlamydia acanthamoebae UV7]: E-rich region from 17 to 67 corrected with score 59
>PACA-UV7-01-001981 	gi|338174801|ref|YP_004651611.1| hypothetical protein PUV_08070 [Parachlamydia acanthamoebae UV7]: K-rich region from 44 to 87 corrected with score 41
>PACA-UV7-01-001984 	gi|338174798|ref|YP_004651608.1| hypothetical protein PUV_08040 [Parachlamydia acanthamoebae UV7]: S-rich region from 124 to 567 corrected with score 106
>PACA-UV7-01-001989 	gi|338174793|ref|YP_004651603.1| hypothetical protein PUV_07990 [Parachlamydia acanthamoebae UV7]: Q-rich region from 333 to 561 corrected with score 102
>PACA-UV7-01-002003 	gi|338174779|ref|YP_004651589.1| hypothetical protein PUV_07850 [Parachlamydia acanthamoebae UV7]: K-rich region from 219 to 254 corrected with score 47
>PACA-UV7-01-002004 	gi|338174778|ref|YP_004651588.1| hypothetical protein PUV_07840 [Parachlamydia acanthamoebae UV7]: P-rich region from 112 to 130 corrected with score 46
>PACA-UV7-01-002004 	gi|338174778|ref|YP_004651588.1| hypothetical protein PUV_07840 [Parachlamydia acanthamoebae UV7]: K-rich region from 218 to 248 corrected with score 41
>PACA-UV7-01-002010 	gi|338174772|ref|YP_004651582.1| negative regulator of type III secretion [Parachlamydia acanthamoebae UV7]: E-rich region from 372 to 396 corrected with score 69
>PACA-UV7-01-002051 	gi|338174731|ref|YP_004651541.1| hypothetical protein PUV_07370 [Parachlamydia acanthamoebae UV7]: E-rich region from 51 to 114 corrected with score 56
>PACA-UV7-01-002057 	gi|338174725|ref|YP_004651535.1| hypothetical protein PUV_07310 [Parachlamydia acanthamoebae UV7]: K-rich region from 2991 to 3064 corrected with score 44
>PACA-UV7-01-002059 	gi|338174723|ref|YP_004651533.1| hypothetical protein PUV_07290 [Parachlamydia acanthamoebae UV7]: S-rich region from 29 to 107 corrected with score 55
>PACA-UV7-01-002065 	gi|338174717|ref|YP_004651527.1| hypothetical protein PUV_07230 [Parachlamydia acanthamoebae UV7]: E-rich region from 199 to 233 corrected with score 48
>PACA-UV7-01-002073 	gi|338174709|ref|YP_004651519.1| hypothetical protein PUV_07150 [Parachlamydia acanthamoebae UV7]: T-rich region from 9 to 45 corrected with score 73
>PACA-UV7-01-002078 	gi|338174704|ref|YP_004651514.1| hypothetical protein PUV_07100 [Parachlamydia acanthamoebae UV7]: P-rich region from 11 to 26 corrected with score 41
>PACA-UV7-01-002085 	gi|338174697|ref|YP_004651507.1| uncharacterized ABC transporter ATP-binding protein YkpA [Parachlamydia acanthamoebae UV7]: E-rich region from 525 to 641 corrected with score 70
>PACA-UV7-01-002085 	gi|338174697|ref|YP_004651507.1| uncharacterized ABC transporter ATP-binding protein YkpA [Parachlamydia acanthamoebae UV7]: K-rich region from 244 to 291 corrected with score 44
>PACA-UV7-01-002097 	gi|338174685|ref|YP_004651495.1| uncharacterized RNA pseudouridine synthase aq_1464 [Parachlamydia acanthamoebae UV7]: F-rich region from 1 to 19 corrected with score 46
>PACA-UV7-01-002113 	gi|338174669|ref|YP_004651479.1| GTPase obg [Parachlamydia acanthamoebae UV7]: G-rich region from 31 to 43 corrected with score 43
>PACA-UV7-01-002123 	gi|338174659|ref|YP_004651469.1| hypothetical protein PUV_06650 [Parachlamydia acanthamoebae UV7]: S-rich region from 258 to 303 corrected with score 44
>PACA-UV7-01-002128 	gi|338174654|ref|YP_004651464.1| hypothetical protein PUV_06600 [Parachlamydia acanthamoebae UV7]: F-rich region from 255 to 281 corrected with score 44
>PACA-UV7-01-002139 	gi|338174643|ref|YP_004651453.1| hypothetical protein PUV_06490 [Parachlamydia acanthamoebae UV7]: P-rich region from 237 to 254 corrected with score 73
>PACA-UV7-01-002139 	gi|338174643|ref|YP_004651453.1| hypothetical protein PUV_06490 [Parachlamydia acanthamoebae UV7]: E-rich region from 160 to 224 corrected with score 67
>PACA-UV7-01-002172 	gi|338174610|ref|YP_004651420.1| hypothetical protein PUV_06160 [Parachlamydia acanthamoebae UV7]: K-rich region from 113 to 172 corrected with score 53
>PACA-UV7-01-002177 	gi|338174605|ref|YP_004651415.1| hypothetical protein PUV_06110 [Parachlamydia acanthamoebae UV7]: E-rich region from 93 to 383 corrected with score 205
>PACA-UV7-01-002177 	gi|338174605|ref|YP_004651415.1| hypothetical protein PUV_06110 [Parachlamydia acanthamoebae UV7]: R-rich region from 133 to 150 corrected with score 41
>PACA-UV7-01-002180 	gi|338174602|ref|YP_004651412.1| heat shock protein 70 [Parachlamydia acanthamoebae UV7]: E-rich region from 486 to 659 corrected with score 70
>PACA-UV7-01-002181 	gi|338174601|ref|YP_004651411.1| protein grpE [Parachlamydia acanthamoebae UV7]: E-rich region from 3 to 91 corrected with score 54
>PACA-UV7-01-002195 	gi|338174587|ref|YP_004651397.1| hypothetical protein PUV_05930 [Parachlamydia acanthamoebae UV7]: G-rich region from 615 to 1530 corrected with score 977
>PACA-UV7-01-002195 	gi|338174587|ref|YP_004651397.1| hypothetical protein PUV_05930 [Parachlamydia acanthamoebae UV7]: T-rich region from 639 to 1621 corrected with score 846
>PACA-UV7-01-002199 	gi|338174583|ref|YP_004651393.1| hypothetical protein PUV_05890 [Parachlamydia acanthamoebae UV7]: E-rich region from 25 to 174 corrected with score 63
>PACA-UV7-01-002201 	gi|338174581|ref|YP_004651391.1| hypothetical protein PUV_05870 [Parachlamydia acanthamoebae UV7]: G-rich region from 42 to 471 corrected with score 424
>PACA-UV7-01-002201 	gi|338174581|ref|YP_004651391.1| hypothetical protein PUV_05870 [Parachlamydia acanthamoebae UV7]: T-rich region from 50 to 470 corrected with score 456
>PACA-UV7-01-002201 	gi|338174581|ref|YP_004651391.1| hypothetical protein PUV_05870 [Parachlamydia acanthamoebae UV7]: S-rich region from 465 to 580 corrected with score 59
>PACA-UV7-01-002202 	gi|338174580|ref|YP_004651390.1| hypothetical protein PUV_05860 [Parachlamydia acanthamoebae UV7]: T-rich region from 109 to 175 corrected with score 46
>PACA-UV7-01-002212 	gi|338174570|ref|YP_004651380.1| hypothetical protein PUV_05760 [Parachlamydia acanthamoebae UV7]: E-rich region from 19 to 66 corrected with score 44
>PACA-UV7-01-002212 	gi|338174570|ref|YP_004651380.1| hypothetical protein PUV_05760 [Parachlamydia acanthamoebae UV7]: V-rich region from 89 to 138 corrected with score 43
>PACA-UV7-01-002215 	gi|338174567|ref|YP_004651377.1| type III secretion outer membrane ring component [Parachlamydia acanthamoebae UV7]: E-rich region from 26 to 171 corrected with score 48
>PACA-UV7-01-002215 	gi|338174567|ref|YP_004651377.1| type III secretion outer membrane ring component [Parachlamydia acanthamoebae UV7]: T-rich region from 655 to 834 corrected with score 48
>PACA-UV7-01-002215 	gi|338174567|ref|YP_004651377.1| type III secretion outer membrane ring component [Parachlamydia acanthamoebae UV7]: K-rich region from 30 to 62 corrected with score 41
>PACA-UV7-01-002217 	gi|338174565|ref|YP_004651375.1| type III secretion outer membrane ring component [Parachlamydia acanthamoebae UV7]: E-rich region from 59 to 167 corrected with score 44
>PACA-UV7-01-002217 	gi|338174565|ref|YP_004651375.1| type III secretion outer membrane ring component [Parachlamydia acanthamoebae UV7]: T-rich region from 785 to 835 corrected with score 43
>PACA-UV7-01-002219 	gi|338174563|ref|YP_004651373.1| type III secretion basal body protein [Parachlamydia acanthamoebae UV7]: E-rich region from 279 to 383 corrected with score 200
>PACA-UV7-01-002220 	gi|338174562|ref|YP_004651372.1| hypothetical protein PUV_05680 [Parachlamydia acanthamoebae UV7]: E-rich region from 33 to 150 corrected with score 50
>PACA-UV7-01-002221 	gi|338174561|ref|YP_004651371.1| type III secretion T3S chaperone [Parachlamydia acanthamoebae UV7]: K-rich region from 15 to 142 corrected with score 73
>PACA-UV7-01-002227 	gi|338174555|ref|YP_004651365.1| type III secretion integral inner membrane ring protein [Parachlamydia acanthamoebae UV7]: E-rich region from 101 to 308 corrected with score 212
>PACA-UV7-01-002241 	gi|338174541|ref|YP_004651351.1| hypothetical protein PUV_05470 [Parachlamydia acanthamoebae UV7]: K-rich region from 97 to 141 corrected with score 50
>PACA-UV7-01-002252 	gi|338174530|ref|YP_004651340.1| hypothetical protein PUV_05360 [Parachlamydia acanthamoebae UV7]: S-rich region from 227 to 293 corrected with score 48
>PACA-UV7-01-002252 	gi|338174530|ref|YP_004651340.1| hypothetical protein PUV_05360 [Parachlamydia acanthamoebae UV7]: K-rich region from 511 to 553 corrected with score 42
>PACA-UV7-01-002255 	gi|338174527|ref|YP_004651337.1| hypothetical protein PUV_05330 [Parachlamydia acanthamoebae UV7]: S-rich region from 227 to 284 corrected with score 57
>PACA-UV7-01-002257 	gi|338174525|ref|YP_004651335.1| hypothetical protein PUV_05310 [Parachlamydia acanthamoebae UV7]: S-rich region from 26 to 126 corrected with score 45
>PACA-UV7-01-002259 	gi|338174523|ref|YP_004651333.1| hypothetical protein PUV_05290 [Parachlamydia acanthamoebae UV7]: S-rich region from 229 to 299 corrected with score 70
>PACA-UV7-01-002262 	gi|338174520|ref|YP_004651330.1| hypothetical protein PUV_05260 [Parachlamydia acanthamoebae UV7]: N-rich region from 34 to 61 corrected with score 40
>PACA-UV7-01-002264 	gi|338174518|ref|YP_004651328.1| hypothetical protein PUV_05240 [Parachlamydia acanthamoebae UV7]: S-rich region from 229 to 292 corrected with score 48
>PACA-UV7-01-002264 	gi|338174518|ref|YP_004651328.1| hypothetical protein PUV_05240 [Parachlamydia acanthamoebae UV7]: K-rich region from 510 to 552 corrected with score 41
>PACA-UV7-01-002268 	gi|338174514|ref|YP_004651324.1| putative transposase for insertion sequence element IS702 [Parachlamydia acanthamoebae UV7]: K-rich region from 40 to 99 corrected with score 43
>PACA-UV7-01-002269 	gi|338174513|ref|YP_004651323.1| hypothetical protein PUV_05190 [Parachlamydia acanthamoebae UV7]: S-rich region from 229 to 299 corrected with score 70
>PACA-UV7-01-002271 	gi|338174511|ref|YP_004651321.1| hypothetical protein PUV_05170 [Parachlamydia acanthamoebae UV7]: S-rich region from 26 to 126 corrected with score 48
>PACA-UV7-01-002273 	gi|338174509|ref|YP_004651319.1| type III secretion specific chlamydia chaperone 2 [Parachlamydia acanthamoebae UV7]: E-rich region from 207 to 247 corrected with score 47
>PACA-UV7-01-002274 	gi|338174508|ref|YP_004651318.1| putative type III secretion translocator protein CopB [Parachlamydia acanthamoebae UV7]: A-rich region from 558 to 795 corrected with score 63
>PACA-UV7-01-002274 	gi|338174508|ref|YP_004651318.1| putative type III secretion translocator protein CopB [Parachlamydia acanthamoebae UV7]: Q-rich region from 140 to 245 corrected with score 45
>PACA-UV7-01-002276 	gi|338174506|ref|YP_004651316.1| hypothetical protein PUV_05120 [Parachlamydia acanthamoebae UV7]: S-rich region from 33 to 380 corrected with score 58
>PACA-UV7-01-002279 	gi|338174503|ref|YP_004651313.1| hypothetical protein PUV_05090 [Parachlamydia acanthamoebae UV7]: S-rich region from 2 to 900 corrected with score 139
>PACA-UV7-01-002289 	gi|338174493|ref|YP_004651303.1| hypothetical protein PUV_04990 [Parachlamydia acanthamoebae UV7]: Q-rich region from 699 to 742 corrected with score 43
>PACA-UV7-01-002294 	gi|338174488|ref|YP_004651298.1| hypothetical protein PUV_04940 [Parachlamydia acanthamoebae UV7]: K-rich region from 468 to 511 corrected with score 43
>PACA-UV7-01-002304 	gi|338174478|ref|YP_004651288.1| putative ATP-dependent Clp protease ATP-binding subunit [Parachlamydia acanthamoebae UV7]: E-rich region from 438 to 505 corrected with score 52
>PACA-UV7-01-002314 	gi|338174468|ref|YP_004651278.1| hypothetical protein PUV_04740 [Parachlamydia acanthamoebae UV7]: F-rich region from 11 to 28 corrected with score 55
>PACA-UV7-01-002326 	gi|338174456|ref|YP_004651266.1| hypothetical protein PUV_04620 [Parachlamydia acanthamoebae UV7]: G-rich region from 29 to 80 corrected with score 104
>PACA-UV7-01-002330 	gi|338174452|ref|YP_004651262.1| hypothetical protein PUV_04580 [Parachlamydia acanthamoebae UV7]: T-rich region from 387 to 590 corrected with score 44
>PACA-UV7-01-002363 	gi|338174419|ref|YP_004651229.1| hypothetical protein PUV_04250 [Parachlamydia acanthamoebae UV7]: E-rich region from 22 to 71 corrected with score 58
>PACA-UV7-01-002363 	gi|338174419|ref|YP_004651229.1| hypothetical protein PUV_04250 [Parachlamydia acanthamoebae UV7]: R-rich region from 48 to 86 corrected with score 42
>PACA-UV7-01-002367 	gi|338174415|ref|YP_004651225.1| hypothetical protein PUV_04210 [Parachlamydia acanthamoebae UV7]: E-rich region from 165 to 211 corrected with score 46
>PACA-UV7-01-002372 	gi|338174410|ref|YP_004651220.1| GTPase Der [Parachlamydia acanthamoebae UV7]: E-rich region from 435 to 484 corrected with score 65
>PACA-UV7-01-002405 	gi|338174377|ref|YP_004651187.1| hypothetical protein PUV_03830 [Parachlamydia acanthamoebae UV7]: I-rich region from 253 to 314 corrected with score 40
>PACA-UV7-01-002413 	gi|338174369|ref|YP_004651179.1| hypothetical protein PUV_03750 [Parachlamydia acanthamoebae UV7]: K-rich region from 15 to 143 corrected with score 58
>PACA-UV7-01-002421 	gi|338174361|ref|YP_004651171.1| hypothetical protein PUV_03670 [Parachlamydia acanthamoebae UV7]: L-rich region from 299 to 470 corrected with score 41
>PACA-UV7-01-002454 	gi|338174328|ref|YP_004651138.1| hypothetical protein, putative type III secreted [Parachlamydia acanthamoebae UV7]: Q-rich region from 197 to 944 corrected with score 223
>PACA-UV7-01-002454 	gi|338174328|ref|YP_004651138.1| hypothetical protein, putative type III secreted [Parachlamydia acanthamoebae UV7]: K-rich region from 210 to 425 corrected with score 95
>PACA-UV7-01-002458 	gi|338174324|ref|YP_004651134.1| hypothetical protein PUV_03300 [Parachlamydia acanthamoebae UV7]: S-rich region from 26 to 401 corrected with score 77
>PACA-UV7-01-002461 	gi|338174321|ref|YP_004651131.1| hypothetical protein PUV_03270 [Parachlamydia acanthamoebae UV7]: S-rich region from 4 to 62 corrected with score 58
>PACA-UV7-01-002466 	gi|338174316|ref|YP_004651126.1| hypothetical protein PUV_03220 [Parachlamydia acanthamoebae UV7]: E-rich region from 148 to 180 corrected with score 46
>PACA-UV7-01-002484 	gi|338174298|ref|YP_004651108.1| lon protease [Parachlamydia acanthamoebae UV7]: K-rich region from 585 to 622 corrected with score 40
>PACA-UV7-01-002485 	gi|338174297|ref|YP_004651107.1| hypothetical protein PUV_03030 [Parachlamydia acanthamoebae UV7]: P-rich region from 142 to 155 corrected with score 47
>PACA-UV7-01-002490 	gi|338174292|ref|YP_004651102.1| hypothetical protein PUV_02980 [Parachlamydia acanthamoebae UV7]: K-rich region from 288 to 330 corrected with score 48
>PACA-UV7-01-002491 	gi|338174291|ref|YP_004651101.1| protein bem46 [Parachlamydia acanthamoebae UV7]: K-rich region from 253 to 308 corrected with score 51
>PACA-UV7-01-002537 	gi|338174245|ref|YP_004651055.1| hypothetical protein PUV_02510 [Parachlamydia acanthamoebae UV7]: P-rich region from 88 to 111 corrected with score 42
>PACA-UV7-01-002545 	gi|338174237|ref|YP_004651047.1| hypothetical protein PUV_02430 [Parachlamydia acanthamoebae UV7]: S-rich region from 71 to 581 corrected with score 92
>PACA-UV7-01-002545 	gi|338174237|ref|YP_004651047.1| hypothetical protein PUV_02430 [Parachlamydia acanthamoebae UV7]: E-rich region from 358 to 411 corrected with score 57
>PACA-UV7-01-002545 	gi|338174237|ref|YP_004651047.1| hypothetical protein PUV_02430 [Parachlamydia acanthamoebae UV7]: P-rich region from 91 to 121 corrected with score 46
>PACA-UV7-01-002545 	gi|338174237|ref|YP_004651047.1| hypothetical protein PUV_02430 [Parachlamydia acanthamoebae UV7]: K-rich region from 68 to 220 corrected with score 40
>PACA-UV7-01-002565 	gi|338174217|ref|YP_004651027.1| hypothetical protein PUV_02230 [Parachlamydia acanthamoebae UV7]: Q-rich region from 389 to 684 corrected with score 53
>PACA-UV7-01-002581 	gi|338174201|ref|YP_004651011.1| heat shock protein 60 [Parachlamydia acanthamoebae UV7]: G-rich region from 538 to 558 corrected with score 63
>PACA-UV7-01-002581 	gi|338174201|ref|YP_004651011.1| heat shock protein 60 [Parachlamydia acanthamoebae UV7]: A-rich region from 371 to 520 corrected with score 40
>PACA-UV7-01-002596 	gi|338174186|ref|YP_004650996.1| hypothetical protein PUV_01920 [Parachlamydia acanthamoebae UV7]: I-rich region from 325 to 407 corrected with score 69
>PACA-UV7-01-002628 	gi|338174154|ref|YP_004650964.1| hypothetical protein PUV_01600 [Parachlamydia acanthamoebae UV7]: G-rich region from 34 to 79 corrected with score 87
>PACA-UV7-01-002636 	gi|338174146|ref|YP_004650956.1| UPF0158 protein CPn_0518/CP_0235/CPj0518/CpB0539 [Parachlamydia acanthamoebae UV7]: K-rich region from 329 to 395 corrected with score 92
>PACA-UV7-01-002636 	gi|338174146|ref|YP_004650956.1| UPF0158 protein CPn_0518/CP_0235/CPj0518/CpB0539 [Parachlamydia acanthamoebae UV7]: D-rich region from 311 to 327 corrected with score 65
>PACA-UV7-01-002642 	gi|338174140|ref|YP_004650950.1| type III secretion integral inner membrane protein [Parachlamydia acanthamoebae UV7]: L-rich region from 101 to 134 corrected with score 44
>PACA-UV7-01-002645 	gi|338174137|ref|YP_004650947.1| type III secretion periplasmic lipoprotein [Parachlamydia acanthamoebae UV7]: E-rich region from 293 to 318 corrected with score 51
>PACA-UV7-01-002646 	gi|338174136|ref|YP_004650946.1| hypothetical protein PUV_01420 [Parachlamydia acanthamoebae UV7]: K-rich region from 55 to 253 corrected with score 76
>PACA-UV7-01-002646 	gi|338174136|ref|YP_004650946.1| hypothetical protein PUV_01420 [Parachlamydia acanthamoebae UV7]: S-rich region from 56 to 179 corrected with score 48
>PACA-UV7-01-002651 	gi|338174131|ref|YP_004650941.1| hypothetical protein PUV_01370 [Parachlamydia acanthamoebae UV7]: S-rich region from 4 to 265 corrected with score 84
>PACA-UV7-01-002661 	gi|338174121|ref|YP_004650931.1| hypothetical protein PUV_01270 [Parachlamydia acanthamoebae UV7]: S-rich region from 16 to 240 corrected with score 109
>PACA-UV7-01-002661 	gi|338174121|ref|YP_004650931.1| hypothetical protein PUV_01270 [Parachlamydia acanthamoebae UV7]: G-rich region from 71 to 141 corrected with score 40
>PACA-UV7-01-002675 	gi|338174107|ref|YP_004650917.1| hypothetical protein PUV_01130 [Parachlamydia acanthamoebae UV7]: S-rich region from 2 to 153 corrected with score 55
>PACA-UV7-01-002677 	gi|338174105|ref|YP_004650915.1| hypothetical protein PUV_01110 [Parachlamydia acanthamoebae UV7]: Q-rich region from 23 to 157 corrected with score 49
>PACA-UV7-01-002690 	gi|338174092|ref|YP_004650902.1| hypothetical protein PUV_00980 [Parachlamydia acanthamoebae UV7]: I-rich region from 166 to 264 corrected with score 48
>PACA-UV7-01-002691 	gi|338174091|ref|YP_004650901.1| UPF0337 protein yjbJ [Parachlamydia acanthamoebae UV7]: E-rich region from 45 to 84 corrected with score 53
>PACA-UV7-01-002699 	gi|338174083|ref|YP_004650893.1| hypothetical protein PUV_00890 [Parachlamydia acanthamoebae UV7]: G-rich region from 57 to 101 corrected with score 94
>PACA-UV7-01-002714 	gi|338174068|ref|YP_004650878.1| methyl-accepting chemotaxis protein Tar [Parachlamydia acanthamoebae UV7]: S-rich region from 415 to 546 corrected with score 44
>PACA-UV7-01-002727 	gi|338174055|ref|YP_004650865.1| ubiquinol oxidase subunit 2 [Parachlamydia acanthamoebae UV7]: L-rich region from 10 to 75 corrected with score 44
>PACA-UV7-01-002748 	gi|338174034|ref|YP_004650844.1| hypothetical protein PUV_00400 [Parachlamydia acanthamoebae UV7]: E-rich region from 32 to 79 corrected with score 56
>PACA-UV7-01-002752 	gi|338174030|ref|YP_004650840.1| ribosome-recycling factor [Parachlamydia acanthamoebae UV7]: K-rich region from 108 to 179 corrected with score 48
>SNEG-ZXX-01-000010 	gi|338734267|ref|YP_004672740.1| hypothetical protein SNE_A23720 [Simkania negevensis Z]: T-rich region from 2122 to 2247 corrected with score 61
>SNEG-ZXX-01-000010 	gi|338734267|ref|YP_004672740.1| hypothetical protein SNE_A23720 [Simkania negevensis Z]: T-rich region from 1750 to 2044 corrected with score 50
>SNEG-ZXX-01-000010 	gi|338734267|ref|YP_004672740.1| hypothetical protein SNE_A23720 [Simkania negevensis Z]: Q-rich region from 233 to 335 corrected with score 45
>SNEG-ZXX-01-000016 	gi|338734261|ref|YP_004672734.1| hypothetical protein SNE_A23660 [Simkania negevensis Z]: F-rich region from 7 to 19 corrected with score 42
>SNEG-ZXX-01-000031 	gi|338734246|ref|YP_004672719.1| 30S ribosomal protein S20 [Simkania negevensis Z]: K-rich region from 3 to 95 corrected with score 47
>SNEG-ZXX-01-000035 	gi|338734242|ref|YP_004672715.1| hypothetical protein SNE_A23470 [Simkania negevensis Z]: S-rich region from 391 to 468 corrected with score 69
>SNEG-ZXX-01-000064 	gi|338734213|ref|YP_004672686.1| hypothetical protein SNE_A23180 [Simkania negevensis Z]: Q-rich region from 102 to 138 corrected with score 72
>SNEG-ZXX-01-000074 	gi|338734203|ref|YP_004672676.1| hypothetical protein SNE_A23080 [Simkania negevensis Z]: P-rich region from 461 to 494 corrected with score 56
>SNEG-ZXX-01-000088 	gi|338734189|ref|YP_004672662.1| uvrABC system protein B [Simkania negevensis Z]: E-rich region from 569 to 642 corrected with score 41
>SNEG-ZXX-01-000089 	gi|338734188|ref|YP_004672661.1| hypothetical protein SNE_A22930 [Simkania negevensis Z]: E-rich region from 63 to 242 corrected with score 60
>SNEG-ZXX-01-000089 	gi|338734188|ref|YP_004672661.1| hypothetical protein SNE_A22930 [Simkania negevensis Z]: S-rich region from 238 to 344 corrected with score 52
>SNEG-ZXX-01-000089 	gi|338734188|ref|YP_004672661.1| hypothetical protein SNE_A22930 [Simkania negevensis Z]: P-rich region from 247 to 266 corrected with score 44
>SNEG-ZXX-01-000090 	gi|338734187|ref|YP_004672660.1| hypothetical protein SNE_A22920 [Simkania negevensis Z]: S-rich region from 42 to 333 corrected with score 77
>SNEG-ZXX-01-000090 	gi|338734187|ref|YP_004672660.1| hypothetical protein SNE_A22920 [Simkania negevensis Z]: C-rich region from 16 to 21 corrected with score 44
>SNEG-ZXX-01-000091 	gi|338734186|ref|YP_004672659.1| hypothetical protein SNE_A22910 [Simkania negevensis Z]: P-rich region from 474 to 513 corrected with score 64
>SNEG-ZXX-01-000091 	gi|338734186|ref|YP_004672659.1| hypothetical protein SNE_A22910 [Simkania negevensis Z]: S-rich region from 804 to 1071 corrected with score 60
>SNEG-ZXX-01-000101 	gi|338734176|ref|YP_004672649.1| hypothetical protein SNE_A22810 [Simkania negevensis Z]: F-rich region from 3 to 74 corrected with score 41
>SNEG-ZXX-01-000104 	gi|338734173|ref|YP_004672646.1| DNA topoisomerase 1 [Simkania negevensis Z]: E-rich region from 440 to 468 corrected with score 48
>SNEG-ZXX-01-000114 	gi|338734163|ref|YP_004672636.1| ATP-dependent DNA helicase pcrA [Simkania negevensis Z]: E-rich region from 639 to 653 corrected with score 40
>SNEG-ZXX-01-000123 	gi|338734154|ref|YP_004672627.1| heat shock protein 60 [Simkania negevensis Z]: G-rich region from 530 to 554 corrected with score 53
>SNEG-ZXX-01-000135 	gi|338734142|ref|YP_004672615.1| putative ribosome biogenesis GTPase RsgA [Simkania negevensis Z]: K-rich region from 19 to 54 corrected with score 50
>SNEG-ZXX-01-000160 	gi|338734117|ref|YP_004672590.1| transcription termination factor Rho [Simkania negevensis Z]: Q-rich region from 1 to 52 corrected with score 78
>SNEG-ZXX-01-000167 	gi|338734110|ref|YP_004672583.1| hypothetical protein SNE_A22150 [Simkania negevensis Z]: P-rich region from 98 to 113 corrected with score 55
>SNEG-ZXX-01-000197 	gi|338734080|ref|YP_004672553.1| putative bifunctional preprotein translocase subunit SecD/SecF [Simkania negevensis Z]: V-rich region from 1019 to 1088 corrected with score 50
>SNEG-ZXX-01-000220 	gi|338734057|ref|YP_004672530.1| hypothetical protein SNE_A21620 [Simkania negevensis Z]: K-rich region from 3 to 48 corrected with score 46
>SNEG-ZXX-01-000272 	gi|338734005|ref|YP_004672478.1| preprotein translocase subunit secY [Simkania negevensis Z]: I-rich region from 234 to 252 corrected with score 43
>SNEG-ZXX-01-000274 	gi|338734003|ref|YP_004672476.1| 30S ribosomal protein S11 [Simkania negevensis Z]: K-rich region from 3 to 24 corrected with score 40
>SNEG-ZXX-01-000278 	gi|338733999|ref|YP_004672472.1| hypothetical protein SNE_A21040 [Simkania negevensis Z]: E-rich region from 190 to 250 corrected with score 49
>SNEG-ZXX-01-000278 	gi|338733999|ref|YP_004672472.1| hypothetical protein SNE_A21040 [Simkania negevensis Z]: K-rich region from 70 to 137 corrected with score 47
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: S-rich region from 448 to 3999 corrected with score 594
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: T-rich region from 3198 to 3432 corrected with score 69
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: T-rich region from 2433 to 2705 corrected with score 64
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: T-rich region from 1358 to 1805 corrected with score 57
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: T-rich region from 3735 to 3907 corrected with score 54
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: T-rich region from 4285 to 4408 corrected with score 52
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: G-rich region from 935 to 1036 corrected with score 43
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: G-rich region from 563 to 631 corrected with score 41
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: T-rich region from 575 to 714 corrected with score 43
>SNEG-ZXX-01-000288 	gi|338733989|ref|YP_004672462.1| hypothetical protein SNE_A20940 [Simkania negevensis Z]: S-rich region from 4134 to 4277 corrected with score 40
>SNEG-ZXX-01-000297 	gi|338733980|ref|YP_004672453.1| hypothetical protein SNE_A20850 [Simkania negevensis Z]: Q-rich region from 8 to 73 corrected with score 47
>SNEG-ZXX-01-000303 	gi|338733974|ref|YP_004672447.1| transporter, MscS family [Simkania negevensis Z]: V-rich region from 14 to 96 corrected with score 42
>SNEG-ZXX-01-000325 	gi|338733952|ref|YP_004672425.1| chaperone protein dnaJ [Simkania negevensis Z]: G-rich region from 68 to 120 corrected with score 48
>SNEG-ZXX-01-000326 	gi|338733951|ref|YP_004672424.1| 30S ribosomal protein S21 [Simkania negevensis Z]: K-rich region from 14 to 61 corrected with score 46
>SNEG-ZXX-01-000328 	gi|338733949|ref|YP_004672422.1| lon protease [Simkania negevensis Z]: D-rich region from 5 to 36 corrected with score 48
>SNEG-ZXX-01-000341 	gi|338733936|ref|YP_004672409.1| hypothetical protein SNE_A20410 [Simkania negevensis Z]: E-rich region from 25 to 174 corrected with score 87
>SNEG-ZXX-01-000346 	gi|338733931|ref|YP_004672404.1| hypothetical protein SNE_A20360 [Simkania negevensis Z]: S-rich region from 2 to 277 corrected with score 42
>SNEG-ZXX-01-000347 	gi|338733930|ref|YP_004672403.1| type III secretion translocator protein [Simkania negevensis Z]: A-rich region from 138 to 383 corrected with score 73
>SNEG-ZXX-01-000347 	gi|338733930|ref|YP_004672403.1| type III secretion translocator protein [Simkania negevensis Z]: Q-rich region from 7 to 124 corrected with score 50
>SNEG-ZXX-01-000348 	gi|338733929|ref|YP_004672402.1| hypothetical protein SNE_A20340 [Simkania negevensis Z]: S-rich region from 109 to 240 corrected with score 47
>SNEG-ZXX-01-000349 	gi|338733928|ref|YP_004672401.1| hypothetical protein SNE_A20330 [Simkania negevensis Z]: S-rich region from 167 to 271 corrected with score 73
>SNEG-ZXX-01-000371 	gi|338733906|ref|YP_004672379.1| hypothetical protein SNE_A20110 [Simkania negevensis Z]: T-rich region from 1593 to 1693 corrected with score 56
>SNEG-ZXX-01-000377 	gi|338733900|ref|YP_004672373.1| putative flagellar motor switch protein [Simkania negevensis Z]: E-rich region from 276 to 318 corrected with score 41
>SNEG-ZXX-01-000378 	gi|338733899|ref|YP_004672372.1| type III secretion basal body protein [Simkania negevensis Z]: Q-rich region from 13 to 90 corrected with score 41
>SNEG-ZXX-01-000379 	gi|338733898|ref|YP_004672371.1| hypothetical protein SNE_A20030 [Simkania negevensis Z]: E-rich region from 18 to 340 corrected with score 131
>SNEG-ZXX-01-000379 	gi|338733898|ref|YP_004672371.1| hypothetical protein SNE_A20030 [Simkania negevensis Z]: P-rich region from 126 to 164 corrected with score 52
>SNEG-ZXX-01-000379 	gi|338733898|ref|YP_004672371.1| hypothetical protein SNE_A20030 [Simkania negevensis Z]: Q-rich region from 124 to 210 corrected with score 47
>SNEG-ZXX-01-000380 	gi|338733897|ref|YP_004672370.1| hypothetical protein SNE_A20020 [Simkania negevensis Z]: E-rich region from 20 to 151 corrected with score 122
>SNEG-ZXX-01-000380 	gi|338733897|ref|YP_004672370.1| hypothetical protein SNE_A20020 [Simkania negevensis Z]: K-rich region from 15 to 138 corrected with score 68
>SNEG-ZXX-01-000387 	gi|338733890|ref|YP_004672363.1| type III secretion needle formation regulating protein [Simkania negevensis Z]: K-rich region from 5 to 52 corrected with score 45
>SNEG-ZXX-01-000392 	gi|338733885|ref|YP_004672358.1| hypothetical protein SNE_A19900 [Simkania negevensis Z]: K-rich region from 47 to 152 corrected with score 65
>SNEG-ZXX-01-000404 	gi|338733873|ref|YP_004672346.1| hypothetical protein SNE_A19780 [Simkania negevensis Z]: Q-rich region from 41 to 142 corrected with score 44
>SNEG-ZXX-01-000404 	gi|338733873|ref|YP_004672346.1| hypothetical protein SNE_A19780 [Simkania negevensis Z]: V-rich region from 151 to 184 corrected with score 43
>SNEG-ZXX-01-000405 	gi|338733872|ref|YP_004672345.1| hypothetical protein SNE_A19770 [Simkania negevensis Z]: S-rich region from 2 to 284 corrected with score 50
>SNEG-ZXX-01-000405 	gi|338733872|ref|YP_004672345.1| hypothetical protein SNE_A19770 [Simkania negevensis Z]: E-rich region from 99 to 213 corrected with score 41
>SNEG-ZXX-01-000410 	gi|338733867|ref|YP_004672340.1| hypothetical protein SNE_A19720 [Simkania negevensis Z]: A-rich region from 228 to 323 corrected with score 50
>SNEG-ZXX-01-000414 	gi|338733863|ref|YP_004672336.1| hypothetical protein SNE_A19680 [Simkania negevensis Z]: S-rich region from 84 to 276 corrected with score 62
>SNEG-ZXX-01-000417 	gi|338733860|ref|YP_004672333.1| hypothetical protein SNE_A19650 [Simkania negevensis Z]: A-rich region from 202 to 483 corrected with score 125
>SNEG-ZXX-01-000417 	gi|338733860|ref|YP_004672333.1| hypothetical protein SNE_A19650 [Simkania negevensis Z]: E-rich region from 17 to 94 corrected with score 52
>SNEG-ZXX-01-000418 	gi|338733859|ref|YP_004672332.1| hypothetical protein SNE_A19640 [Simkania negevensis Z]: S-rich region from 125 to 287 corrected with score 44
>SNEG-ZXX-01-000423 	gi|338733854|ref|YP_004672327.1| hypothetical protein SNE_A19590 [Simkania negevensis Z]: K-rich region from 441 to 502 corrected with score 111
>SNEG-ZXX-01-000423 	gi|338733854|ref|YP_004672327.1| hypothetical protein SNE_A19590 [Simkania negevensis Z]: E-rich region from 109 to 362 corrected with score 57
>SNEG-ZXX-01-000424 	gi|338733853|ref|YP_004672326.1| hypothetical protein SNE_A19580 [Simkania negevensis Z]: E-rich region from 103 to 146 corrected with score 71
>SNEG-ZXX-01-000432 	gi|338733845|ref|YP_004672318.1| hypothetical protein SNE_A19500 [Simkania negevensis Z]: E-rich region from 33 to 52 corrected with score 44
>SNEG-ZXX-01-000446 	gi|338733831|ref|YP_004672304.1| hypothetical protein SNE_A19360 [Simkania negevensis Z]: Q-rich region from 74 to 102 corrected with score 42
>SNEG-ZXX-01-000452 	gi|338733825|ref|YP_004672298.1| hypothetical protein SNE_A19300 [Simkania negevensis Z]: I-rich region from 273 to 316 corrected with score 49
>SNEG-ZXX-01-000454 	gi|338733823|ref|YP_004672296.1| hypothetical protein SNE_A19280 [Simkania negevensis Z]: G-rich region from 116 to 377 corrected with score 525
>SNEG-ZXX-01-000457 	gi|338733820|ref|YP_004672293.1| hypothetical protein SNE_A19250 [Simkania negevensis Z]: N-rich region from 2 to 20 corrected with score 40
>SNEG-ZXX-01-000462 	gi|338733815|ref|YP_004672288.1| hypothetical protein SNE_A19200 [Simkania negevensis Z]: C-rich region from 244 to 284 corrected with score 48
>SNEG-ZXX-01-000462 	gi|338733815|ref|YP_004672288.1| hypothetical protein SNE_A19200 [Simkania negevensis Z]: H-rich region from 76 to 81 corrected with score 40
>SNEG-ZXX-01-000504 	gi|338733773|ref|YP_004672246.1| peptide chain release factor 2 [Simkania negevensis Z]: E-rich region from 46 to 77 corrected with score 42
>SNEG-ZXX-01-000548 	gi|338733729|ref|YP_004672202.1| 30S ribosomal protein S14 [Simkania negevensis Z]: K-rich region from 3 to 65 corrected with score 41
>SNEG-ZXX-01-000565 	gi|338733712|ref|YP_004672185.1| hypothetical protein SNE_A18170 [Simkania negevensis Z]: S-rich region from 228 to 407 corrected with score 61
>SNEG-ZXX-01-000565 	gi|338733712|ref|YP_004672185.1| hypothetical protein SNE_A18170 [Simkania negevensis Z]: E-rich region from 171 to 196 corrected with score 55
>SNEG-ZXX-01-000576 	gi|338733701|ref|YP_004672174.1| 50S ribosomal protein L9 [Simkania negevensis Z]: E-rich region from 155 to 207 corrected with score 57
>SNEG-ZXX-01-000576 	gi|338733701|ref|YP_004672174.1| 50S ribosomal protein L9 [Simkania negevensis Z]: K-rich region from 40 to 93 corrected with score 42
>SNEG-ZXX-01-000585 	gi|338733692|ref|YP_004672165.1| hypothetical protein SNE_A17970 [Simkania negevensis Z]: Q-rich region from 139 to 376 corrected with score 106
>SNEG-ZXX-01-000588 	gi|338733689|ref|YP_004672162.1| hypothetical protein SNE_A17940 [Simkania negevensis Z]: K-rich region from 24 to 108 corrected with score 54
>SNEG-ZXX-01-000606 	gi|338733671|ref|YP_004672144.1| chaperone protein ClpB [Simkania negevensis Z]: E-rich region from 425 to 535 corrected with score 85
>SNEG-ZXX-01-000607 	gi|338733670|ref|YP_004672143.1| hypothetical protein SNE_A17750 [Simkania negevensis Z]: P-rich region from 118 to 148 corrected with score 60
>SNEG-ZXX-01-000615 	gi|338733662|ref|YP_004672135.1| negative regulator of type III secretion [Simkania negevensis Z]: E-rich region from 376 to 395 corrected with score 59
>SNEG-ZXX-01-000615 	gi|338733662|ref|YP_004672135.1| negative regulator of type III secretion [Simkania negevensis Z]: Q-rich region from 19 to 120 corrected with score 45
>SNEG-ZXX-01-000617 	gi|338733660|ref|YP_004672133.1| type III secretion integral inner membrane protein [Simkania negevensis Z]: I-rich region from 24 to 138 corrected with score 56
>SNEG-ZXX-01-000625 	gi|338733652|ref|YP_004672125.1| translation initiation factor IF-2 [Simkania negevensis Z]: K-rich region from 3 to 200 corrected with score 112
>SNEG-ZXX-01-000627 	gi|338733650|ref|YP_004672123.1| 30S ribosomal protein S1 [Simkania negevensis Z]: E-rich region from 496 to 528 corrected with score 65
>SNEG-ZXX-01-000633 	gi|338733644|ref|YP_004672117.1| hypothetical protein SNE_A17490 [Simkania negevensis Z]: E-rich region from 6 to 37 corrected with score 73
>SNEG-ZXX-01-000633 	gi|338733644|ref|YP_004672117.1| hypothetical protein SNE_A17490 [Simkania negevensis Z]: K-rich region from 6 to 37 corrected with score 41
>SNEG-ZXX-01-000656 	gi|338733621|ref|YP_004672094.1| Stage V sporulation protein E [Simkania negevensis Z]: M-rich region from 115 to 213 corrected with score 41
>SNEG-ZXX-01-000671 	gi|338733606|ref|YP_004672079.1| hypothetical protein SNE_A17110 [Simkania negevensis Z]: E-rich region from 278 to 520 corrected with score 97
>SNEG-ZXX-01-000671 	gi|338733606|ref|YP_004672079.1| hypothetical protein SNE_A17110 [Simkania negevensis Z]: E-rich region from 4 to 162 corrected with score 40
>SNEG-ZXX-01-000684 	gi|338733593|ref|YP_004672066.1| hypothetical protein SNE_A16980 [Simkania negevensis Z]: D-rich region from 83 to 102 corrected with score 40
>SNEG-ZXX-01-000697 	gi|338733580|ref|YP_004672053.1| hypothetical protein SNE_A16850 [Simkania negevensis Z]: P-rich region from 28 to 72 corrected with score 77
>SNEG-ZXX-01-000703 	gi|338733574|ref|YP_004672047.1| hypothetical protein SNE_A16790 [Simkania negevensis Z]: F-rich region from 168 to 204 corrected with score 56
>SNEG-ZXX-01-000719 	gi|338733558|ref|YP_004672031.1| presequence protease [Simkania negevensis Z]: E-rich region from 476 to 522 corrected with score 59
>SNEG-ZXX-01-000724 	gi|338733553|ref|YP_004672026.1| hypothetical protein SNE_A16580 [Simkania negevensis Z]: E-rich region from 65 to 115 corrected with score 42
>SNEG-ZXX-01-000728 	gi|338733549|ref|YP_004672022.1| CDP-diacylglycerol--serine O-phosphatidyltransferase [Simkania negevensis Z]: I-rich region from 183 to 260 corrected with score 40
>SNEG-ZXX-01-000730 	gi|338733547|ref|YP_004672020.1| DNA recombination protein rmuC-like protein [Simkania negevensis Z]: E-rich region from 33 to 172 corrected with score 66
>SNEG-ZXX-01-000736 	gi|338733541|ref|YP_004672014.1| hypothetical protein SNE_A16460 [Simkania negevensis Z]: E-rich region from 177 to 217 corrected with score 51
>SNEG-ZXX-01-000738 	gi|338733539|ref|YP_004672012.1| HTH-type transcriptional regulator skgA [Simkania negevensis Z]: E-rich region from 149 to 194 corrected with score 40
>SNEG-ZXX-01-000748 	gi|338733529|ref|YP_004672002.1| hypothetical protein SNE_A16340 [Simkania negevensis Z]: K-rich region from 65 to 140 corrected with score 71
>SNEG-ZXX-01-000749 	gi|338733528|ref|YP_004672001.1| ubiquinol oxidase subunit 2 [Simkania negevensis Z]: V-rich region from 7 to 68 corrected with score 42
>SNEG-ZXX-01-000759 	gi|338733518|ref|YP_004671991.1| ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]: K-rich region from 391 to 431 corrected with score 59
>SNEG-ZXX-01-000780 	gi|338733497|ref|YP_004671970.1| hypothetical protein SNE_A16020 [Simkania negevensis Z]: K-rich region from 59 to 108 corrected with score 40
>SNEG-ZXX-01-000807 	gi|338733470|ref|YP_004671943.1| caax amino protease family protein [Simkania negevensis Z]: L-rich region from 39 to 97 corrected with score 40
>SNEG-ZXX-01-000858 	gi|338733419|ref|YP_004671892.1| hypothetical protein SNE_A15240 [Simkania negevensis Z]: E-rich region from 160 to 199 corrected with score 41
>SNEG-ZXX-01-000861 	gi|338733416|ref|YP_004671889.1| hypothetical protein SNE_A15210 [Simkania negevensis Z]: V-rich region from 35 to 70 corrected with score 44
>SNEG-ZXX-01-000864 	gi|338733413|ref|YP_004671886.1| hypothetical protein SNE_A15180 [Simkania negevensis Z]: K-rich region from 5 to 54 corrected with score 53
>SNEG-ZXX-01-000869 	gi|338733408|ref|YP_004671881.1| 50S ribosomal protein L7/L12 [Simkania negevensis Z]: A-rich region from 39 to 64 corrected with score 49
>SNEG-ZXX-01-000880 	gi|338733397|ref|YP_004671870.1| 50S ribosomal protein L7/L12 [Simkania negevensis Z]: N-rich region from 11 to 83 corrected with score 47
>SNEG-ZXX-01-000888 	gi|338733389|ref|YP_004671862.1| v-type proton ATPase subunit E [Simkania negevensis Z]: K-rich region from 6 to 103 corrected with score 46
>SNEG-ZXX-01-000906 	gi|338733371|ref|YP_004671844.1| transporter [Simkania negevensis Z]: V-rich region from 170 to 241 corrected with score 44
>SNEG-ZXX-01-000910 	gi|338733367|ref|YP_004671840.1| polymorphic outer membrane protein B [Simkania negevensis Z]: T-rich region from 233 to 2135 corrected with score 654
>SNEG-ZXX-01-000918 	gi|338733359|ref|YP_004671832.1| hypothetical protein SNE_A14640 [Simkania negevensis Z]: S-rich region from 66 to 155 corrected with score 46
>SNEG-ZXX-01-000921 	gi|338733356|ref|YP_004671829.1| hypothetical protein SNE_A14610 [Simkania negevensis Z]: S-rich region from 162 to 250 corrected with score 64
>SNEG-ZXX-01-000923 	gi|338733354|ref|YP_004671827.1| type III secretion translocator protein [Simkania negevensis Z]: A-rich region from 133 to 387 corrected with score 86
>SNEG-ZXX-01-000923 	gi|338733354|ref|YP_004671827.1| type III secretion translocator protein [Simkania negevensis Z]: Q-rich region from 39 to 120 corrected with score 41
>SNEG-ZXX-01-000929 	gi|338733348|ref|YP_004671821.1| hypothetical protein SNE_A14530 [Simkania negevensis Z]: E-rich region from 104 to 122 corrected with score 43
>SNEG-ZXX-01-000943 	gi|338733334|ref|YP_004671807.1| isoamylase 3 [Simkania negevensis Z]: N-rich region from 439 to 461 corrected with score 40
>SNEG-ZXX-01-000946 	gi|338733331|ref|YP_004671804.1| hypothetical protein SNE_A14360 [Simkania negevensis Z]: E-rich region from 1151 to 1222 corrected with score 51
>SNEG-ZXX-01-000949 	gi|338733328|ref|YP_004671801.1| inner membrane protein oxaA [Simkania negevensis Z]: Q-rich region from 15 to 57 corrected with score 54
>SNEG-ZXX-01-000949 	gi|338733328|ref|YP_004671801.1| inner membrane protein oxaA [Simkania negevensis Z]: Q-rich region from 723 to 745 corrected with score 40
>SNEG-ZXX-01-000991 	gi|338733286|ref|YP_004671759.1| hypothetical protein SNE_A13910 [Simkania negevensis Z]: K-rich region from 3 to 60 corrected with score 50
>SNEG-ZXX-01-000997 	gi|338733280|ref|YP_004671753.1| hypothetical protein SNE_A13850 [Simkania negevensis Z]: A-rich region from 12 to 127 corrected with score 55
>SNEG-ZXX-01-000997 	gi|338733280|ref|YP_004671753.1| hypothetical protein SNE_A13850 [Simkania negevensis Z]: K-rich region from 133 to 217 corrected with score 47
>SNEG-ZXX-01-001003 	gi|338733274|ref|YP_004671747.1| protein lctB [Simkania negevensis Z]: I-rich region from 93 to 118 corrected with score 42
>SNEG-ZXX-01-001006 	gi|338733271|ref|YP_004671744.1| hypothetical protein SNE_A13760 [Simkania negevensis Z]: E-rich region from 4 to 36 corrected with score 53
>SNEG-ZXX-01-001017 	gi|338733260|ref|YP_004671733.1| hypothetical protein SNE_A13650 [Simkania negevensis Z]: H-rich region from 93 to 177 corrected with score 65
>SNEG-ZXX-01-001017 	gi|338733260|ref|YP_004671733.1| hypothetical protein SNE_A13650 [Simkania negevensis Z]: N-rich region from 99 to 147 corrected with score 48
>SNEG-ZXX-01-001017 	gi|338733260|ref|YP_004671733.1| hypothetical protein SNE_A13650 [Simkania negevensis Z]: W-rich region from 83 to 131 corrected with score 41
>SNEG-ZXX-01-001019 	gi|338733258|ref|YP_004671731.1| hypothetical protein SNE_A13630 [Simkania negevensis Z]: Q-rich region from 248 to 295 corrected with score 45
>SNEG-ZXX-01-001022 	gi|338733255|ref|YP_004671728.1| hypothetical protein SNE_A13600 [Simkania negevensis Z]: A-rich region from 418 to 458 corrected with score 43
>SNEG-ZXX-01-001036 	gi|338733241|ref|YP_004671714.1| hypothetical protein SNE_A13460 [Simkania negevensis Z]: Q-rich region from 593 to 732 corrected with score 66
>SNEG-ZXX-01-001039 	gi|338733238|ref|YP_004671711.1| hypothetical protein SNE_A13430 [Simkania negevensis Z]: K-rich region from 478 to 513 corrected with score 43
>SNEG-ZXX-01-001048 	gi|338733229|ref|YP_004671702.1| hypothetical protein SNE_A13340 [Simkania negevensis Z]: T-rich region from 46 to 144 corrected with score 42
>SNEG-ZXX-01-001049 	gi|338733228|ref|YP_004671701.1| hypothetical protein SNE_A13330 [Simkania negevensis Z]: S-rich region from 393 to 463 corrected with score 40
>SNEG-ZXX-01-001050 	gi|338733227|ref|YP_004671700.1| hypothetical protein SNE_A13320 [Simkania negevensis Z]: E-rich region from 378 to 473 corrected with score 42
>SNEG-ZXX-01-001053 	gi|338733224|ref|YP_004671697.1| plasmid maintenance system antidote protein, XRE family [Simkania negevensis Z]: K-rich region from 4 to 54 corrected with score 46
>SNEG-ZXX-01-001058 	gi|338733219|ref|YP_004671692.1| hypothetical protein SNE_A13240 [Simkania negevensis Z]: G-rich region from 83 to 112 corrected with score 49
>SNEG-ZXX-01-001090 	gi|338733187|ref|YP_004671660.1| hypothetical protein SNE_A12920 [Simkania negevensis Z]: Q-rich region from 77 to 130 corrected with score 40
>SNEG-ZXX-01-001093 	gi|338733184|ref|YP_004671657.1| hypothetical protein SNE_A12890 [Simkania negevensis Z]: P-rich region from 216 to 228 corrected with score 40
>SNEG-ZXX-01-001114 	gi|338733163|ref|YP_004671636.1| ABC transporter ATP-binding protein [Simkania negevensis Z]: K-rich region from 240 to 327 corrected with score 41
>SNEG-ZXX-01-001160 	gi|338733117|ref|YP_004671590.1| hypothetical protein SNE_A12220 [Simkania negevensis Z]: E-rich region from 156 to 182 corrected with score 51
>SNEG-ZXX-01-001171 	gi|338733106|ref|YP_004671579.1| hypothetical protein SNE_A12110 [Simkania negevensis Z]: S-rich region from 935 to 1054 corrected with score 40
>SNEG-ZXX-01-001172 	gi|338733105|ref|YP_004671578.1| hypothetical protein SNE_A12100 [Simkania negevensis Z]: I-rich region from 1 to 70 corrected with score 52
>SNEG-ZXX-01-001186 	gi|338733091|ref|YP_004671564.1| hypothetical protein SNE_A11960 [Simkania negevensis Z]: W-rich region from 56 to 67 corrected with score 44
>SNEG-ZXX-01-001200 	gi|338733077|ref|YP_004671550.1| hypothetical protein SNE_A11820 [Simkania negevensis Z]: P-rich region from 72 to 132 corrected with score 59
>SNEG-ZXX-01-001200 	gi|338733077|ref|YP_004671550.1| hypothetical protein SNE_A11820 [Simkania negevensis Z]: S-rich region from 136 to 221 corrected with score 59
>SNEG-ZXX-01-001209 	gi|338733068|ref|YP_004671541.1| membrane protein yvlC [Simkania negevensis Z]: I-rich region from 30 to 58 corrected with score 43
>SNEG-ZXX-01-001216 	gi|338733061|ref|YP_004671534.1| hypothetical protein SNE_A11660 [Simkania negevensis Z]: K-rich region from 1303 to 1334 corrected with score 44
>SNEG-ZXX-01-001238 	gi|338733039|ref|YP_004671512.1| major facilitator family transporter [Simkania negevensis Z]: E-rich region from 403 to 434 corrected with score 56
>SNEG-ZXX-01-001256 	gi|338733021|ref|YP_004671494.1| hypothetical protein SNE_A11260 [Simkania negevensis Z]: E-rich region from 277 to 320 corrected with score 43
>SNEG-ZXX-01-001260 	gi|338733017|ref|YP_004671490.1| multidrug resistance protein MdtB [Simkania negevensis Z]: I-rich region from 341 to 410 corrected with score 45
>SNEG-ZXX-01-001263 	gi|338733014|ref|YP_004671487.1| hypothetical protein SNE_A11190 [Simkania negevensis Z]: E-rich region from 574 to 617 corrected with score 44
>SNEG-ZXX-01-001269 	gi|338733008|ref|YP_004671481.1| hypothetical protein SNE_A11130 [Simkania negevensis Z]: S-rich region from 106 to 166 corrected with score 57
>SNEG-ZXX-01-001270 	gi|338733007|ref|YP_004671480.1| hypothetical protein SNE_A11120 [Simkania negevensis Z]: S-rich region from 514 to 703 corrected with score 40
>SNEG-ZXX-01-001273 	gi|338733004|ref|YP_004671477.1| dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Simkania negevensis Z]: P-rich region from 77 to 142 corrected with score 56
>SNEG-ZXX-01-001276 	gi|338733001|ref|YP_004671474.1| hypothetical protein SNE_A11060 [Simkania negevensis Z]: E-rich region from 28 to 132 corrected with score 61
>SNEG-ZXX-01-001281 	gi|338732996|ref|YP_004671469.1| hypothetical protein SNE_A11010 [Simkania negevensis Z]: K-rich region from 8 to 126 corrected with score 163
>SNEG-ZXX-01-001290 	gi|338732987|ref|YP_004671460.1| hypothetical protein SNE_A10920 [Simkania negevensis Z]: K-rich region from 30 to 108 corrected with score 47
>SNEG-ZXX-01-001293 	gi|338732984|ref|YP_004671457.1| putative membrane-bound serine protease [Simkania negevensis Z]: L-rich region from 542 to 645 corrected with score 44
>SNEG-ZXX-01-001297 	gi|338732980|ref|YP_004671453.1| hypothetical protein SNE_A10850 [Simkania negevensis Z]: P-rich region from 51 to 74 corrected with score 54
>SNEG-ZXX-01-001298 	gi|338732979|ref|YP_004671452.1| hypothetical protein SNE_A10840 [Simkania negevensis Z]: Q-rich region from 404 to 463 corrected with score 47
>SNEG-ZXX-01-001322 	gi|338732955|ref|YP_004671428.1| arsenical pump membrane protein [Simkania negevensis Z]: L-rich region from 187 to 259 corrected with score 41
>SNEG-ZXX-01-001328 	gi|338732949|ref|YP_004671422.1| tetracycline-efflux transporter [Simkania negevensis Z]: F-rich region from 228 to 257 corrected with score 48
>SNEG-ZXX-01-001340 	gi|338732937|ref|YP_004671410.1| hypothetical protein SNE_A10420 [Simkania negevensis Z]: E-rich region from 22 to 157 corrected with score 166
>SNEG-ZXX-01-001342 	gi|338732935|ref|YP_004671408.1| putative peptide chain release factor 1 [Simkania negevensis Z]: K-rich region from 59 to 136 corrected with score 82
>SNEG-ZXX-01-001369 	gi|338732908|ref|YP_004671381.1| hypothetical protein SNE_A10130 [Simkania negevensis Z]: K-rich region from 395 to 420 corrected with score 62
>SNEG-ZXX-01-001371 	gi|338732906|ref|YP_004671379.1| hypothetical protein SNE_A10110 [Simkania negevensis Z]: K-rich region from 3 to 45 corrected with score 52
>SNEG-ZXX-01-001372 	gi|338732905|ref|YP_004671378.1| hypothetical protein SNE_A10100 [Simkania negevensis Z]: F-rich region from 28 to 120 corrected with score 42
>SNEG-ZXX-01-001382 	gi|338732895|ref|YP_004671368.1| hypothetical protein SNE_A10000 [Simkania negevensis Z]: K-rich region from 1552 to 1618 corrected with score 40
>SNEG-ZXX-01-001397 	gi|338732880|ref|YP_004671353.1| hypothetical protein SNE_A09850 [Simkania negevensis Z]: K-rich region from 4 to 102 corrected with score 154
>SNEG-ZXX-01-001397 	gi|338732880|ref|YP_004671353.1| hypothetical protein SNE_A09850 [Simkania negevensis Z]: A-rich region from 9 to 101 corrected with score 56
>SNEG-ZXX-01-001397 	gi|338732880|ref|YP_004671353.1| hypothetical protein SNE_A09850 [Simkania negevensis Z]: R-rich region from 4 to 96 corrected with score 44
>SNEG-ZXX-01-001399 	gi|338732878|ref|YP_004671351.1| ABC transporter ATP-binding protein [Simkania negevensis Z]: E-rich region from 530 to 631 corrected with score 51
>SNEG-ZXX-01-001399 	gi|338732878|ref|YP_004671351.1| ABC transporter ATP-binding protein [Simkania negevensis Z]: K-rich region from 243 to 298 corrected with score 43
>SNEG-ZXX-01-001449 	gi|338732828|ref|YP_004671301.1| thiamine biosynthesis lipoprotein ApbE [Simkania negevensis Z]: H-rich region from 22 to 44 corrected with score 45
>SNEG-ZXX-01-001456 	gi|338732821|ref|YP_004671294.1| hypothetical protein SNE_A09260 [Simkania negevensis Z]: K-rich region from 2 to 67 corrected with score 40
>SNEG-ZXX-01-001463 	gi|338732814|ref|YP_004671287.1| hypothetical protein SNE_A09190 [Simkania negevensis Z]: H-rich region from 102 to 132 corrected with score 48
>SNEG-ZXX-01-001464 	gi|338732813|ref|YP_004671286.1| ribonuclease R [Simkania negevensis Z]: K-rich region from 645 to 673 corrected with score 62
>SNEG-ZXX-01-001467 	gi|338732810|ref|YP_004671283.1| hypothetical protein SNE_A09150 [Simkania negevensis Z]: I-rich region from 55 to 78 corrected with score 45
>SNEG-ZXX-01-001492 	gi|338732785|ref|YP_004671258.1| exodeoxyribonuclease 7 large subunit [Simkania negevensis Z]: K-rich region from 334 to 427 corrected with score 54
>SNEG-ZXX-01-001501 	gi|338732776|ref|YP_004671249.1| cytochrome d ubiquinol oxidase subunit 2 [Simkania negevensis Z]: M-rich region from 200 to 242 corrected with score 40
>SNEG-ZXX-01-001505 	gi|338732772|ref|YP_004671245.1| hypothetical protein SNE_A08770 [Simkania negevensis Z]: L-rich region from 25 to 101 corrected with score 40
>SNEG-ZXX-01-001518 	gi|338732759|ref|YP_004671232.1| hypothetical protein SNE_A08640 [Simkania negevensis Z]: P-rich region from 123 to 171 corrected with score 58
>SNEG-ZXX-01-001538 	gi|338732739|ref|YP_004671212.1| prolipoprotein diacylglyceryl transferase [Simkania negevensis Z]: F-rich region from 279 to 319 corrected with score 57
>SNEG-ZXX-01-001541 	gi|338732736|ref|YP_004671209.1| hypothetical protein SNE_A08410 [Simkania negevensis Z]: E-rich region from 319 to 350 corrected with score 46
>SNEG-ZXX-01-001554 	gi|338732723|ref|YP_004671196.1| putative acyl-CoA desaturase [Simkania negevensis Z]: K-rich region from 327 to 363 corrected with score 40
>SNEG-ZXX-01-001561 	gi|338732716|ref|YP_004671189.1| hypothetical protein SNE_A08210 [Simkania negevensis Z]: P-rich region from 126 to 233 corrected with score 123
>SNEG-ZXX-01-001569 	gi|338732708|ref|YP_004671181.1| hypothetical protein SNE_A08130 [Simkania negevensis Z]: Q-rich region from 179 to 243 corrected with score 56
>SNEG-ZXX-01-001582 	gi|338732695|ref|YP_004671168.1| hypothetical protein SNE_A08000 [Simkania negevensis Z]: E-rich region from 31 to 83 corrected with score 53
>SNEG-ZXX-01-001622 	gi|338732655|ref|YP_004671128.1| 50S ribosomal protein L19 [Simkania negevensis Z]: K-rich region from 90 to 175 corrected with score 76
>SNEG-ZXX-01-001622 	gi|338732655|ref|YP_004671128.1| 50S ribosomal protein L19 [Simkania negevensis Z]: E-rich region from 126 to 175 corrected with score 40
>SNEG-ZXX-01-001624 	gi|338732653|ref|YP_004671126.1| 30S ribosomal protein S16 [Simkania negevensis Z]: K-rich region from 84 to 105 corrected with score 51
>SNEG-ZXX-01-001629 	gi|338732648|ref|YP_004671121.1| 50S ribosomal protein L31 type B [Simkania negevensis Z]: K-rich region from 44 to 82 corrected with score 79
>SNEG-ZXX-01-001646 	gi|338732631|ref|YP_004671104.1| ATP-dependent zinc metalloprotease FtsH [Simkania negevensis Z]: P-rich region from 918 to 923 corrected with score 42
>SNEG-ZXX-01-001676 	gi|338732601|ref|YP_004671074.1| hypothetical protein SNE_A07060 [Simkania negevensis Z]: L-rich region from 23 to 248 corrected with score 59
>SNEG-ZXX-01-001718 	gi|338732559|ref|YP_004671032.1| secretion protein HlyD family protein [Simkania negevensis Z]: P-rich region from 29 to 42 corrected with score 52
>SNEG-ZXX-01-001724 	gi|338732553|ref|YP_004671026.1| hypothetical protein SNE_A06580 [Simkania negevensis Z]: V-rich region from 86 to 176 corrected with score 51
>SNEG-ZXX-01-001750 	gi|338732527|ref|YP_004671000.1| hypothetical protein SNE_A06320 [Simkania negevensis Z]: K-rich region from 2 to 52 corrected with score 47
>SNEG-ZXX-01-001801 	gi|338732476|ref|YP_004670949.1| hypothetical protein SNE_A05810 [Simkania negevensis Z]: K-rich region from 2 to 111 corrected with score 64
>SNEG-ZXX-01-001812 	gi|338732465|ref|YP_004670938.1| DNA polymerase III subunit gamma/tau [Simkania negevensis Z]: P-rich region from 421 to 456 corrected with score 52
>SNEG-ZXX-01-001824 	gi|338732453|ref|YP_004670926.1| hypothetical protein SNE_A05580 [Simkania negevensis Z]: L-rich region from 368 to 444 corrected with score 69
>SNEG-ZXX-01-001832 	gi|338732445|ref|YP_004670918.1| hypothetical protein SNE_A05500 [Simkania negevensis Z]: A-rich region from 18 to 146 corrected with score 63
>SNEG-ZXX-01-001836 	gi|338732441|ref|YP_004670914.1| hypothetical protein SNE_A05460 [Simkania negevensis Z]: K-rich region from 335 to 369 corrected with score 53
>SNEG-ZXX-01-001839 	gi|338732438|ref|YP_004670911.1| hypothetical protein SNE_A05430 [Simkania negevensis Z]: A-rich region from 249 to 299 corrected with score 41
>SNEG-ZXX-01-001848 	gi|338732429|ref|YP_004670902.1| protein grpE [Simkania negevensis Z]: E-rich region from 2 to 194 corrected with score 53
>SNEG-ZXX-01-001849 	gi|338732428|ref|YP_004670901.1| heat shock protein 70 [Simkania negevensis Z]: E-rich region from 492 to 643 corrected with score 79
>SNEG-ZXX-01-001861 	gi|338732416|ref|YP_004670889.1| hypothetical protein SNE_A05210 [Simkania negevensis Z]: T-rich region from 510 to 566 corrected with score 48
>SNEG-ZXX-01-001862 	gi|338732415|ref|YP_004670888.1| polymorphic outer membrane protein B [Simkania negevensis Z]: S-rich region from 18 to 1320 corrected with score 317
>SNEG-ZXX-01-001862 	gi|338732415|ref|YP_004670888.1| polymorphic outer membrane protein B [Simkania negevensis Z]: T-rich region from 685 to 863 corrected with score 60
>SNEG-ZXX-01-001864 	gi|338732413|ref|YP_004670886.1| hypothetical protein SNE_A05180 [Simkania negevensis Z]: E-rich region from 39 to 105 corrected with score 118
>SNEG-ZXX-01-001864 	gi|338732413|ref|YP_004670886.1| hypothetical protein SNE_A05180 [Simkania negevensis Z]: R-rich region from 44 to 105 corrected with score 55
>SNEG-ZXX-01-001873 	gi|338732404|ref|YP_004670877.1| MOMP-like family protein [Simkania negevensis Z]: S-rich region from 24 to 80 corrected with score 43
>SNEG-ZXX-01-001873 	gi|338732404|ref|YP_004670877.1| MOMP-like family protein [Simkania negevensis Z]: W-rich region from 361 to 383 corrected with score 41
>SNEG-ZXX-01-001877 	gi|338732400|ref|YP_004670873.1| elongation factor 4 [Simkania negevensis Z]: K-rich region from 566 to 587 corrected with score 41
>SNEG-ZXX-01-001889 	gi|338732388|ref|YP_004670861.1| hypothetical protein SNE_A04930 [Simkania negevensis Z]: E-rich region from 94 to 143 corrected with score 53
>SNEG-ZXX-01-001909 	gi|338732368|ref|YP_004670841.1| putative Na(>)-translocating NADH-quinone reductase subunit D [Simkania negevensis Z]: V-rich region from 17 to 111 corrected with score 48
>SNEG-ZXX-01-001925 	gi|338732352|ref|YP_004670825.1| hypothetical protein SNE_A04570 [Simkania negevensis Z]: P-rich region from 68 to 80 corrected with score 48
>SNEG-ZXX-01-001928 	gi|338732349|ref|YP_004670822.1| putative ATP-dependent Clp protease ATP-binding subunit [Simkania negevensis Z]: E-rich region from 425 to 492 corrected with score 58
>SNEG-ZXX-01-001928 	gi|338732349|ref|YP_004670822.1| putative ATP-dependent Clp protease ATP-binding subunit [Simkania negevensis Z]: E-rich region from 787 to 851 corrected with score 50
>SNEG-ZXX-01-001928 	gi|338732349|ref|YP_004670822.1| putative ATP-dependent Clp protease ATP-binding subunit [Simkania negevensis Z]: K-rich region from 820 to 835 corrected with score 40
>SNEG-ZXX-01-001933 	gi|338732344|ref|YP_004670817.1| acrB/AcrD/AcrF family protein [Simkania negevensis Z]: I-rich region from 340 to 411 corrected with score 54
>SNEG-ZXX-01-001938 	gi|338732339|ref|YP_004670812.1| hypothetical protein SNE_A04440 [Simkania negevensis Z]: Q-rich region from 200 to 250 corrected with score 42
>SNEG-ZXX-01-001941 	gi|338732336|ref|YP_004670809.1| succinylglutamate desuccinylase/aspartoacylase family protein [Simkania negevensis Z]: P-rich region from 320 to 334 corrected with score 43
>SNEG-ZXX-01-001951 	gi|338732326|ref|YP_004670799.1| hypothetical protein SNE_A04310 [Simkania negevensis Z]: L-rich region from 87 to 163 corrected with score 64
>SNEG-ZXX-01-001953 	gi|338732324|ref|YP_004670797.1| hypothetical protein SNE_A04290 [Simkania negevensis Z]: T-rich region from 12 to 26 corrected with score 44
>SNEG-ZXX-01-001953 	gi|338732324|ref|YP_004670797.1| hypothetical protein SNE_A04290 [Simkania negevensis Z]: Q-rich region from 208 to 301 corrected with score 43
>SNEG-ZXX-01-001954 	gi|338732323|ref|YP_004670796.1| hypothetical protein SNE_A04280 [Simkania negevensis Z]: S-rich region from 2 to 83 corrected with score 53
>SNEG-ZXX-01-001956 	gi|338732321|ref|YP_004670794.1| hypothetical protein SNE_A04260 [Simkania negevensis Z]: Q-rich region from 158 to 228 corrected with score 45
>SNEG-ZXX-01-001956 	gi|338732321|ref|YP_004670794.1| hypothetical protein SNE_A04260 [Simkania negevensis Z]: E-rich region from 66 to 114 corrected with score 40
>SNEG-ZXX-01-001966 	gi|338732311|ref|YP_004670784.1| hypothetical protein SNE_A04160 [Simkania negevensis Z]: S-rich region from 391 to 463 corrected with score 41
>SNEG-ZXX-01-001975 	gi|338732302|ref|YP_004670775.1| hypothetical protein SNE_A04070 [Simkania negevensis Z]: E-rich region from 111 to 215 corrected with score 69
>SNEG-ZXX-01-001976 	gi|338732301|ref|YP_004670774.1| hypothetical protein SNE_A04060 [Simkania negevensis Z]: T-rich region from 2 to 63 corrected with score 40
>SNEG-ZXX-01-001986 	gi|338732291|ref|YP_004670764.1| hypothetical protein SNE_A03960 [Simkania negevensis Z]: E-rich region from 53 to 197 corrected with score 45
>SNEG-ZXX-01-001994 	gi|338732283|ref|YP_004670756.1| hypothetical protein SNE_A03880 [Simkania negevensis Z]: E-rich region from 374 to 1218 corrected with score 484
>SNEG-ZXX-01-001997 	gi|338732280|ref|YP_004670753.1| histone-like developmental protein [Simkania negevensis Z]: K-rich region from 22 to 91 corrected with score 72
>SNEG-ZXX-01-002017 	gi|338732260|ref|YP_004670733.1| putative RNA-binding protein rbpA [Simkania negevensis Z]: G-rich region from 108 to 134 corrected with score 92
>SNEG-ZXX-01-002031 	gi|338732246|ref|YP_004670719.1| putative metal transport system membrane protein [Simkania negevensis Z]: V-rich region from 194 to 250 corrected with score 56
>SNEG-ZXX-01-002049 	gi|338732228|ref|YP_004670701.1| HTH-type transcriptional regulator skgA [Simkania negevensis Z]: K-rich region from 88 to 168 corrected with score 42
>SNEG-ZXX-01-002078 	gi|338732199|ref|YP_004670672.1| putative phosphate permease [Simkania negevensis Z]: L-rich region from 151 to 234 corrected with score 45
>SNEG-ZXX-01-002092 	gi|338732185|ref|YP_004670658.1| type III secretion integral inner membrane protein [Simkania negevensis Z]: L-rich region from 231 to 285 corrected with score 42
>SNEG-ZXX-01-002104 	gi|338732173|ref|YP_004670646.1| MOMP-like family protein [Simkania negevensis Z]: S-rich region from 18 to 55 corrected with score 42
>SNEG-ZXX-01-002110 	gi|338732167|ref|YP_004670640.1| hypothetical protein SNE_A02720 [Simkania negevensis Z]: S-rich region from 29 to 84 corrected with score 44
>SNEG-ZXX-01-002134 	gi|338732143|ref|YP_004670616.1| hypothetical protein SNE_A02480 [Simkania negevensis Z]: Q-rich region from 27 to 164 corrected with score 121
>SNEG-ZXX-01-002141 	gi|338732136|ref|YP_004670609.1| ribosome-recycling factor [Simkania negevensis Z]: K-rich region from 105 to 153 corrected with score 54
>SNEG-ZXX-01-002144 	gi|338732133|ref|YP_004670606.1| 30S ribosomal protein S2 [Simkania negevensis Z]: E-rich region from 235 to 267 corrected with score 71
>SNEG-ZXX-01-002146 	gi|338732131|ref|YP_004670604.1| hypothetical protein SNE_A02360 [Simkania negevensis Z]: P-rich region from 92 to 111 corrected with score 44
>SNEG-ZXX-01-002150 	gi|338732127|ref|YP_004670600.1| hypothetical protein SNE_A02320 [Simkania negevensis Z]: Q-rich region from 582 to 740 corrected with score 40
>SNEG-ZXX-01-002156 	gi|338732121|ref|YP_004670594.1| MOMP-like family protein [Simkania negevensis Z]: S-rich region from 15 to 130 corrected with score 41
>SNEG-ZXX-01-002175 	gi|338732102|ref|YP_004670575.1| protein translocase subunit secA [Simkania negevensis Z]: E-rich region from 285 to 442 corrected with score 62
>SNEG-ZXX-01-002182 	gi|338732095|ref|YP_004670568.1| hypothetical protein SNE_A02000 [Simkania negevensis Z]: P-rich region from 96 to 121 corrected with score 44
>SNEG-ZXX-01-002246 	gi|338732031|ref|YP_004670504.1| hypothetical protein SNE_A01360 [Simkania negevensis Z]: E-rich region from 176 to 232 corrected with score 41
>SNEG-ZXX-01-002255 	gi|338732022|ref|YP_004670495.1| putative TolA protein of Tol-Pal system [Simkania negevensis Z]: P-rich region from 54 to 95 corrected with score 50
>SNEG-ZXX-01-002255 	gi|338732022|ref|YP_004670495.1| putative TolA protein of Tol-Pal system [Simkania negevensis Z]: K-rich region from 54 to 135 corrected with score 42
>SNEG-ZXX-01-002261 	gi|338732016|ref|YP_004670489.1| hypothetical protein SNE_A01200 [Simkania negevensis Z]: G-rich region from 26 to 61 corrected with score 69
>SNEG-ZXX-01-002282 	gi|338731995|ref|YP_004670468.1| hypothetical protein SNE_A00990 [Simkania negevensis Z]: P-rich region from 399 to 437 corrected with score 72
>SNEG-ZXX-01-002282 	gi|338731995|ref|YP_004670468.1| hypothetical protein SNE_A00990 [Simkania negevensis Z]: E-rich region from 28 to 124 corrected with score 56
>SNEG-ZXX-01-002294 	gi|338731983|ref|YP_004670456.1| glycine betaine/carnitine/choline transport system permease opuCB [Simkania negevensis Z]: L-rich region from 1 to 99 corrected with score 41
>SNEG-ZXX-01-002305 	gi|338731972|ref|YP_004670445.1| hypothetical protein SNE_A00760 [Simkania negevensis Z]: K-rich region from 82 to 149 corrected with score 45
>SNEG-ZXX-01-002306 	gi|338731971|ref|YP_004670444.1| MOMP-like family protein [Simkania negevensis Z]: Y-rich region from 286 to 323 corrected with score 42
>SNEG-ZXX-01-002318 	gi|338731959|ref|YP_004670432.1| polymorphic outer membrane protein B [Simkania negevensis Z]: T-rich region from 41 to 1081 corrected with score 204
>SNEG-ZXX-01-002318 	gi|338731959|ref|YP_004670432.1| polymorphic outer membrane protein B [Simkania negevensis Z]: N-rich region from 175 to 265 corrected with score 41
>SNEG-ZXX-01-002327 	gi|338731950|ref|YP_004670423.1| hypothetical protein SNE_A00540 [Simkania negevensis Z]: A-rich region from 415 to 455 corrected with score 40
>SNEG-ZXX-01-002343 	gi|338731934|ref|YP_004670407.1| hypothetical protein SNE_A00380 [Simkania negevensis Z]: T-rich region from 705 to 910 corrected with score 56
>SNEG-ZXX-01-002352 	gi|338731925|ref|YP_004670398.1| hypothetical protein SNE_A00290 [Simkania negevensis Z]: A-rich region from 193 to 227 corrected with score 40
>SNEG-ZXX-01-002359 	gi|338731918|ref|YP_004670391.1| exodeoxyribonuclease V subunit beta [Simkania negevensis Z]: P-rich region from 799 to 850 corrected with score 40
>SNEG-ZXX-01-002380 	gi|338731897|ref|YP_004670370.1| hypothetical protein SNE_A00010 [Simkania negevensis Z]: I-rich region from 75 to 124 corrected with score 44
>SNEG-ZXX-01-002384 	gi|338731892|ref|YP_004663011.1| hypothetical protein SNE_B25160 [Simkania negevensis Z]: Q-rich region from 12 to 89 corrected with score 49
>SNEG-ZXX-01-002423 	gi|338731853|ref|YP_004662972.1| conjugal transfer pore protein TraB [Simkania negevensis Z]: K-rich region from 3 to 32 corrected with score 43
>SNEG-ZXX-01-002434 	gi|338731842|ref|YP_004662961.1| conjugal transfer disulfide-bond formation protein TraF [Simkania negevensis Z]: E-rich region from 32 to 69 corrected with score 42
>SNEG-ZXX-01-002436 	gi|338731840|ref|YP_004662959.1| conjugal transfer mating pair stabilisation protein TraG [Simkania negevensis Z]: S-rich region from 483 to 770 corrected with score 96
>SNEG-ZXX-01-002460 	gi|338731816|ref|YP_004662935.1| cation efflux system protein CusA [Simkania negevensis Z]: I-rich region from 346 to 410 corrected with score 42
>SNEG-ZXX-01-002466 	gi|338731810|ref|YP_004662929.1| hypothetical protein SNE_B24340 [Simkania negevensis Z]: D-rich region from 325 to 343 corrected with score 43
>SNEG-ZXX-01-002473 	gi|338731803|ref|YP_004662922.1| conjugal transfer protein TraD [Simkania negevensis Z]: K-rich region from 6 to 37 corrected with score 42
>SNEG-ZXX-01-002478 	gi|338731798|ref|YP_004662917.1| hypothetical protein SNE_B24220 [Simkania negevensis Z]: E-rich region from 70 to 235 corrected with score 58
>SNEG-ZXX-01-002500 	gi|338731776|ref|YP_004662895.1| hypothetical protein SNE_B24000 [Simkania negevensis Z]: D-rich region from 290 to 300 corrected with score 41
>SNEG-ZXX-01-002505 	gi|338731771|ref|YP_004662890.1| hypothetical protein SNE_B23950 [Simkania negevensis Z]: A-rich region from 435 to 475 corrected with score 43
>SNEG-ZXX-01-002515 	gi|338731761|ref|YP_004662880.1| hypothetical protein SNE_B23850 [Simkania negevensis Z]: Q-rich region from 213 to 293 corrected with score 56
>SNEG-ZXX-01-002517 	gi|338731759|ref|YP_004662878.1| hypothetical protein SNE_B23830 [Simkania negevensis Z]: A-rich region from 167 to 205 corrected with score 65
>WCHO-203-01-000002 	gi|337294313|emb|CCB92294.1| hypothetical protein WCH_CD13970 [Waddlia chondrophila 2032/99]: K-rich region from 18 to 68 corrected with score 43
>WCHO-203-01-000012 	gi|337294301|emb|CCB92284.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 145 to 201 corrected with score 41
>WCHO-203-01-000023 	gi|337294290|emb|CCB92273.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 65 to 102 corrected with score 40
>WCHO-203-01-000041 	gi|337294272|emb|CCB92255.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 252 to 512 corrected with score 112
>WCHO-203-01-000055 	gi|337294257|emb|CCB92241.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: Q-rich region from 46 to 439 corrected with score 206
>WCHO-203-01-000055 	gi|337294257|emb|CCB92241.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 264 to 434 corrected with score 84
>WCHO-203-01-000069 	gi|337294243|emb|CCB92227.1| unknown protein [Waddlia chondrophila 2032/99]: K-rich region from 5 to 29 corrected with score 62
>WCHO-203-01-000072 	gi|337294240|emb|CCB92224.1| putative metal transport system membrane protein CPn_0543/CP_0209/CPj0543/CpB0565 [Waddlia chondrophila 2032/99]: I-rich region from 143 to 236 corrected with score 46
>WCHO-203-01-000127 	gi|337294185|emb|CCB92169.1| DNA topoisomerase 1 [Waddlia chondrophila 2032/99]: K-rich region from 747 to 775 corrected with score 60
>WCHO-203-01-000141 	gi|337294171|emb|CCB92155.1| ADP,ATP carrier protein 1 [Waddlia chondrophila 2032/99]: F-rich region from 106 to 125 corrected with score 40
>WCHO-203-01-000150 	gi|337294162|emb|CCB92146.1| Tail-specific protease [Waddlia chondrophila 2032/99]: E-rich region from 125 to 199 corrected with score 46
>WCHO-203-01-000164 	gi|337294147|emb|CCB92132.1| trk system potassium uptake protein trkG [Waddlia chondrophila 2032/99]: F-rich region from 13 to 37 corrected with score 55
>WCHO-203-01-000173 	gi|337294138|emb|CCB92123.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 512 to 663 corrected with score 88
>WCHO-203-01-000174 	gi|337294137|emb|CCB92122.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 163 to 213 corrected with score 46
>WCHO-203-01-000174 	gi|337294137|emb|CCB92122.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 19 to 72 corrected with score 45
>WCHO-203-01-000179 	gi|337294132|emb|CCB92117.1| 50S ribosomal protein L21 [Waddlia chondrophila 2032/99]: K-rich region from 106 to 127 corrected with score 44
>WCHO-203-01-000181 	gi|337294130|emb|CCB92115.1| GTPase obg [Waddlia chondrophila 2032/99]: G-rich region from 31 to 43 corrected with score 44
>WCHO-203-01-000188 	gi|337294123|emb|CCB92108.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: L-rich region from 88 to 105 corrected with score 41
>WCHO-203-01-000190 	gi|337294121|emb|CCB92106.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 735 to 914 corrected with score 44
>WCHO-203-01-000190 	gi|337294121|emb|CCB92106.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 1966 to 2019 corrected with score 41
>WCHO-203-01-000190 	gi|337294121|emb|CCB92106.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 2262 to 2325 corrected with score 41
>WCHO-203-01-000192 	gi|337294119|emb|CCB92104.1| heat shock protein 70 [Waddlia chondrophila 2032/99]: E-rich region from 494 to 644 corrected with score 70
>WCHO-203-01-000201 	gi|337294110|emb|CCB92095.1| inclusion protein [Waddlia chondrophila 2032/99]: E-rich region from 179 to 1051 corrected with score 251
>WCHO-203-01-000210 	gi|337294101|emb|CCB92086.1| putative type III secretion translocase SctQ [Waddlia chondrophila 2032/99]: E-rich region from 7 to 86 corrected with score 163
>WCHO-203-01-000210 	gi|337294101|emb|CCB92086.1| putative type III secretion translocase SctQ [Waddlia chondrophila 2032/99]: D-rich region from 11 to 52 corrected with score 60
>WCHO-203-01-000212 	gi|337294099|emb|CCB92084.1| type III secretion basal body protein [Waddlia chondrophila 2032/99]: E-rich region from 336 to 370 corrected with score 59
>WCHO-203-01-000212 	gi|337294099|emb|CCB92084.1| type III secretion basal body protein [Waddlia chondrophila 2032/99]: E-rich region from 13 to 123 corrected with score 51
>WCHO-203-01-000213 	gi|337294098|emb|CCB92083.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 9 to 151 corrected with score 93
>WCHO-203-01-000213 	gi|337294098|emb|CCB92083.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 15 to 139 corrected with score 41
>WCHO-203-01-000219 	gi|337294092|emb|CCB92077.1| type III secretion needle formation regulating protein [Waddlia chondrophila 2032/99]: K-rich region from 8 to 58 corrected with score 47
>WCHO-203-01-000220 	gi|337294091|emb|CCB92076.1| type III secretion integral inner membrane ring protein [Waddlia chondrophila 2032/99]: E-rich region from 263 to 296 corrected with score 59
>WCHO-203-01-000220 	gi|337294091|emb|CCB92076.1| type III secretion integral inner membrane ring protein [Waddlia chondrophila 2032/99]: E-rich region from 100 to 130 corrected with score 53
>WCHO-203-01-000222 	gi|337294089|emb|CCB92074.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: G-rich region from 163 to 199 corrected with score 47
>WCHO-203-01-000225 	gi|337294086|emb|CCB92071.1| type III secretion specific chlamydia chaperone 2 [Waddlia chondrophila 2032/99]: K-rich region from 8 to 63 corrected with score 44
>WCHO-203-01-000226 	gi|337294085|emb|CCB92070.1| putative membrane protein [Waddlia chondrophila 2032/99]: V-rich region from 763 to 830 corrected with score 66
>WCHO-203-01-000226 	gi|337294085|emb|CCB92070.1| putative membrane protein [Waddlia chondrophila 2032/99]: S-rich region from 151 to 296 corrected with score 40
>WCHO-203-01-000236 	gi|337294075|emb|CCB92060.1| SWI/SNF helicase 2 family protein [Waddlia chondrophila 2032/99]: E-rich region from 103 to 148 corrected with score 40
>WCHO-203-01-000246 	gi|337294065|emb|CCB92050.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 82 to 131 corrected with score 71
>WCHO-203-01-000250 	gi|337294061|emb|CCB92046.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 139 to 384 corrected with score 66
>WCHO-203-01-000257 	gi|337294054|emb|CCB92039.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 101 to 143 corrected with score 52
>WCHO-203-01-000263 	gi|337294047|emb|CCB92033.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: Q-rich region from 192 to 295 corrected with score 43
>WCHO-203-01-000266 	gi|337294044|emb|CCB92030.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 173 to 268 corrected with score 51
>WCHO-203-01-000268 	gi|337294042|emb|CCB92028.1| putative bumetanide-sensitive Na-K-Cl cotransporter [Waddlia chondrophila 2032/99]: L-rich region from 315 to 408 corrected with score 45
>WCHO-203-01-000272 	gi|337294038|emb|CCB92024.1| Metalloprotease [Waddlia chondrophila 2032/99]: E-rich region from 471 to 517 corrected with score 47
>WCHO-203-01-000273 	gi|337294037|emb|CCB92023.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: S-rich region from 122 to 462 corrected with score 52
>WCHO-203-01-000274 	gi|337294036|emb|CCB92022.1| Ubiquinol oxidase subunit 2 [Waddlia chondrophila 2032/99]: L-rich region from 12 to 75 corrected with score 49
>WCHO-203-01-000279 	gi|337294031|emb|CCB92017.1| hypothetical protein WCH_BJ09020 [Waddlia chondrophila 2032/99]: E-rich region from 62 to 118 corrected with score 42
>WCHO-203-01-000284 	gi|337294026|emb|CCB92012.1| putative membrane protein [Waddlia chondrophila 2032/99]: L-rich region from 53 to 106 corrected with score 43
>WCHO-203-01-000296 	gi|337294014|emb|CCB92000.1| 2-oxoisovalerate dehydrogenase subunit alpha,mitochondrial [Waddlia chondrophila 2032/99]: K-rich region from 269 to 314 corrected with score 47
>WCHO-203-01-000332 	gi|337293978|emb|CCB91964.1| cys-Gly metallodipeptidase DUG1 [Waddlia chondrophila 2032/99]: L-rich region from 32 to 106 corrected with score 42
>WCHO-203-01-000344 	gi|337293965|emb|CCB91952.1| putative transposase InsQ for insertion sequence element IS609 [Waddlia chondrophila 2032/99]: K-rich region from 227 to 327 corrected with score 92
>WCHO-203-01-000353 	gi|337293956|emb|CCB91943.1| hypothetical protein WCH_DD19570 [Waddlia chondrophila 2032/99]: G-rich region from 195 to 346 corrected with score 187
>WCHO-203-01-000353 	gi|337293956|emb|CCB91943.1| hypothetical protein WCH_DD19570 [Waddlia chondrophila 2032/99]: T-rich region from 210 to 414 corrected with score 127
>WCHO-203-01-000353 	gi|337293956|emb|CCB91943.1| hypothetical protein WCH_DD19570 [Waddlia chondrophila 2032/99]: P-rich region from 192 to 215 corrected with score 45
>WCHO-203-01-000367 	gi|337293942|emb|CCB91929.1| Efflux pump membrane transporter BepE [Waddlia chondrophila 2032/99]: V-rich region from 343 to 501 corrected with score 57
>WCHO-203-01-000395 	gi|337293913|emb|CCB91901.1| 50S ribosomal protein L7/L12 [Waddlia chondrophila 2032/99]: A-rich region from 35 to 126 corrected with score 52
>WCHO-203-01-000398 	gi|337293910|emb|CCB91898.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 163 to 326 corrected with score 60
>WCHO-203-01-000408 	gi|337293900|emb|CCB91888.1| V-type ATP synthase subunit E [Waddlia chondrophila 2032/99]: E-rich region from 2 to 98 corrected with score 53
>WCHO-203-01-000441 	gi|337293867|emb|CCB91853.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 3070 to 3183 corrected with score 56
>WCHO-203-01-000441 	gi|337293867|emb|CCB91853.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: Q-rich region from 2269 to 2383 corrected with score 53
>WCHO-203-01-000449 	gi|337293858|emb|CCB91845.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: Y-rich region from 55 to 94 corrected with score 91
>WCHO-203-01-000450 	gi|337293857|emb|CCB91844.1| Exonuclease SbcC [Waddlia chondrophila 2032/99]: E-rich region from 668 to 918 corrected with score 76
>WCHO-203-01-000450 	gi|337293857|emb|CCB91844.1| Exonuclease SbcC [Waddlia chondrophila 2032/99]: K-rich region from 303 to 402 corrected with score 48
>WCHO-203-01-000450 	gi|337293857|emb|CCB91844.1| Exonuclease SbcC [Waddlia chondrophila 2032/99]: E-rich region from 550 to 613 corrected with score 41
>WCHO-203-01-000464 	gi|337293843|emb|CCB91830.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: Q-rich region from 59 to 201 corrected with score 47
>WCHO-203-01-000476 	gi|337293831|emb|CCB91817.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: A-rich region from 9 to 125 corrected with score 83
>WCHO-203-01-000479 	gi|337293828|emb|CCB91814.1| unknown protein [Waddlia chondrophila 2032/99]: A-rich region from 9 to 60 corrected with score 52
>WCHO-203-01-000482 	gi|337293825|emb|CCB91811.1| hypothetical protein WCH_AX06750 [Waddlia chondrophila 2032/99]: A-rich region from 56 to 193 corrected with score 100
>WCHO-203-01-000484 	gi|337293823|emb|CCB91809.1| hypothetical protein WCH_AX06730 [Waddlia chondrophila 2032/99]: A-rich region from 9 to 137 corrected with score 85
>WCHO-203-01-000488 	gi|337293818|emb|CCB91805.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: T-rich region from 606 to 651 corrected with score 46
>WCHO-203-01-000502 	gi|337293804|emb|CCB91791.1| RNA polymerase sigma-54 factor [Waddlia chondrophila 2032/99]: E-rich region from 40 to 149 corrected with score 71
>WCHO-203-01-000505 	gi|337293801|emb|CCB91787.1| hypothetical protein WCH_CN15810 [Waddlia chondrophila 2032/99]: A-rich region from 9 to 140 corrected with score 81
>WCHO-203-01-000508 	gi|337293798|emb|CCB91784.1| putative rhs family protein [Waddlia chondrophila 2032/99]: A-rich region from 9 to 155 corrected with score 99
>WCHO-203-01-000514 	gi|337293792|emb|CCB91778.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: A-rich region from 7 to 48 corrected with score 46
>WCHO-203-01-000527 	gi|337293779|emb|CCB91765.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 147 to 182 corrected with score 40
>WCHO-203-01-000529 	gi|337293777|emb|CCB91763.1| putative serine/threonine protein kinase [Waddlia chondrophila 2032/99]: K-rich region from 413 to 460 corrected with score 60
>WCHO-203-01-000537 	gi|337293769|emb|CCB91755.1| histone-like developmental protein [Waddlia chondrophila 2032/99]: K-rich region from 35 to 159 corrected with score 147
>WCHO-203-01-000537 	gi|337293769|emb|CCB91755.1| histone-like developmental protein [Waddlia chondrophila 2032/99]: A-rich region from 36 to 142 corrected with score 61
>WCHO-203-01-000546 	gi|337293759|emb|CCB91746.1| Skp-like protein [Waddlia chondrophila 2032/99]: Q-rich region from 41 to 119 corrected with score 41
>WCHO-203-01-000552 	gi|337293753|emb|CCB91740.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 102 to 252 corrected with score 70
>WCHO-203-01-000552 	gi|337293753|emb|CCB91740.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: N-rich region from 5 to 21 corrected with score 41
>WCHO-203-01-000553 	gi|337293752|emb|CCB91739.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [Waddlia chondrophila 2032/99]: E-rich region from 72 to 107 corrected with score 69
>WCHO-203-01-000558 	gi|337293747|emb|CCB91734.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 41 to 76 corrected with score 43
>WCHO-203-01-000562 	gi|337293743|emb|CCB91730.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 22 to 47 corrected with score 45
>WCHO-203-01-000565 	gi|337293740|emb|CCB91727.1| putative membrane-bound serine protease [Waddlia chondrophila 2032/99]: L-rich region from 535 to 596 corrected with score 43
>WCHO-203-01-000584 	gi|337293721|emb|CCB91708.1| putative membrane protein [Waddlia chondrophila 2032/99]: A-rich region from 9 to 127 corrected with score 43
>WCHO-203-01-000590 	gi|337293715|emb|CCB91702.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: S-rich region from 6 to 163 corrected with score 65
>WCHO-203-01-000591 	gi|337293714|emb|CCB91701.1| putative membrane protein [Waddlia chondrophila 2032/99]: L-rich region from 110 to 215 corrected with score 58
>WCHO-203-01-000598 	gi|337293707|emb|CCB91694.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 325 to 384 corrected with score 76
>WCHO-203-01-000639 	gi|337293665|emb|CCB91653.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: Q-rich region from 20 to 86 corrected with score 91
>WCHO-203-01-000639 	gi|337293665|emb|CCB91653.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: R-rich region from 22 to 86 corrected with score 67
>WCHO-203-01-000639 	gi|337293665|emb|CCB91653.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 20 to 73 corrected with score 46
>WCHO-203-01-000649 	gi|337293655|emb|CCB91643.1| putative membrane protein [Waddlia chondrophila 2032/99]: E-rich region from 2 to 40 corrected with score 42
>WCHO-203-01-000650 	gi|337293654|emb|CCB91642.1| putative membrane protein [Waddlia chondrophila 2032/99]: E-rich region from 433 to 476 corrected with score 65
>WCHO-203-01-000651 	gi|337293653|emb|CCB91641.1| putative general secretion pathway protein D [Waddlia chondrophila 2032/99]: Q-rich region from 415 to 454 corrected with score 47
>WCHO-203-01-000658 	gi|337293646|emb|CCB91634.1| putative membrane protein [Waddlia chondrophila 2032/99]: E-rich region from 152 to 168 corrected with score 48
>WCHO-203-01-000660 	gi|337293644|emb|CCB91632.1| putative membrane protein [Waddlia chondrophila 2032/99]: K-rich region from 34 to 97 corrected with score 40
>WCHO-203-01-000680 	gi|337293623|emb|CCB91612.1| putative secreted protein [Waddlia chondrophila 2032/99]: Q-rich region from 163 to 197 corrected with score 41
>WCHO-203-01-000691 	gi|337293612|emb|CCB91601.1| 60 kDa cysteine-rich outer membrane protein [Waddlia chondrophila 2032/99]: C-rich region from 167 to 203 corrected with score 60
>WCHO-203-01-000693 	gi|337293610|emb|CCB91599.1| unknown protein [Waddlia chondrophila 2032/99]: W-rich region from 3 to 20 corrected with score 43
>WCHO-203-01-000713 	gi|337293590|emb|CCB91579.1| putative ABC transporter, permease protein [Waddlia chondrophila 2032/99]: I-rich region from 18 to 44 corrected with score 41
>WCHO-203-01-000729 	gi|337293574|emb|CCB91563.1| ATP synthase subunit b [Waddlia chondrophila 2032/99]: E-rich region from 35 to 156 corrected with score 49
>WCHO-203-01-000759 	gi|337293544|emb|CCB91533.1| unknown protein [Waddlia chondrophila 2032/99]: F-rich region from 15 to 37 corrected with score 41
>WCHO-203-01-000763 	gi|337293540|emb|CCB91529.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: S-rich region from 68 to 177 corrected with score 46
>WCHO-203-01-000775 	gi|337293528|emb|CCB91517.1| putative mechanosensitive ion channel [Waddlia chondrophila 2032/99]: E-rich region from 195 to 265 corrected with score 43
>WCHO-203-01-000796 	gi|337293507|emb|CCB91496.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 315 to 467 corrected with score 80
>WCHO-203-01-000796 	gi|337293507|emb|CCB91496.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 671 to 736 corrected with score 51
>WCHO-203-01-000806 	gi|337293497|emb|CCB91486.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: L-rich region from 10 to 95 corrected with score 45
>WCHO-203-01-000813 	gi|337293490|emb|CCB91479.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase [Waddlia chondrophila 2032/99]: E-rich region from 30 to 178 corrected with score 80
>WCHO-203-01-000825 	gi|337293478|emb|CCB91467.1| putative rhs family protein [Waddlia chondrophila 2032/99]: A-rich region from 1400 to 1531 corrected with score 84
>WCHO-203-01-000828 	gi|337293475|emb|CCB91464.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: A-rich region from 9 to 60 corrected with score 47
>WCHO-203-01-000844 	gi|337293459|emb|CCB91448.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 348 to 473 corrected with score 79
>WCHO-203-01-000844 	gi|337293459|emb|CCB91448.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 21 to 266 corrected with score 55
>WCHO-203-01-000851 	gi|337293452|emb|CCB91441.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Waddlia chondrophila 2032/99]: K-rich region from 89 to 157 corrected with score 62
>WCHO-203-01-000857 	gi|337293446|emb|CCB91435.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 83 to 114 corrected with score 61
>WCHO-203-01-000862 	gi|337293441|emb|CCB91430.1| putative mechanosensitive ion channel [Waddlia chondrophila 2032/99]: K-rich region from 194 to 267 corrected with score 47
>WCHO-203-01-000865 	gi|337293438|emb|CCB91427.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 30 to 133 corrected with score 51
>WCHO-203-01-000874 	gi|337293429|emb|CCB91418.1| unknown protein [Waddlia chondrophila 2032/99]: K-rich region from 3 to 58 corrected with score 50
>WCHO-203-01-000880 	gi|337293423|emb|CCB91412.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 2 to 98 corrected with score 55
>WCHO-203-01-000886 	gi|337293417|emb|CCB91406.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 38 to 121 corrected with score 42
>WCHO-203-01-000888 	gi|337293415|emb|CCB91404.1| putative membrane protein [Waddlia chondrophila 2032/99]: A-rich region from 158 to 196 corrected with score 40
>WCHO-203-01-000889 	gi|337293414|emb|CCB91403.1| putative membrane protein [Waddlia chondrophila 2032/99]: G-rich region from 74 to 129 corrected with score 41
>WCHO-203-01-000894 	gi|337293409|emb|CCB91398.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 150 to 759 corrected with score 188
>WCHO-203-01-000936 	gi|337293367|emb|CCB91356.1| translation initiation factor IF-3 [Waddlia chondrophila 2032/99]: K-rich region from 36 to 89 corrected with score 44
>WCHO-203-01-000940 	gi|337293363|emb|CCB91352.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: W-rich region from 274 to 295 corrected with score 88
>WCHO-203-01-000940 	gi|337293363|emb|CCB91352.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: P-rich region from 425 to 504 corrected with score 47
>WCHO-203-01-000940 	gi|337293363|emb|CCB91352.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: H-rich region from 246 to 261 corrected with score 45
>WCHO-203-01-000941 	gi|337293362|emb|CCB91351.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 702 to 787 corrected with score 40
>WCHO-203-01-000950 	gi|337293353|emb|CCB91342.1| uncharacterized ABC transporter ATP-binding protein YheS [Waddlia chondrophila 2032/99]: K-rich region from 500 to 544 corrected with score 51
>WCHO-203-01-000993 	gi|337293309|emb|CCB91299.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: W-rich region from 278 to 299 corrected with score 84
>WCHO-203-01-000993 	gi|337293309|emb|CCB91299.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: Y-rich region from 242 to 269 corrected with score 66
>WCHO-203-01-000993 	gi|337293309|emb|CCB91299.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: R-rich region from 446 to 577 corrected with score 61
>WCHO-203-01-000993 	gi|337293309|emb|CCB91299.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: P-rich region from 413 to 466 corrected with score 49
>WCHO-203-01-000993 	gi|337293309|emb|CCB91299.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: H-rich region from 259 to 272 corrected with score 42
>WCHO-203-01-001012 	gi|337293290|emb|CCB91280.1| glycerate kinase [Waddlia chondrophila 2032/99]: G-rich region from 246 to 256 corrected with score 42
>WCHO-203-01-001033 	gi|337293269|emb|CCB91259.1| uncharacterized protein yjgR [Waddlia chondrophila 2032/99]: K-rich region from 448 to 477 corrected with score 43
>WCHO-203-01-001059 	gi|337293242|emb|CCB91233.1| 50S ribosomal protein L19 [Waddlia chondrophila 2032/99]: E-rich region from 118 to 168 corrected with score 45
>WCHO-203-01-001063 	gi|337293238|emb|CCB91229.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 801 to 906 corrected with score 77
>WCHO-203-01-001063 	gi|337293238|emb|CCB91229.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 2585 to 2729 corrected with score 77
>WCHO-203-01-001063 	gi|337293238|emb|CCB91229.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 4123 to 4354 corrected with score 70
>WCHO-203-01-001063 	gi|337293238|emb|CCB91229.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: T-rich region from 4308 to 4364 corrected with score 46
>WCHO-203-01-001063 	gi|337293238|emb|CCB91229.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 552 to 693 corrected with score 43
>WCHO-203-01-001063 	gi|337293238|emb|CCB91229.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 3277 to 3324 corrected with score 42
>WCHO-203-01-001066 	gi|337293235|emb|CCB91226.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 55 to 106 corrected with score 71
>WCHO-203-01-001072 	gi|337293229|emb|CCB91220.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 19 to 108 corrected with score 50
>WCHO-203-01-001102 	gi|337293199|emb|CCB91190.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 67 to 151 corrected with score 42
>WCHO-203-01-001103 	gi|337293198|emb|CCB91189.1| DNA repair protein recN [Waddlia chondrophila 2032/99]: E-rich region from 160 to 380 corrected with score 58
>WCHO-203-01-001120 	gi|337293181|emb|CCB91172.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 23 to 71 corrected with score 51
>WCHO-203-01-001127 	gi|337293174|emb|CCB91165.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 4 to 32 corrected with score 41
>WCHO-203-01-001138 	gi|337293163|emb|CCB91154.1| cytochrome d ubiquinol oxidase subunit 2 [Waddlia chondrophila 2032/99]: W-rich region from 113 to 118 corrected with score 40
>WCHO-203-01-001140 	gi|337293161|emb|CCB91152.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 886 to 995 corrected with score 59
>WCHO-203-01-001155 	gi|337293146|emb|CCB91137.1| 30S ribosomal protein S14 [Waddlia chondrophila 2032/99]: K-rich region from 3 to 30 corrected with score 44
>WCHO-203-01-001184 	gi|337293115|emb|CCB91108.1| DNA polymerase III subunit gamma/tau [Waddlia chondrophila 2032/99]: P-rich region from 388 to 419 corrected with score 62
>WCHO-203-01-001185 	gi|337293114|emb|CCB91107.1| UPF0133 protein pc0477 [Waddlia chondrophila 2032/99]: Q-rich region from 6 to 34 corrected with score 51
>WCHO-203-01-001191 	gi|337293108|emb|CCB91101.1| putative competence protein [Waddlia chondrophila 2032/99]: L-rich region from 227 to 430 corrected with score 52
>WCHO-203-01-001193 	gi|337293106|emb|CCB91099.1| DNA translocase ftsK [Waddlia chondrophila 2032/99]: E-rich region from 246 to 318 corrected with score 47
>WCHO-203-01-001211 	gi|337293087|emb|CCB91081.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: F-rich region from 3 to 21 corrected with score 42
>WCHO-203-01-001218 	gi|337293079|emb|CCB91074.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Waddlia chondrophila 2032/99]: L-rich region from 83 to 117 corrected with score 41
>WCHO-203-01-001256 	gi|337293040|emb|CCB91036.1| putative ATP-dependent Clp protease ATP-binding subunit [Waddlia chondrophila 2032/99]: E-rich region from 435 to 502 corrected with score 51
>WCHO-203-01-001256 	gi|337293040|emb|CCB91036.1| putative ATP-dependent Clp protease ATP-binding subunit [Waddlia chondrophila 2032/99]: E-rich region from 823 to 867 corrected with score 43
>WCHO-203-01-001259 	gi|337293037|emb|CCB91033.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 3130 to 3251 corrected with score 44
>WCHO-203-01-001259 	gi|337293037|emb|CCB91033.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 1845 to 2057 corrected with score 42
>WCHO-203-01-001264 	gi|337293031|emb|CCB91028.1| 3-oxoacyl-[acyl-carrier-protein] synthase 3 [Waddlia chondrophila 2032/99]: A-rich region from 46 to 125 corrected with score 50
>WCHO-203-01-001273 	gi|337293022|emb|CCB91019.1| SsrA-binding protein [Waddlia chondrophila 2032/99]: K-rich region from 13 to 87 corrected with score 44
>WCHO-203-01-001275 	gi|337293019|emb|CCB91017.1| uncharacterized protein CPn_0623/CP_0124/CPj0623/CpB0649 [Waddlia chondrophila 2032/99]: E-rich region from 93 to 252 corrected with score 106
>WCHO-203-01-001275 	gi|337293019|emb|CCB91017.1| uncharacterized protein CPn_0623/CP_0124/CPj0623/CpB0649 [Waddlia chondrophila 2032/99]: K-rich region from 93 to 138 corrected with score 49
>WCHO-203-01-001295 	gi|337292999|emb|CCB90997.1| putative peptide chain release factor 1 [Waddlia chondrophila 2032/99]: K-rich region from 79 to 134 corrected with score 85
>WCHO-203-01-001296 	gi|337292998|emb|CCB90996.1| UPF0158 protein CPn_0518/CP_0235/CPj0518/CpB0539 [Waddlia chondrophila 2032/99]: K-rich region from 334 to 403 corrected with score 105
>WCHO-203-01-001300 	gi|337292994|emb|CCB90992.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 64 to 166 corrected with score 66
>WCHO-203-01-001316 	gi|337292978|emb|CCB90976.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 143 to 203 corrected with score 46
>WCHO-203-01-001327 	gi|337292966|emb|CCB90965.1| Elongation factor 4 [Waddlia chondrophila 2032/99]: K-rich region from 565 to 586 corrected with score 44
>WCHO-203-01-001330 	gi|337292963|emb|CCB90962.1| UPF0053 protein HI_0056 [Waddlia chondrophila 2032/99]: V-rich region from 127 to 200 corrected with score 48
>WCHO-203-01-001337 	gi|337292956|emb|CCB90955.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 469 to 554 corrected with score 74
>WCHO-203-01-001339 	gi|337292954|emb|CCB90953.1| putative membrane protein [Waddlia chondrophila 2032/99]: F-rich region from 137 to 202 corrected with score 48
>WCHO-203-01-001353 	gi|337292940|emb|CCB90939.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 146 to 215 corrected with score 55
>WCHO-203-01-001359 	gi|337292934|emb|CCB90933.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 96 to 119 corrected with score 40
>WCHO-203-01-001384 	gi|337292908|emb|CCB90908.1| putative K(>)/H(>) antiporter subunit A/B [Waddlia chondrophila 2032/99]: V-rich region from 587 to 656 corrected with score 50
>WCHO-203-01-001390 	gi|337292902|emb|CCB90902.1| uncharacterized transporter HI_0883 [Waddlia chondrophila 2032/99]: A-rich region from 237 to 289 corrected with score 49
>WCHO-203-01-001393 	gi|337292899|emb|CCB90899.1| Valyl-tRNA synthetase [Waddlia chondrophila 2032/99]: E-rich region from 881 to 939 corrected with score 47
>WCHO-203-01-001456 	gi|337292834|emb|CCB90836.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 14 to 139 corrected with score 71
>WCHO-203-01-001460 	gi|337292830|emb|CCB90832.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 357 to 437 corrected with score 58
>WCHO-203-01-001483 	gi|337292806|emb|CCB90809.1| putative Small-conductance mechanosensitive channel [Waddlia chondrophila 2032/99]: E-rich region from 124 to 258 corrected with score 69
>WCHO-203-01-001484 	gi|337292805|emb|CCB90808.1| UvrABC system protein A [Waddlia chondrophila 2032/99]: K-rich region from 941 to 992 corrected with score 43
>WCHO-203-01-001487 	gi|337292802|emb|CCB90805.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 66 to 170 corrected with score 40
>WCHO-203-01-001489 	gi|337292800|emb|CCB90803.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 194 to 272 corrected with score 57
>WCHO-203-01-001492 	gi|337292796|emb|CCB90800.1| protein translocase subunit secA [Waddlia chondrophila 2032/99]: E-rich region from 282 to 429 corrected with score 55
>WCHO-203-01-001505 	gi|337292783|emb|CCB90787.1| type III secretion periplasmic lipoprotein [Waddlia chondrophila 2032/99]: E-rich region from 292 to 334 corrected with score 104
>WCHO-203-01-001520 	gi|337292768|emb|CCB90772.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 125 to 203 corrected with score 48
>WCHO-203-01-001538 	gi|337292749|emb|CCB90754.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 526 to 576 corrected with score 69
>WCHO-203-01-001539 	gi|337292748|emb|CCB90753.1| uncharacterized ABC transporter ATP-binding protein TM_0288 [Waddlia chondrophila 2032/99]: I-rich region from 148 to 179 corrected with score 44
>WCHO-203-01-001546 	gi|337292740|emb|CCB90746.1| putative Small-conductance mechanosensitive channel [Waddlia chondrophila 2032/99]: E-rich region from 42 to 411 corrected with score 125
>WCHO-203-01-001548 	gi|337292738|emb|CCB90744.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: Q-rich region from 39 to 131 corrected with score 40
>WCHO-203-01-001570 	gi|337292715|emb|CCB90722.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 82 to 180 corrected with score 74
>WCHO-203-01-001604 	gi|337292680|emb|CCB90688.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 10 to 67 corrected with score 48
>WCHO-203-01-001629 	gi|337292654|emb|CCB90661.1| putative ribosome biogenesis GTPase RsgA [Waddlia chondrophila 2032/99]: K-rich region from 33 to 70 corrected with score 63
>WCHO-203-01-001642 	gi|337292641|emb|CCB90648.1| heat shock protein 60 [Waddlia chondrophila 2032/99]: G-rich region from 535 to 558 corrected with score 65
>WCHO-203-01-001713 	gi|337292559|emb|CCB90576.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 124 to 160 corrected with score 44
>WCHO-203-01-001714 	gi|337292558|emb|CCB90575.1| 30S ribosomal protein S20 [Waddlia chondrophila 2032/99]: K-rich region from 3 to 95 corrected with score 48
>WCHO-203-01-001718 	gi|337292554|emb|CCB90571.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 86 to 216 corrected with score 83
>WCHO-203-01-001720 	gi|337292552|emb|CCB90569.1| RNA polymerase sigma factor rpoD [Waddlia chondrophila 2032/99]: K-rich region from 264 to 316 corrected with score 40
>WCHO-203-01-001722 	gi|337292550|emb|CCB90567.1| putative membrane protein [Waddlia chondrophila 2032/99]: K-rich region from 173 to 269 corrected with score 53
>WCHO-203-01-001771 	gi|337292498|emb|CCB90517.1| permease, major facilitator superfamily [Waddlia chondrophila 2032/99]: F-rich region from 89 to 111 corrected with score 40
>WCHO-203-01-001792 	gi|337292474|emb|CCB90496.1| putative tyrosine-protein phosphatase [Waddlia chondrophila 2032/99]: K-rich region from 382 to 468 corrected with score 50
>WCHO-203-01-001797 	gi|337292469|emb|CCB90491.1| putative TolA protein of Tol-Pal system [Waddlia chondrophila 2032/99]: K-rich region from 49 to 128 corrected with score 68
>WCHO-203-01-001810 	gi|337292456|emb|CCB90478.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: F-rich region from 43 to 93 corrected with score 46
>WCHO-203-01-001816 	gi|337292450|emb|CCB90472.1| putative Hydantoinase/oxoprolinase protein family [Waddlia chondrophila 2032/99]: A-rich region from 347 to 432 corrected with score 42
>WCHO-203-01-001818 	gi|337292448|emb|CCB90470.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: S-rich region from 5 to 66 corrected with score 41
>WCHO-203-01-001861 	gi|337292399|emb|CCB90425.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: S-rich region from 5 to 58 corrected with score 41
>WCHO-203-01-001864 	gi|337292396|emb|CCB90422.1| DNA topoisomerase 4 subunit B [Waddlia chondrophila 2032/99]: K-rich region from 337 to 384 corrected with score 44
>WCHO-203-01-001878 	gi|337292379|emb|CCB90408.1| putative membrane protein [Waddlia chondrophila 2032/99]: E-rich region from 205 to 285 corrected with score 49
>WCHO-203-01-001879 	gi|337292378|emb|CCB90407.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 98 to 340 corrected with score 48
>WCHO-203-01-001903 	gi|337292351|emb|CCB90383.1| 50S ribosomal protein L29 [Waddlia chondrophila 2032/99]: K-rich region from 2 to 53 corrected with score 46
>WCHO-203-01-001913 	gi|337292341|emb|CCB90373.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: K-rich region from 162 to 298 corrected with score 76
>WCHO-203-01-001916 	gi|337292338|emb|CCB90369.1| acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamineO-acyltransferase [Waddlia chondrophila 2032/99]: E-rich region from 189 to 209 corrected with score 42
>WCHO-203-01-001930 	gi|337292318|emb|CCB90355.1| translation initiation factor IF-2 [Waddlia chondrophila 2032/99]: K-rich region from 3 to 251 corrected with score 142
>WCHO-203-01-001930 	gi|337292318|emb|CCB90355.1| translation initiation factor IF-2 [Waddlia chondrophila 2032/99]: E-rich region from 34 to 140 corrected with score 44
>WCHO-203-01-001940 	gi|337292308|emb|CCB90345.1| type III secretion integral inner membrane protein [Waddlia chondrophila 2032/99]: G-rich region from 334 to 356 corrected with score 65
>WCHO-203-01-001940 	gi|337292308|emb|CCB90345.1| type III secretion integral inner membrane protein [Waddlia chondrophila 2032/99]: I-rich region from 30 to 144 corrected with score 41
>WCHO-203-01-001941 	gi|337292307|emb|CCB90344.1| negative regulator of type III secretion [Waddlia chondrophila 2032/99]: E-rich region from 368 to 399 corrected with score 92
>WCHO-203-01-001941 	gi|337292307|emb|CCB90344.1| negative regulator of type III secretion [Waddlia chondrophila 2032/99]: K-rich region from 22 to 115 corrected with score 71
>WCHO-203-01-001949 	gi|337292299|emb|CCB90336.1| chaperone protein ClpB [Waddlia chondrophila 2032/99]: E-rich region from 414 to 534 corrected with score 96
>WCHO-203-01-001951 	gi|337292297|emb|CCB90334.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 103 to 279 corrected with score 82
>WCHO-203-01-001984 	gi|337292262|emb|CCB90300.1| putative uncharacterized protein [Waddlia chondrophila 2032/99]: E-rich region from 23 to 85 corrected with score 51
>WCHO-WSU-01-000040 	gi|297620287|ref|YP_003708424.1| hypothetical protein wcw_0041 [Waddlia chondrophila WSU 86-1044]: K-rich region from 357 to 437 corrected with score 58
>WCHO-WSU-01-000044 	gi|297620291|ref|YP_003708428.1| hypothetical protein wcw_0045 [Waddlia chondrophila WSU 86-1044]: K-rich region from 14 to 136 corrected with score 67
>WCHO-WSU-01-000077 	gi|297620324|ref|YP_003708461.1| hypothetical protein wcw_0080 [Waddlia chondrophila WSU 86-1044]: K-rich region from 125 to 203 corrected with score 48
>WCHO-WSU-01-000093 	gi|297620340|ref|YP_003708477.1| type III secretion lipoprotein SctJ [Waddlia chondrophila WSU 86-1044]: E-rich region from 292 to 334 corrected with score 104
>WCHO-WSU-01-000103 	gi|297620350|ref|YP_003708487.1| Preprotein translocase subunit secA [Waddlia chondrophila WSU 86-1044]: E-rich region from 282 to 429 corrected with score 55
>WCHO-WSU-01-000111 	gi|297620358|ref|YP_003708495.1| putative tyrosine-protein phosphatase [Waddlia chondrophila WSU 86-1044]: K-rich region from 382 to 468 corrected with score 50
>WCHO-WSU-01-000116 	gi|297620363|ref|YP_003708500.1| putative TolA protein of Tol-Pal system [Waddlia chondrophila WSU 86-1044]: K-rich region from 49 to 128 corrected with score 68
>WCHO-WSU-01-000128 	gi|297620375|ref|YP_003708512.1| hypothetical protein wcw_0131 [Waddlia chondrophila WSU 86-1044]: F-rich region from 1 to 51 corrected with score 46
>WCHO-WSU-01-000134 	gi|297620381|ref|YP_003708518.1| putative Hydantoinase/oxoprolinase protein family [Waddlia chondrophila WSU 86-1044]: A-rich region from 347 to 432 corrected with score 42
>WCHO-WSU-01-000135 	gi|297620382|ref|YP_003708519.1| hypothetical protein wcw_0138 [Waddlia chondrophila WSU 86-1044]: S-rich region from 5 to 66 corrected with score 41
>WCHO-WSU-01-000157 	gi|297620404|ref|YP_003708541.1| hypothetical protein wcw_0160 [Waddlia chondrophila WSU 86-1044]: T-rich region from 606 to 651 corrected with score 41
>WCHO-WSU-01-000170 	gi|297620417|ref|YP_003708554.1| RNA polymerase sigma-54 factor [Waddlia chondrophila WSU 86-1044]: E-rich region from 40 to 149 corrected with score 71
>WCHO-WSU-01-000171 	gi|297620418|ref|YP_003708555.1| putative rhs family protein [Waddlia chondrophila WSU 86-1044]: A-rich region from 1402 to 1533 corrected with score 89
>WCHO-WSU-01-000173 	gi|297620420|ref|YP_003708557.1| putative rhs family protein [Waddlia chondrophila WSU 86-1044]: A-rich region from 56 to 202 corrected with score 99
>WCHO-WSU-01-000178 	gi|297620425|ref|YP_003708562.1| hypothetical protein wcw_0181 [Waddlia chondrophila WSU 86-1044]: A-rich region from 2 to 35 corrected with score 42
>WCHO-WSU-01-000190 	gi|297620437|ref|YP_003708574.1| hypothetical protein wcw_0193 [Waddlia chondrophila WSU 86-1044]: E-rich region from 147 to 182 corrected with score 40
>WCHO-WSU-01-000192 	gi|297620439|ref|YP_003708576.1| putative serine/threonine protein kinase [Waddlia chondrophila WSU 86-1044]: K-rich region from 413 to 460 corrected with score 60
>WCHO-WSU-01-000200 	gi|297620447|ref|YP_003708584.1| Histone H1-like protein Hc1 [Waddlia chondrophila WSU 86-1044]: K-rich region from 22 to 146 corrected with score 147
>WCHO-WSU-01-000200 	gi|297620447|ref|YP_003708584.1| Histone H1-like protein Hc1 [Waddlia chondrophila WSU 86-1044]: A-rich region from 23 to 129 corrected with score 61
>WCHO-WSU-01-000239 	gi|297620486|ref|YP_003708623.1| ATP-dependent Clp protease ATP-binding subunit clpC [Waddlia chondrophila WSU 86-1044]: E-rich region from 435 to 502 corrected with score 51
>WCHO-WSU-01-000239 	gi|297620486|ref|YP_003708623.1| ATP-dependent Clp protease ATP-binding subunit clpC [Waddlia chondrophila WSU 86-1044]: E-rich region from 823 to 867 corrected with score 40
>WCHO-WSU-01-000241 	gi|297620488|ref|YP_003708625.1| hypothetical protein wcw_0244 [Waddlia chondrophila WSU 86-1044]: E-rich region from 1841 to 2058 corrected with score 49
>WCHO-WSU-01-000241 	gi|297620488|ref|YP_003708625.1| hypothetical protein wcw_0244 [Waddlia chondrophila WSU 86-1044]: E-rich region from 3075 to 3248 corrected with score 41
>WCHO-WSU-01-000291 	gi|297620538|ref|YP_003708675.1| permease, major facilitator superfamily [Waddlia chondrophila WSU 86-1044]: F-rich region from 89 to 111 corrected with score 40
>WCHO-WSU-01-000305 	gi|297620552|ref|YP_003708689.1| 30S ribosomal protein S12 [Waddlia chondrophila WSU 86-1044]: K-rich region from 9 to 51 corrected with score 45
>WCHO-WSU-01-000313 	gi|297620560|ref|YP_003708697.1| GTP-binding protein lepA [Waddlia chondrophila WSU 86-1044]: K-rich region from 565 to 586 corrected with score 44
>WCHO-WSU-01-000316 	gi|297620563|ref|YP_003708700.1| integral membrane protein, TerC family [Waddlia chondrophila WSU 86-1044]: V-rich region from 127 to 200 corrected with score 48
>WCHO-WSU-01-000323 	gi|297620570|ref|YP_003708707.1| hypothetical protein wcw_0327 [Waddlia chondrophila WSU 86-1044]: E-rich region from 469 to 554 corrected with score 74
>WCHO-WSU-01-000325 	gi|297620572|ref|YP_003708709.1| hypothetical protein wcw_0329 [Waddlia chondrophila WSU 86-1044]: F-rich region from 137 to 202 corrected with score 48
>WCHO-WSU-01-000339 	gi|297620586|ref|YP_003708723.1| hypothetical protein wcw_0343 [Waddlia chondrophila WSU 86-1044]: E-rich region from 146 to 215 corrected with score 53
>WCHO-WSU-01-000345 	gi|297620592|ref|YP_003708729.1| hypothetical protein wcw_0349 [Waddlia chondrophila WSU 86-1044]: E-rich region from 96 to 119 corrected with score 40
>WCHO-WSU-01-000357 	gi|297620604|ref|YP_003708741.1| putative ABC transporter ATP-binding protein [Waddlia chondrophila WSU 86-1044]: I-rich region from 148 to 179 corrected with score 44
>WCHO-WSU-01-000358 	gi|297620605|ref|YP_003708742.1| hypothetical protein wcw_0363 [Waddlia chondrophila WSU 86-1044]: K-rich region from 526 to 576 corrected with score 69
>WCHO-WSU-01-000381 	gi|297620628|ref|YP_003708765.1| hypothetical protein wcw_0387 [Waddlia chondrophila WSU 86-1044]: K-rich region from 98 to 330 corrected with score 48
>WCHO-WSU-01-000382 	gi|297620629|ref|YP_003708766.1| hypothetical protein wcw_0388 [Waddlia chondrophila WSU 86-1044]: E-rich region from 205 to 285 corrected with score 48
>WCHO-WSU-01-000385 	gi|297620632|ref|YP_003708769.1| hypothetical protein wcw_0391 [Waddlia chondrophila WSU 86-1044]: A-rich region from 9 to 146 corrected with score 100
>WCHO-WSU-01-000387 	gi|297620634|ref|YP_003708771.1| hypothetical protein wcw_0393 [Waddlia chondrophila WSU 86-1044]: A-rich region from 9 to 125 corrected with score 83
>WCHO-WSU-01-000400 	gi|297620647|ref|YP_003708784.1| hypothetical protein wcw_0406 [Waddlia chondrophila WSU 86-1044]: Q-rich region from 59 to 201 corrected with score 47
>WCHO-WSU-01-000415 	gi|297620662|ref|YP_003708799.1| exonuclease SbcC [Waddlia chondrophila WSU 86-1044]: E-rich region from 668 to 918 corrected with score 79
>WCHO-WSU-01-000415 	gi|297620662|ref|YP_003708799.1| exonuclease SbcC [Waddlia chondrophila WSU 86-1044]: K-rich region from 303 to 402 corrected with score 48
>WCHO-WSU-01-000415 	gi|297620662|ref|YP_003708799.1| exonuclease SbcC [Waddlia chondrophila WSU 86-1044]: E-rich region from 550 to 613 corrected with score 41
>WCHO-WSU-01-000416 	gi|297620663|ref|YP_003708800.1| hypothetical protein wcw_0422 [Waddlia chondrophila WSU 86-1044]: Y-rich region from 55 to 94 corrected with score 91
>WCHO-WSU-01-000417 	gi|297620664|ref|YP_003708801.1| cell division protein FtsY [Waddlia chondrophila WSU 86-1044]: A-rich region from 133 to 189 corrected with score 42
>WCHO-WSU-01-000428 	gi|297620675|ref|YP_003708812.1| putative tetratricopeptide TPR_2 repeat protein [Waddlia chondrophila WSU 86-1044]: L-rich region from 26 to 100 corrected with score 42
>WCHO-WSU-01-000458 	gi|297620705|ref|YP_003708842.1| Pyruvate dehydrogenase, E1 component alpha subunit [Waddlia chondrophila WSU 86-1044]: K-rich region from 316 to 361 corrected with score 47
>WCHO-WSU-01-000470 	gi|297620717|ref|YP_003708854.1| hypothetical protein wcw_0477 [Waddlia chondrophila WSU 86-1044]: L-rich region from 61 to 114 corrected with score 43
>WCHO-WSU-01-000482 	gi|297620729|ref|YP_003708866.1| cytochrome o ubiquinol oxidase, subunit II [Waddlia chondrophila WSU 86-1044]: L-rich region from 12 to 75 corrected with score 49
>WCHO-WSU-01-000483 	gi|297620730|ref|YP_003708867.1| hypothetical protein wcw_0490 [Waddlia chondrophila WSU 86-1044]: S-rich region from 2 to 472 corrected with score 55
>WCHO-WSU-01-000484 	gi|297620731|ref|YP_003708868.1| Metalloprotease [Waddlia chondrophila WSU 86-1044]: E-rich region from 471 to 517 corrected with score 46
>WCHO-WSU-01-000488 	gi|297620735|ref|YP_003708872.1| putative bumetanide-sensitive Na-K-Cl cotransporter [Waddlia chondrophila WSU 86-1044]: L-rich region from 315 to 408 corrected with score 45
>WCHO-WSU-01-000490 	gi|297620737|ref|YP_003708874.1| hypothetical protein wcw_0497 [Waddlia chondrophila WSU 86-1044]: K-rich region from 156 to 251 corrected with score 51
>WCHO-WSU-01-000494 	gi|297620741|ref|YP_003708878.1| hypothetical protein wcw_0501 [Waddlia chondrophila WSU 86-1044]: Q-rich region from 192 to 295 corrected with score 43
>WCHO-WSU-01-000497 	gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]: K-rich region from 377 to 434 corrected with score 45
>WCHO-WSU-01-000511 	gi|297620758|ref|YP_003708895.1| hypothetical protein wcw_0518 [Waddlia chondrophila WSU 86-1044]: K-rich region from 448 to 477 corrected with score 43
>WCHO-WSU-01-000513 	gi|297620760|ref|YP_003708897.1| hypothetical protein wcw_0520 [Waddlia chondrophila WSU 86-1044]: L-rich region from 9 to 53 corrected with score 44
>WCHO-WSU-01-000528 	gi|297620775|ref|YP_003708912.1| Glycerate kinase [Waddlia chondrophila WSU 86-1044]: G-rich region from 246 to 256 corrected with score 42
>WCHO-WSU-01-000544 	gi|297620791|ref|YP_003708928.1| hypothetical protein wcw_0552 [Waddlia chondrophila WSU 86-1044]: W-rich region from 278 to 299 corrected with score 84
>WCHO-WSU-01-000544 	gi|297620791|ref|YP_003708928.1| hypothetical protein wcw_0552 [Waddlia chondrophila WSU 86-1044]: Y-rich region from 242 to 269 corrected with score 66
>WCHO-WSU-01-000544 	gi|297620791|ref|YP_003708928.1| hypothetical protein wcw_0552 [Waddlia chondrophila WSU 86-1044]: R-rich region from 446 to 577 corrected with score 61
>WCHO-WSU-01-000544 	gi|297620791|ref|YP_003708928.1| hypothetical protein wcw_0552 [Waddlia chondrophila WSU 86-1044]: P-rich region from 413 to 466 corrected with score 49
>WCHO-WSU-01-000544 	gi|297620791|ref|YP_003708928.1| hypothetical protein wcw_0552 [Waddlia chondrophila WSU 86-1044]: H-rich region from 259 to 272 corrected with score 42
>WCHO-WSU-01-000581 	gi|297620828|ref|YP_003708965.1| 50S ribosomal protein L7/L12 [Waddlia chondrophila WSU 86-1044]: A-rich region from 35 to 126 corrected with score 52
>WCHO-WSU-01-000584 	gi|297620831|ref|YP_003708968.1| hypothetical protein wcw_0594 [Waddlia chondrophila WSU 86-1044]: E-rich region from 159 to 322 corrected with score 60
>WCHO-WSU-01-000593 	gi|297620840|ref|YP_003708977.1| V-type ATP synthase subunit E [Waddlia chondrophila WSU 86-1044]: E-rich region from 2 to 98 corrected with score 53
>WCHO-WSU-01-000628 	gi|297620875|ref|YP_003709012.1| hypothetical protein wcw_0638 [Waddlia chondrophila WSU 86-1044]: E-rich region from 3069 to 3182 corrected with score 56
>WCHO-WSU-01-000628 	gi|297620875|ref|YP_003709012.1| hypothetical protein wcw_0638 [Waddlia chondrophila WSU 86-1044]: Q-rich region from 2268 to 2382 corrected with score 53
>WCHO-WSU-01-000641 	gi|297620888|ref|YP_003709025.1| hypothetical protein wcw_0651 [Waddlia chondrophila WSU 86-1044]: F-rich region from 3 to 21 corrected with score 42
>WCHO-WSU-01-000663 	gi|297620910|ref|YP_003709047.1| hypothetical protein wcw_0673 [Waddlia chondrophila WSU 86-1044]: Q-rich region from 78 to 150 corrected with score 50
>WCHO-WSU-01-000674 	gi|297620921|ref|YP_003709058.1| putative cell division protein FtsH [Waddlia chondrophila WSU 86-1044]: P-rich region from 890 to 897 corrected with score 40
>WCHO-WSU-01-000689 	gi|297620936|ref|YP_003709073.1| 50S ribosomal protein L19 [Waddlia chondrophila WSU 86-1044]: E-rich region from 118 to 168 corrected with score 45
>WCHO-WSU-01-000690 	gi|297620937|ref|YP_003709074.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044]: K-rich region from 7 to 43 corrected with score 50
>WCHO-WSU-01-000693 	gi|297620940|ref|YP_003709077.1| hypothetical protein wcw_0704 [Waddlia chondrophila WSU 86-1044]: E-rich region from 4125 to 4356 corrected with score 83
>WCHO-WSU-01-000693 	gi|297620940|ref|YP_003709077.1| hypothetical protein wcw_0704 [Waddlia chondrophila WSU 86-1044]: E-rich region from 795 to 907 corrected with score 75
>WCHO-WSU-01-000693 	gi|297620940|ref|YP_003709077.1| hypothetical protein wcw_0704 [Waddlia chondrophila WSU 86-1044]: E-rich region from 552 to 693 corrected with score 61
>WCHO-WSU-01-000693 	gi|297620940|ref|YP_003709077.1| hypothetical protein wcw_0704 [Waddlia chondrophila WSU 86-1044]: E-rich region from 2586 to 2730 corrected with score 57
>WCHO-WSU-01-000693 	gi|297620940|ref|YP_003709077.1| hypothetical protein wcw_0704 [Waddlia chondrophila WSU 86-1044]: T-rich region from 4309 to 4366 corrected with score 46
>WCHO-WSU-01-000693 	gi|297620940|ref|YP_003709077.1| hypothetical protein wcw_0704 [Waddlia chondrophila WSU 86-1044]: K-rich region from 3278 to 3325 corrected with score 42
>WCHO-WSU-01-000696 	gi|297620943|ref|YP_003709080.1| hypothetical protein wcw_0707 [Waddlia chondrophila WSU 86-1044]: E-rich region from 55 to 106 corrected with score 71
>WCHO-WSU-01-000701 	gi|297620948|ref|YP_003709085.1| hypothetical protein wcw_0712 [Waddlia chondrophila WSU 86-1044]: K-rich region from 19 to 108 corrected with score 50
>WCHO-WSU-01-000740 	gi|297620987|ref|YP_003709124.1| hypothetical protein wcw_0751 [Waddlia chondrophila WSU 86-1044]: E-rich region from 67 to 151 corrected with score 42
>WCHO-WSU-01-000741 	gi|297620988|ref|YP_003709125.1| DNA repair protein recN [Waddlia chondrophila WSU 86-1044]: E-rich region from 160 to 368 corrected with score 56
>WCHO-WSU-01-000759 	gi|297621006|ref|YP_003709143.1| hypothetical protein wcw_0770 [Waddlia chondrophila WSU 86-1044]: E-rich region from 23 to 71 corrected with score 51
>WCHO-WSU-01-000765 	gi|297621012|ref|YP_003709149.1| hypothetical protein wcw_0776 [Waddlia chondrophila WSU 86-1044]: K-rich region from 7 to 31 corrected with score 41
>WCHO-WSU-01-000775 	gi|297621022|ref|YP_003709159.1| putative cytochrome d ubiquinol oxidase subunit 2 [Waddlia chondrophila WSU 86-1044]: W-rich region from 113 to 118 corrected with score 40
>WCHO-WSU-01-000777 	gi|297621024|ref|YP_003709161.1| hypothetical protein wcw_0788 [Waddlia chondrophila WSU 86-1044]: E-rich region from 886 to 995 corrected with score 59
>WCHO-WSU-01-000792 	gi|297621039|ref|YP_003709176.1| 30S ribosomal protein S14 [Waddlia chondrophila WSU 86-1044]: K-rich region from 3 to 30 corrected with score 44
>WCHO-WSU-01-000793 	gi|297621040|ref|YP_003709177.1| 50S ribosomal protein L36 [Waddlia chondrophila WSU 86-1044]: K-rich region from 2 to 45 corrected with score 41
>WCHO-WSU-01-000794 	gi|297621041|ref|YP_003709178.1| 50S ribosomal protein L34 [Waddlia chondrophila WSU 86-1044]: R-rich region from 3 to 45 corrected with score 47
>WCHO-WSU-01-000826 	gi|297621073|ref|YP_003709210.1| hypothetical protein wcw_0838 [Waddlia chondrophila WSU 86-1044]: E-rich region from 103 to 279 corrected with score 82
>WCHO-WSU-01-000828 	gi|297621075|ref|YP_003709212.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Waddlia chondrophila WSU 86-1044]: E-rich region from 414 to 534 corrected with score 96
>WCHO-WSU-01-000836 	gi|297621083|ref|YP_003709220.1| putative type III secreted protein SctW [Waddlia chondrophila WSU 86-1044]: E-rich region from 368 to 399 corrected with score 92
>WCHO-WSU-01-000836 	gi|297621083|ref|YP_003709220.1| putative type III secreted protein SctW [Waddlia chondrophila WSU 86-1044]: K-rich region from 22 to 115 corrected with score 71
>WCHO-WSU-01-000837 	gi|297621084|ref|YP_003709221.1| type III secretion inner membrane protein SctV [Waddlia chondrophila WSU 86-1044]: G-rich region from 334 to 356 corrected with score 65
>WCHO-WSU-01-000837 	gi|297621084|ref|YP_003709221.1| type III secretion inner membrane protein SctV [Waddlia chondrophila WSU 86-1044]: I-rich region from 30 to 144 corrected with score 41
>WCHO-WSU-01-000846 	gi|297621093|ref|YP_003709230.1| Translation initiation factor IF-2 [Waddlia chondrophila WSU 86-1044]: K-rich region from 3 to 251 corrected with score 141
>WCHO-WSU-01-000846 	gi|297621093|ref|YP_003709230.1| Translation initiation factor IF-2 [Waddlia chondrophila WSU 86-1044]: E-rich region from 34 to 140 corrected with score 42
>WCHO-WSU-01-000858 	gi|297621105|ref|YP_003709242.1| hypothetical protein wcw_0870 [Waddlia chondrophila WSU 86-1044]: E-rich region from 23 to 85 corrected with score 51
>WCHO-WSU-01-000883 	gi|297621130|ref|YP_003709267.1| ABC transporter, ATPase subunit [Waddlia chondrophila WSU 86-1044]: K-rich region from 500 to 544 corrected with score 51
>WCHO-WSU-01-000892 	gi|297621139|ref|YP_003709276.1| hypothetical protein wcw_0908 [Waddlia chondrophila WSU 86-1044]: E-rich region from 724 to 809 corrected with score 40
>WCHO-WSU-01-000893 	gi|297621140|ref|YP_003709277.1| hypothetical protein wcw_0909 [Waddlia chondrophila WSU 86-1044]: W-rich region from 284 to 305 corrected with score 88
>WCHO-WSU-01-000893 	gi|297621140|ref|YP_003709277.1| hypothetical protein wcw_0909 [Waddlia chondrophila WSU 86-1044]: P-rich region from 435 to 514 corrected with score 47
>WCHO-WSU-01-000893 	gi|297621140|ref|YP_003709277.1| hypothetical protein wcw_0909 [Waddlia chondrophila WSU 86-1044]: H-rich region from 256 to 271 corrected with score 45
>WCHO-WSU-01-000897 	gi|297621144|ref|YP_003709281.1| Translation initiation factor IF-3 [Waddlia chondrophila WSU 86-1044]: K-rich region from 60 to 113 corrected with score 44
>WCHO-WSU-01-000938 	gi|297621185|ref|YP_003709322.1| hypothetical protein wcw_0956 [Waddlia chondrophila WSU 86-1044]: E-rich region from 150 to 759 corrected with score 187
>WCHO-WSU-01-000943 	gi|297621190|ref|YP_003709327.1| hypothetical protein wcw_0961 [Waddlia chondrophila WSU 86-1044]: G-rich region from 98 to 153 corrected with score 41
>WCHO-WSU-01-000944 	gi|297621191|ref|YP_003709328.1| hypothetical protein wcw_0962 [Waddlia chondrophila WSU 86-1044]: A-rich region from 158 to 196 corrected with score 40
>WCHO-WSU-01-000946 	gi|297621193|ref|YP_003709330.1| hypothetical protein wcw_0964 [Waddlia chondrophila WSU 86-1044]: E-rich region from 38 to 121 corrected with score 42
>WCHO-WSU-01-000952 	gi|297621199|ref|YP_003709336.1| hypothetical protein wcw_0970 [Waddlia chondrophila WSU 86-1044]: E-rich region from 2 to 98 corrected with score 55
>WCHO-WSU-01-000957 	gi|297621204|ref|YP_003709341.1| hypothetical protein wcw_0975 [Waddlia chondrophila WSU 86-1044]: K-rich region from 3 to 49 corrected with score 49
>WCHO-WSU-01-000966 	gi|297621213|ref|YP_003709350.1| hypothetical protein wcw_0984 [Waddlia chondrophila WSU 86-1044]: E-rich region from 30 to 133 corrected with score 51
>WCHO-WSU-01-000969 	gi|297621216|ref|YP_003709353.1| putative mechanosensitive ion channel [Waddlia chondrophila WSU 86-1044]: K-rich region from 194 to 267 corrected with score 47
>WCHO-WSU-01-000974 	gi|297621221|ref|YP_003709358.1| hypothetical protein wcw_0992 [Waddlia chondrophila WSU 86-1044]: E-rich region from 83 to 114 corrected with score 57
>WCHO-WSU-01-000980 	gi|297621227|ref|YP_003709364.1| 2-oxogluturate dehydrogenase complex E2 component [Waddlia chondrophila WSU 86-1044]: K-rich region from 81 to 149 corrected with score 61
>WCHO-WSU-01-000984 	gi|297621231|ref|YP_003709368.1| hypothetical protein wcw_1002 [Waddlia chondrophila WSU 86-1044]: K-rich region from 178 to 530 corrected with score 81
>WCHO-WSU-01-000984 	gi|297621231|ref|YP_003709368.1| hypothetical protein wcw_1002 [Waddlia chondrophila WSU 86-1044]: E-rich region from 561 to 619 corrected with score 43
>WCHO-WSU-01-000984 	gi|297621231|ref|YP_003709368.1| hypothetical protein wcw_1002 [Waddlia chondrophila WSU 86-1044]: E-rich region from 62 to 169 corrected with score 41
>WCHO-WSU-01-000999 	gi|297621246|ref|YP_003709383.1| hypothetical protein wcw_1018 [Waddlia chondrophila WSU 86-1044]: A-rich region from 9 to 60 corrected with score 47
>WCHO-WSU-01-001000 	gi|297621247|ref|YP_003709384.1| hypothetical protein wcw_1019 [Waddlia chondrophila WSU 86-1044]: A-rich region from 10 to 50 corrected with score 46
>WCHO-WSU-01-001003 	gi|297621250|ref|YP_003709387.1| hypothetical protein wcw_1022 [Waddlia chondrophila WSU 86-1044]: A-rich region from 9 to 140 corrected with score 78
>WCHO-WSU-01-001004 	gi|297621251|ref|YP_003709388.1| putative rhs family protein [Waddlia chondrophila WSU 86-1044]: A-rich region from 1400 to 1531 corrected with score 96
>WCHO-WSU-01-001017 	gi|297621264|ref|YP_003709401.1| hypothetical protein wcw_1036 [Waddlia chondrophila WSU 86-1044]: E-rich region from 30 to 178 corrected with score 80
>WCHO-WSU-01-001024 	gi|297621271|ref|YP_003709408.1| hypothetical protein wcw_1043 [Waddlia chondrophila WSU 86-1044]: L-rich region from 24 to 109 corrected with score 45
>WCHO-WSU-01-001032 	gi|297621279|ref|YP_003709416.1| hypothetical protein wcw_1051 [Waddlia chondrophila WSU 86-1044]: G-rich region from 38 to 60 corrected with score 41
>WCHO-WSU-01-001033 	gi|297621280|ref|YP_003709417.1| hypothetical protein wcw_1052 [Waddlia chondrophila WSU 86-1044]: E-rich region from 341 to 493 corrected with score 84
>WCHO-WSU-01-001033 	gi|297621280|ref|YP_003709417.1| hypothetical protein wcw_1052 [Waddlia chondrophila WSU 86-1044]: E-rich region from 697 to 762 corrected with score 57
>WCHO-WSU-01-001054 	gi|297621301|ref|YP_003709438.1| putative mechanosensitive ion channel [Waddlia chondrophila WSU 86-1044]: E-rich region from 195 to 265 corrected with score 43
>WCHO-WSU-01-001065 	gi|297621312|ref|YP_003709449.1| hypothetical protein wcw_1086 [Waddlia chondrophila WSU 86-1044]: S-rich region from 68 to 177 corrected with score 46
>WCHO-WSU-01-001069 	gi|297621316|ref|YP_003709453.1| hypothetical protein wcw_1090 [Waddlia chondrophila WSU 86-1044]: K-rich region from 208 to 247 corrected with score 45
>WCHO-WSU-01-001103 	gi|297621350|ref|YP_003709487.1| putative F-type ATP synthase, subunit b [Waddlia chondrophila WSU 86-1044]: E-rich region from 35 to 156 corrected with score 49
>WCHO-WSU-01-001119 	gi|297621366|ref|YP_003709503.1| putative ABC transporter, permease protein [Waddlia chondrophila WSU 86-1044]: I-rich region from 18 to 44 corrected with score 41
>WCHO-WSU-01-001139 	gi|297621386|ref|YP_003709523.1| putative cysteine-rich outer membrane protein [Waddlia chondrophila WSU 86-1044]: C-rich region from 20 to 41 corrected with score 42
>WCHO-WSU-01-001141 	gi|297621388|ref|YP_003709525.1| putative 60 kDa cysteine-rich outer membrane protein [Waddlia chondrophila WSU 86-1044]: C-rich region from 257 to 293 corrected with score 60
>WCHO-WSU-01-001151 	gi|297621398|ref|YP_003709535.1| putative secreted protein [Waddlia chondrophila WSU 86-1044]: Q-rich region from 130 to 164 corrected with score 41
>WCHO-WSU-01-001160 	gi|297621407|ref|YP_003709544.1| SsrA-binding protein [Waddlia chondrophila WSU 86-1044]: K-rich region from 82 to 156 corrected with score 44
>WCHO-WSU-01-001168 	gi|297621415|ref|YP_003709552.1| 3-oxoacyl-[acyl-carrier-protein] synthase 3 [Waddlia chondrophila WSU 86-1044]: A-rich region from 46 to 125 corrected with score 50
>WCHO-WSU-01-001171 	gi|297621418|ref|YP_003709555.1| putative Skp-like protein precursor [Waddlia chondrophila WSU 86-1044]: Q-rich region from 41 to 119 corrected with score 41
>WCHO-WSU-01-001179 	gi|297621426|ref|YP_003709563.1| hypothetical protein wcw_1200 [Waddlia chondrophila WSU 86-1044]: K-rich region from 76 to 237 corrected with score 70
>WCHO-WSU-01-001180 	gi|297621427|ref|YP_003709564.1| dihydrolipoamide acetyltransferase [Waddlia chondrophila WSU 86-1044]: E-rich region from 78 to 113 corrected with score 71
>WCHO-WSU-01-001185 	gi|297621432|ref|YP_003709569.1| hypothetical protein wcw_1206 [Waddlia chondrophila WSU 86-1044]: K-rich region from 41 to 92 corrected with score 43
>WCHO-WSU-01-001189 	gi|297621436|ref|YP_003709573.1| hypothetical protein wcw_1210 [Waddlia chondrophila WSU 86-1044]: E-rich region from 22 to 47 corrected with score 45
>WCHO-WSU-01-001190 	gi|297621437|ref|YP_003709574.1| UPF0365 protein yqfA [Waddlia chondrophila WSU 86-1044]: L-rich region from 4 to 32 corrected with score 41
>WCHO-WSU-01-001192 	gi|297621439|ref|YP_003709576.1| putative membrane-bound serine protease [Waddlia chondrophila WSU 86-1044]: L-rich region from 535 to 596 corrected with score 43
>WCHO-WSU-01-001211 	gi|297621458|ref|YP_003709595.1| hypothetical protein wcw_1232 [Waddlia chondrophila WSU 86-1044]: A-rich region from 9 to 127 corrected with score 43
>WCHO-WSU-01-001217 	gi|297621464|ref|YP_003709601.1| hypothetical protein wcw_1238 [Waddlia chondrophila WSU 86-1044]: S-rich region from 6 to 163 corrected with score 65
>WCHO-WSU-01-001218 	gi|297621465|ref|YP_003709602.1| hypothetical protein wcw_1239 [Waddlia chondrophila WSU 86-1044]: L-rich region from 110 to 215 corrected with score 58
>WCHO-WSU-01-001225 	gi|297621472|ref|YP_003709609.1| hypothetical protein wcw_1246 [Waddlia chondrophila WSU 86-1044]: K-rich region from 2 to 44 corrected with score 54
>WCHO-WSU-01-001262 	gi|297621509|ref|YP_003709646.1| hypothetical protein wcw_1288 [Waddlia chondrophila WSU 86-1044]: Q-rich region from 39 to 131 corrected with score 40
>WCHO-WSU-01-001264 	gi|297621511|ref|YP_003709648.1| putative Small-conductance mechanosensitive channel [Waddlia chondrophila WSU 86-1044]: E-rich region from 112 to 481 corrected with score 125
>WCHO-WSU-01-001265 	gi|297621512|ref|YP_003709649.1| UvrABC system protein A [Waddlia chondrophila WSU 86-1044]: K-rich region from 941 to 964 corrected with score 43
>WCHO-WSU-01-001268 	gi|297621515|ref|YP_003709652.1| hypothetical protein wcw_1294 [Waddlia chondrophila WSU 86-1044]: E-rich region from 66 to 170 corrected with score 40
>WCHO-WSU-01-001270 	gi|297621517|ref|YP_003709654.1| hypothetical protein wcw_1296 [Waddlia chondrophila WSU 86-1044]: E-rich region from 194 to 272 corrected with score 57
>WCHO-WSU-01-001288 	gi|297621535|ref|YP_003709672.1| Valyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]: E-rich region from 881 to 939 corrected with score 47
>WCHO-WSU-01-001291 	gi|297621538|ref|YP_003709675.1| D-alanine/glycine transport protein, sodium- dependent [Waddlia chondrophila WSU 86-1044]: A-rich region from 237 to 289 corrected with score 49
>WCHO-WSU-01-001297 	gi|297621544|ref|YP_003709681.1| multiple resistance and pH homeostasis system, subunit A/B [Waddlia chondrophila WSU 86-1044]: V-rich region from 606 to 675 corrected with score 50
>WCHO-WSU-01-001323 	gi|297621570|ref|YP_003709707.1| hypothetical protein wcw_1350 [Waddlia chondrophila WSU 86-1044]: E-rich region from 145 to 201 corrected with score 41
>WCHO-WSU-01-001334 	gi|297621581|ref|YP_003709718.1| hypothetical protein wcw_1361 [Waddlia chondrophila WSU 86-1044]: K-rich region from 65 to 102 corrected with score 40
>WCHO-WSU-01-001352 	gi|297621599|ref|YP_003709736.1| hypothetical protein wcw_1379 [Waddlia chondrophila WSU 86-1044]: E-rich region from 252 to 512 corrected with score 112
>WCHO-WSU-01-001363 	gi|297621610|ref|YP_003709747.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Waddlia chondrophila WSU 86-1044]: L-rich region from 83 to 117 corrected with score 41
>WCHO-WSU-01-001364 	gi|297621611|ref|YP_003709748.1| putative fatty-acid desaturase [Waddlia chondrophila WSU 86-1044]: K-rich region from 267 to 364 corrected with score 48
>WCHO-WSU-01-001373 	gi|297621620|ref|YP_003709757.1| hypothetical protein wcw_1401 [Waddlia chondrophila WSU 86-1044]: K-rich region from 2 to 51 corrected with score 45
>WCHO-WSU-01-001395 	gi|297621642|ref|YP_003709779.1| DNA polymerase III, gamma and tau subunits [Waddlia chondrophila WSU 86-1044]: P-rich region from 388 to 419 corrected with score 62
>WCHO-WSU-01-001396 	gi|297621643|ref|YP_003709780.1| putative YbaB family protein [Waddlia chondrophila WSU 86-1044]: Q-rich region from 6 to 34 corrected with score 51
>WCHO-WSU-01-001402 	gi|297621649|ref|YP_003709786.1| putative competence protein [Waddlia chondrophila WSU 86-1044]: L-rich region from 227 to 430 corrected with score 52
>WCHO-WSU-01-001404 	gi|297621651|ref|YP_003709788.1| DNA translocase ftsK [Waddlia chondrophila WSU 86-1044]: E-rich region from 263 to 335 corrected with score 46
>WCHO-WSU-01-001411 	gi|297621658|ref|YP_003709795.1| hypothetical protein wcw_1440 [Waddlia chondrophila WSU 86-1044]: E-rich region from 143 to 208 corrected with score 41
>WCHO-WSU-01-001427 	gi|297621674|ref|YP_003709811.1| hypothetical protein wcw_1456 [Waddlia chondrophila WSU 86-1044]: E-rich region from 64 to 166 corrected with score 66
>WCHO-WSU-01-001431 	gi|297621678|ref|YP_003709815.1| hypothetical protein wcw_1460 [Waddlia chondrophila WSU 86-1044]: K-rich region from 334 to 403 corrected with score 105
>WCHO-WSU-01-001432 	gi|297621679|ref|YP_003709816.1| putative peptide chain release factor 1 [Waddlia chondrophila WSU 86-1044]: K-rich region from 79 to 134 corrected with score 85
>WCHO-WSU-01-001449 	gi|297621696|ref|YP_003709833.1| hypothetical protein wcw_1478 [Waddlia chondrophila WSU 86-1044]: E-rich region from 93 to 252 corrected with score 106
>WCHO-WSU-01-001449 	gi|297621696|ref|YP_003709833.1| hypothetical protein wcw_1478 [Waddlia chondrophila WSU 86-1044]: K-rich region from 93 to 138 corrected with score 49
>WCHO-WSU-01-001465 	gi|297621712|ref|YP_003709849.1| 50S ribosomal protein L29 [Waddlia chondrophila WSU 86-1044]: K-rich region from 4 to 55 corrected with score 46
>WCHO-WSU-01-001475 	gi|297621722|ref|YP_003709859.1| hypothetical protein wcw_1504 [Waddlia chondrophila WSU 86-1044]: K-rich region from 162 to 298 corrected with score 63
>WCHO-WSU-01-001479 	gi|297621726|ref|YP_003709863.1| acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine o-acyltransferase [Waddlia chondrophila WSU 86-1044]: E-rich region from 267 to 287 corrected with score 42
>WCHO-WSU-01-001496 	gi|297621743|ref|YP_003709880.1| hypothetical protein wcw_1525 [Waddlia chondrophila WSU 86-1044]: E-rich region from 82 to 180 corrected with score 74
>WCHO-WSU-01-001529 	gi|297621776|ref|YP_003709913.1| hypothetical protein wcw_1559 [Waddlia chondrophila WSU 86-1044]: S-rich region from 5 to 58 corrected with score 41
>WCHO-WSU-01-001532 	gi|297621779|ref|YP_003709916.1| DNA topoisomerase IV, subunit B [Waddlia chondrophila WSU 86-1044]: K-rich region from 337 to 384 corrected with score 44
>WCHO-WSU-01-001543 	gi|297621790|ref|YP_003709927.1| hypothetical protein wcw_1573 [Waddlia chondrophila WSU 86-1044]: E-rich region from 101 to 143 corrected with score 52
>WCHO-WSU-01-001547 	gi|297621794|ref|YP_003709931.1| hypothetical protein wcw_1577 [Waddlia chondrophila WSU 86-1044]: E-rich region from 139 to 388 corrected with score 60
>WCHO-WSU-01-001553 	gi|297621800|ref|YP_003709937.1| hypothetical protein wcw_1583 [Waddlia chondrophila WSU 86-1044]: K-rich region from 82 to 131 corrected with score 68
>WCHO-WSU-01-001563 	gi|297621810|ref|YP_003709947.1| SWI/SNF helicase 2 family protein [Waddlia chondrophila WSU 86-1044]: E-rich region from 103 to 148 corrected with score 40
>WCHO-WSU-01-001572 	gi|297621819|ref|YP_003709956.1| hypothetical protein wcw_1605 [Waddlia chondrophila WSU 86-1044]: V-rich region from 763 to 830 corrected with score 66
>WCHO-WSU-01-001572 	gi|297621819|ref|YP_003709956.1| hypothetical protein wcw_1605 [Waddlia chondrophila WSU 86-1044]: S-rich region from 151 to 296 corrected with score 40
>WCHO-WSU-01-001576 	gi|297621823|ref|YP_003709960.1| hypothetical protein wcw_1609 [Waddlia chondrophila WSU 86-1044]: G-rich region from 163 to 199 corrected with score 40
>WCHO-WSU-01-001578 	gi|297621825|ref|YP_003709962.1| putative type III secretion system protein SctD [Waddlia chondrophila WSU 86-1044]: E-rich region from 263 to 296 corrected with score 59
>WCHO-WSU-01-001578 	gi|297621825|ref|YP_003709962.1| putative type III secretion system protein SctD [Waddlia chondrophila WSU 86-1044]: E-rich region from 100 to 130 corrected with score 53
>WCHO-WSU-01-001579 	gi|297621826|ref|YP_003709963.1| putative needle chaperone SctE [Waddlia chondrophila WSU 86-1044]: K-rich region from 8 to 58 corrected with score 47
>WCHO-WSU-01-001584 	gi|297621831|ref|YP_003709968.1| hypothetical protein wcw_1617 [Waddlia chondrophila WSU 86-1044]: E-rich region from 9 to 151 corrected with score 95
>WCHO-WSU-01-001585 	gi|297621832|ref|YP_003709969.1| hypothetical protein wcw_1618 [Waddlia chondrophila WSU 86-1044]: E-rich region from 336 to 370 corrected with score 59
>WCHO-WSU-01-001585 	gi|297621832|ref|YP_003709969.1| hypothetical protein wcw_1618 [Waddlia chondrophila WSU 86-1044]: E-rich region from 13 to 123 corrected with score 51
>WCHO-WSU-01-001587 	gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044]: E-rich region from 7 to 90 corrected with score 183
>WCHO-WSU-01-001587 	gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044]: D-rich region from 11 to 56 corrected with score 52
>WCHO-WSU-01-001596 	gi|297621843|ref|YP_003709980.1| putative chromosome segregation SMC protein [Waddlia chondrophila WSU 86-1044]: E-rich region from 179 to 1051 corrected with score 251
>WCHO-WSU-01-001605 	gi|297621852|ref|YP_003709989.1| Chaperone protein dnaK [Waddlia chondrophila WSU 86-1044]: E-rich region from 494 to 644 corrected with score 70
>WCHO-WSU-01-001607 	gi|297621854|ref|YP_003709991.1| hypothetical protein wcw_1640 [Waddlia chondrophila WSU 86-1044]: E-rich region from 781 to 833 corrected with score 49
>WCHO-WSU-01-001607 	gi|297621854|ref|YP_003709991.1| hypothetical protein wcw_1640 [Waddlia chondrophila WSU 86-1044]: E-rich region from 1966 to 2019 corrected with score 41
>WCHO-WSU-01-001607 	gi|297621854|ref|YP_003709991.1| hypothetical protein wcw_1640 [Waddlia chondrophila WSU 86-1044]: E-rich region from 2262 to 2325 corrected with score 41
>WCHO-WSU-01-001609 	gi|297621856|ref|YP_003709993.1| hypothetical protein wcw_1642 [Waddlia chondrophila WSU 86-1044]: L-rich region from 88 to 105 corrected with score 41
>WCHO-WSU-01-001616 	gi|297621863|ref|YP_003710000.1| GTPase ObgE [Waddlia chondrophila WSU 86-1044]: G-rich region from 31 to 43 corrected with score 44
>WCHO-WSU-01-001618 	gi|297621865|ref|YP_003710002.1| 50S ribosomal protein L21 [Waddlia chondrophila WSU 86-1044]: K-rich region from 106 to 127 corrected with score 44
>WCHO-WSU-01-001623 	gi|297621870|ref|YP_003710007.1| hypothetical protein wcw_1656 [Waddlia chondrophila WSU 86-1044]: E-rich region from 163 to 213 corrected with score 46
>WCHO-WSU-01-001623 	gi|297621870|ref|YP_003710007.1| hypothetical protein wcw_1656 [Waddlia chondrophila WSU 86-1044]: E-rich region from 19 to 72 corrected with score 45
>WCHO-WSU-01-001624 	gi|297621871|ref|YP_003710008.1| hypothetical protein wcw_1657 [Waddlia chondrophila WSU 86-1044]: E-rich region from 512 to 663 corrected with score 88
>WCHO-WSU-01-001650 	gi|297621897|ref|YP_003710034.1| tail-specific protease [Waddlia chondrophila WSU 86-1044]: E-rich region from 125 to 199 corrected with score 46
>WCHO-WSU-01-001665 	gi|297621912|ref|YP_003710049.1| putative ADP/ATP translocase [Waddlia chondrophila WSU 86-1044]: F-rich region from 97 to 116 corrected with score 40
>WCHO-WSU-01-001679 	gi|297621926|ref|YP_003710063.1| DNA topoisomerase I [Waddlia chondrophila WSU 86-1044]: K-rich region from 747 to 775 corrected with score 60
>WCHO-WSU-01-001734 	gi|297621981|ref|YP_003710118.1| ABC-type transporter, permease subunit [Waddlia chondrophila WSU 86-1044]: I-rich region from 143 to 236 corrected with score 46
>WCHO-WSU-01-001750 	gi|297621997|ref|YP_003710134.1| hypothetical protein wcw_1789 [Waddlia chondrophila WSU 86-1044]: Q-rich region from 46 to 439 corrected with score 206
>WCHO-WSU-01-001750 	gi|297621997|ref|YP_003710134.1| hypothetical protein wcw_1789 [Waddlia chondrophila WSU 86-1044]: E-rich region from 264 to 434 corrected with score 84
>WCHO-WSU-01-001762 	gi|297622009|ref|YP_003710146.1| hypothetical protein wcw_1801 [Waddlia chondrophila WSU 86-1044]: G-rich region from 125 to 332 corrected with score 182
>WCHO-WSU-01-001762 	gi|297622009|ref|YP_003710146.1| hypothetical protein wcw_1801 [Waddlia chondrophila WSU 86-1044]: T-rich region from 130 to 437 corrected with score 87
>WCHO-WSU-01-001771 	gi|297622018|ref|YP_003710155.1| hypothetical protein wcw_1810 [Waddlia chondrophila WSU 86-1044]: E-rich region from 34 to 106 corrected with score 42
>WCHO-WSU-01-001772 	gi|297622019|ref|YP_003710156.1| hypothetical protein wcw_1811 [Waddlia chondrophila WSU 86-1044]: G-rich region from 199 to 442 corrected with score 278
>WCHO-WSU-01-001772 	gi|297622019|ref|YP_003710156.1| hypothetical protein wcw_1811 [Waddlia chondrophila WSU 86-1044]: T-rich region from 222 to 512 corrected with score 178
>WCHO-WSU-01-001772 	gi|297622019|ref|YP_003710156.1| hypothetical protein wcw_1811 [Waddlia chondrophila WSU 86-1044]: P-rich region from 196 to 221 corrected with score 77
>WCHO-WSU-01-001788 	gi|297622035|ref|YP_003710172.1| multidrug-efflux transport protein [Waddlia chondrophila WSU 86-1044]: V-rich region from 343 to 501 corrected with score 57
>WCHO-WSU-01-001810 	gi|297622057|ref|YP_003710194.1| Chaperonin GroEL [Waddlia chondrophila WSU 86-1044]: G-rich region from 535 to 558 corrected with score 65
>WCHO-WSU-01-001823 	gi|297622070|ref|YP_003710207.1| putative ribosome biogenesis GTPase [Waddlia chondrophila WSU 86-1044]: K-rich region from 33 to 70 corrected with score 63
>WCHO-WSU-01-001864 	gi|297622111|ref|YP_003710248.1| hypothetical protein wcw_1905 [Waddlia chondrophila WSU 86-1044]: K-rich region from 34 to 97 corrected with score 40
>WCHO-WSU-01-001866 	gi|297622113|ref|YP_003710250.1| hypothetical protein wcw_1907 [Waddlia chondrophila WSU 86-1044]: E-rich region from 152 to 168 corrected with score 48
>WCHO-WSU-01-001873 	gi|297622120|ref|YP_003710257.1| putative general secretion pathway protein D [Waddlia chondrophila WSU 86-1044]: Q-rich region from 426 to 465 corrected with score 46
>WCHO-WSU-01-001874 	gi|297622121|ref|YP_003710258.1| hypothetical protein wcw_1915 [Waddlia chondrophila WSU 86-1044]: E-rich region from 433 to 476 corrected with score 65
>WCHO-WSU-01-001875 	gi|297622122|ref|YP_003710259.1| hypothetical protein wcw_1916 [Waddlia chondrophila WSU 86-1044]: E-rich region from 3 to 41 corrected with score 42
>WCHO-WSU-01-001885 	gi|297622132|ref|YP_003710269.1| hypothetical protein wcw_1926 [Waddlia chondrophila WSU 86-1044]: Q-rich region from 20 to 86 corrected with score 91
>WCHO-WSU-01-001885 	gi|297622132|ref|YP_003710269.1| hypothetical protein wcw_1926 [Waddlia chondrophila WSU 86-1044]: R-rich region from 22 to 86 corrected with score 67
>WCHO-WSU-01-001885 	gi|297622132|ref|YP_003710269.1| hypothetical protein wcw_1926 [Waddlia chondrophila WSU 86-1044]: E-rich region from 20 to 73 corrected with score 46
>WCHO-WSU-01-001898 	gi|297622145|ref|YP_003710282.1| 30S ribosomal protein S20 [Waddlia chondrophila WSU 86-1044]: K-rich region from 3 to 95 corrected with score 49
>WCHO-WSU-01-001902 	gi|297622149|ref|YP_003710286.1| hypothetical protein wcw_1947 [Waddlia chondrophila WSU 86-1044]: E-rich region from 86 to 216 corrected with score 83
>WCHO-WSU-01-001904 	gi|297622151|ref|YP_003710288.1| RNA polymerase sigma factor rpoD [Waddlia chondrophila WSU 86-1044]: K-rich region from 264 to 316 corrected with score 40
>WCHO-WSU-01-001906 	gi|297622153|ref|YP_003710290.1| hypothetical protein wcw_1951 [Waddlia chondrophila WSU 86-1044]: K-rich region from 173 to 269 corrected with score 50
>WCHO-WSU-01-001946 	gi|297660619|ref|YP_003710330.1| phage/plasmid primase [Waddlia chondrophila WSU 86-1044]: E-rich region from 139 to 240 corrected with score 85
>WCHO-WSU-01-001948 	gi|297660621|ref|YP_003710332.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044]: P-rich region from 103 to 120 corrected with score 42
>WCHO-WSU-01-001948 	gi|297660621|ref|YP_003710332.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044]: N-rich region from 106 to 143 corrected with score 43
